Array 1 20979-21267 **** Predicted by CRISPRDetect 2.4 *** >NZ_JENM01000020.1 Clostridium novyi A str. BKT29909 Contig20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 20979 30 100.0 36 .............................. TTGGACGCTTTAATAGGACAGGTTGTTGACATAAAT 21045 30 100.0 32 .............................. AGTTTTTTCATTTTGTTTTTCCTCCTTTACAA 21107 30 100.0 35 .............................. TAAATAATTAAACTTCCTAATTTCATTTTATTTTC 21172 30 100.0 36 .............................. TAGGTAGATGATTGAGGTGAGTATATGAAAAATGTA 21238 30 93.3 0 .............A.............T.. | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 98.7 35 GTTGAACATTAACGTGAGATGTATTTAAAT # Left flank : GCAGGAATGTTGAGGAGTGTTGGAGTTCCTACTAAATTAGTAATGGGATATAAAAATGATATAAAAACTTATCATGCTTGGAACCAAGTATATCTACAAAAATCTAATAAATGGGTTACTATAGATACTACCTATGATTCATGTTTAAAAAACTAAAAATTTATCACTTTCAATGATAAAGGATTCAAATCAATATAAAGTTAGTAAAGAATATTAATTTAAATGGAAATAAGCAGATAACCACAATTGTTGGTTATCTGCTTTTAGTTTTGTTTAATTAAAAATGTTTATAAAGTATTGATACATACGATTTAATATGAAATTTTCCCAACCGATTCATAAAATAAAATCCCTTAAACATCTTGATTTTAAAGGGTTTGATAAGGTTTTTCTATGAAAAAATTAAATAATCAAAATCGGTTGGGAAAAAATCAACGAAAGTGTTTATTTTCAATGCTTCTAAGGGTATAATAAAAATAAGGAATGGCTATTTTACTGTA # Right flank : TAGGCGTGTAAGTATTGAAATTACTGGCTTTAAAGAAATTCGTCAAAAATATCGTCAAAAATAATTTTCAAAAAATATTTTTGATTACTTGATGGGCTTTATTTAACATATCGTTATTAACGTGGCTATAGGTTTTTAAAGTTTGCTCTACAGAGTGGCCTAAGATTTGTGCAGCAGTTTTAAAATCAACGCCATTTGCAATTAACTTTGTTGCATATGTATGACGTAATTCATGAATAGTTATATTATAGCCATGTCCTTTTAATTTTCCATTAACAATAGCACAAACAGAGTTAGTAGCTTTAAAATTTAAAATTCTATTATTTATGTCTATAACATGTTTATGGTTTAATAATTCCTTAATAACTGCATAGGAAACCGGAATTATTCTATTAGAATTTTTACTTTTAACATCTCCAAACCCCCAAATACCTTTTTCTATTTTCTTCCATTGCTTATTTACGGTTATAGTATTATTTTTAAAATCTATATTATCCCAA # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACGTGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 5610-5444 **** Predicted by CRISPRDetect 2.4 *** >NZ_JENM01000064.1 Clostridium novyi A str. BKT29909 Contig64, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 5609 33 97.0 33 ...A............................. TCGCTCTTGAGGATGCCATTGTATTACCTATTA 5543 33 100.0 34 ................................. TGCAGGATATGATTTTAGTACGCCAATAGAAGTA 5476 33 78.8 0 .CT....A....T......G........CC... | ========== ====== ====== ====== ================================= ================================== ================== 3 33 91.9 34 AAATGTTGAACAATAACATAAGATGTATTTAAA # Left flank : GAAAATTTCAGAAGGATGTAAGTTTTTTTGAAATTTTGAGAGAAAAAAAATTAAGTTTATCAATTGGTGCAGATGTATCTAAATATATTCTTCCTCATAAAAATCAAAATGACCTTTTACACAAATTAGAAGAAATTTAAAAATAGATATATAATAATTTGTATTATTAAATTAGAATTAGTTGTATCTTATATTTAGCTAAAAAATATAAAAAACTATTCTTAAAATAAACACCCAAACCAAAAGCCCTAGGTTAACCTAGAGCTTTTTATTATCTTCTAAAAATTTAAGAAGTTGATAACAATTCTATTGCGTCAAAAAAACGTCAAAAATTATTTGCTAATATTATCTTATTTATTCTACATTAAAATTTAAAAAAGTGCTTTAAAACCTAGTAAAATCAATGTTTTTATATTAAAATATATTTATATTTGGTATATATAAATATATACATGAGATGTATTTAAATATAAGTGAATAGAATTGATATTTTAAAAAAG # Right flank : ATTTATTAAATAAGGTTTCTTTATAAGATTAGATATTGTTCATAAATAGACAAAAAACGCAAAACTGGATTTTCACAGTTTAGTGGTAATACTATATAAAAACAAAAATAAGTATTAAATAAGCCCTAGGTTAATCCTAGAGCTTTTAGTATAATTTGAAGTTTACTAAGATGAAATTAATATTTTTGGTATTTGAAATTTATGGAAAAATATTATATAATTTTTATATAAATATTAATATTGGAGGTATATATGAAAAGGTTTTTGGAGTATAAGATTAAATTTATTGAAAGTTTAATTTTATGTTTTATGTTAATGCTAGGAATAAGATTTACATCTTTTGCAGATACCAAAACTTTTTCATCGGAGATTGTAGACACACAAAAAACTAAAGATAAGGTCATGATAACAAATGGTAATGAAAATATTAAAATTCACTATATAGATGTTGGGCAAGGAGATTCTGCTTTGGTTCAACAAGATGGATATACTATGTTAAT # Questionable array : NO Score: 3.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAATGTTGAACAATAACATAAGATGTATTTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:81.82%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-85.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //