Array 1 974986-975614 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL622183.1 Streptococcus oralis ATCC 49296 SCAFFOLD1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 974986 28 100.0 33 ............................ CCAAATCTTTTTCAGCGACGTATTCTGTACCAC 975047 28 96.4 33 ............T............... TACCACTGCTCTTGCGATATTCTTTGCCAATCT 975108 28 96.4 33 ............T............... CGTGACTTTCCGTTTGGTGACTGATTATAGCCT 975169 28 96.4 33 A........................... CGGTTAAATCAACTTCGCCCACAAAGGTTTTAA 975230 28 96.4 33 A........................... TAGAACCATGTTGTTCGTAAGTGTTCAATGAGA 975291 28 96.4 33 A........................... TTCAATCTATGAACTCTTATCATGGCTACAACG 975352 28 96.4 24 A........................... TTGACTACGTAGCGCAAAGACATA Deletion [975404] 975404 28 100.0 33 ............................ TATGAAAAAATCTCTAAAGAAATTGATAAGTTA 975465 28 100.0 33 ............................ TACTCCTGAACATAATACTTTTGAGCTGACTGC 975526 28 100.0 33 ............................ TATGCTCCGAAATTCGAGAGCAGATGACGGATT 975587 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 98.0 32 GTTTTTCCCGCACACGCGGGGGTGATCC # Left flank : TGCTGGTAGTGCTCAAACCAAGGATTATCAACAATTTTTAGATAACATCTATACTGGTAGCCGAATGAAATTTCGAGTGGTGCTTAATCCAGTTATTTCCTTAGTATCACCAGATAATCTTAAAAGAGGTATTGTAAAACCTCATATTACGAGTGAACATCAGATGAATTATCTAGTAGAACGCTCTGACAAAAATGGATTCTCACTGATAAAAGAAGATTTTTCAATCGTTGAACGTGGTTATGAGGTGTTTAAAAAAGCTGTTAAACCTATCCGATTGATAAAGGTTGTTTATGAAGGGGTCTTAACAGTTAGTGATGCAGATCTTTTTAAGAAGCTTTTGACTGAAGGAATGGGAAAGAAAAAAGCATACGGTTTTGGTTTAATGACCGTTATTCCATTGGGAAACGAATCATGGTAAAAAAAAGTGGAACGAAGAAAACATCTCTGCGAGAACTTCCTAAAATAAGTGATCGTGTCAGCTTTATTTACGTAGAACA # Right flank : CTACTTTTTATTTCCTATATTCCTTTAATTTCAAGTTTTTCCCGCACGCGTGGGAGATTGACTACATAAAATGAGATATAAGAAAAATATCCCTATTGAAAACTGATAAATTAGAGATAGGAGTGTTTTATTATAGGAAAAAAGCATATTCTGTGTAAATGAAGATATCTTACATAACAAAGGAGAAGACAAGTGAATCGAATGAAGTCATCATGGAGACATTTGGTAACAATAACATCAGTTGGGTAAAAAACTTGTAGAAGAGTATAAGAAAATTTGCCTTGTATCTGTTGCCTTAGAGTGTTTCAGAACTAAATGTTCAACATTTTTTGATTGGAAAAACGAGACTAAAATCCTTCTGCCAAATCCCTAGCTCTTCTAGCAGGTGCTAGTGAGTCCGAAGTTGCTCCCCTCGTTGAGCGCCTCATCGCAGATAAAACCTTTAACTTAGAGACAGCCCAGCGCTATCTCGAAAACTTAAGATCATAAAAAACTCAGAC # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.03, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCCCGCACACGCGGGGGTGATCC # Alternate repeat : TTTTTCCCGCACACGCGGGGGTGATCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1895058-1895353 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL622183.1 Streptococcus oralis ATCC 49296 SCAFFOLD1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =============================== ================== 1895058 35 100.0 30 ................................... TGCTAATGCTGGTCTTCTCCTTGCTTATGA 1895123 35 100.0 30 ................................... AATAGCGCTTATTGGCGCTTGATGACGAAC 1895188 35 100.0 30 ................................... TTTAAACCAATCCATGAACATTGATACGGT 1895253 35 100.0 31 ................................... CTGTCACAGCTAGAACACAAACGGCTCCATT 1895319 35 97.1 0 .....................A............. | ========== ====== ====== ====== =================================== =============================== ================== 5 35 99.4 30 GTTTTTGTAGTCTCCAAAATTGTGACCGATAAAAC # Left flank : ATTCTTCAGGCACGAAATTAACGACATAAGCAGCAACTAAACTCGCCCCTACAAGTAAGCCTGTTCCTAGATATTGCCCCGTATAAATATGCCATTTCTGTTTATTCTGTGATAGCTGTGCAAATAAAATAATTAAAATAATTAAATAATCGATACTGGTGGAAATATAAACACCAATAGCAGATATGATTGTCTGTCCCATAAAAAACTCCTGTATTAGTCAGTAATAAATCAGCAGATTTTAGGAGAGCACAGACACATTAATTTAGCTATCGCTAGTGGGTAATGTCGAACGTAGGAAAGCATTTTACTCCTCCTCAAAACGTAGTTACAAAGTAATTTCTAACTGGAATTCGGTGACTACTTCCATGTAAAGTATAACATACTATACTTTACTTCGTAAAGTGTGGGCTCTCCGAGGGGGCTTGCAGACAGTTACTCGGCTTGAAAAGCCGAGTAACTGCGCACCTTCATGGTGTCATTAGCTGATACCATTTGAG # Right flank : CCTCAATAAAAAAGCTCGCTGAAGTCAGAGAGCTGATTTGAGCTCGGGCTAAAATCCTAGTGAAAAAGATAAAACTCCTTGTGTTCATCGAACACTGTGTCCTTTCCCTATTTTCATACGGATTTTTGGCGCCCTTAGCATCATAATTCTTGCTGGATAAAACGTTTGTAGACTAGGCGGCAAGCCGAAGATTGTACAAAAATGTTAGTGAAACAAAAAATCTCCCCGAAGGGAGATGATTTGGTTTATTTTACCTTACAGTGCTAGGAACCGTAACCGAAGATAATACTTTAGTATATCGAGGTAGGATGACAAAAGTAAAAAAGCTCTCTGAATATCAGAGAGCTCAAGTCTTGCTGGATAAAACGTTTATAGACTAGGCGACGAGGCGAAGATTGTACTAATGGTACATCGAGCTGAAGCCAACGAAGTATAGAAACGTTTTAGACGCAAGATTAGCGACGAAGTCCAAGAGAGTTGATTAACTCACGGTAACGGTT # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTAGTCTCCAAAATTGTGACCGATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //