Array 1 3353-994 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSLL01000021.1 Sporomusa acidovorans DSM 3132 SPACI_contig000021, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 3352 30 100.0 35 .............................. CGCCTATGTCGCTTGACACTGGCGGGCCTATTTGA 3287 30 100.0 37 .............................. TCAGATCAGATAGCCGCTGCTCAAATCGCACTAAGAG 3220 30 100.0 36 .............................. GAAAAAATGACGGGCCGGGGTGCCTTGCCAGCACAT 3154 30 100.0 35 .............................. TAGTCGGCAGACGGTCACAGGAATCATGGGAAGAT 3089 30 100.0 36 .............................. AATAAGGGAGGATGCCAATGGACAGTAAGCAGGCAC 3023 30 100.0 39 .............................. ATATCGATTTCCGGCCTGGTGCCGTCCGCCTGCTCATGC 2954 30 100.0 36 .............................. CTTCTTTTTCAAGTTTAAGTATTTTGTCCTTAGCTT 2888 30 100.0 38 .............................. TTAACACTCAAAACCAAAAGATTGCCGCCAAAGAGCAG 2820 30 100.0 36 .............................. CCGGACTGGCAAGCCTTTTTTACGGTAGATTCTTCG 2754 30 100.0 39 .............................. ATGTATCTCTATGTCTATTATATTACCACAACTACACAC 2685 30 100.0 37 .............................. GCAGGCACAAGGCATTCAGCCTCATGATCACAGTCAG 2618 30 100.0 36 .............................. TATACACTCCCCGTAACAATTAAGAGCTACCGCAAA 2552 30 100.0 36 .............................. TTGATTCCGGTACTCATGAATGGTCTGGCCGTGGTG 2486 30 100.0 37 .............................. TTTCTTGGCATGGATTTATCGGTGAAGTAACTCACCC 2419 30 100.0 36 .............................. CCACAAAACTAGGACTACATTTCACAACTATTCAGC 2353 30 100.0 35 .............................. TAGCACTCTCGATAGAATCATGTAGTTCGTCAATA 2288 30 100.0 38 .............................. ACCGGAAGGACTAAAGAGCAAAAAGAAGCAGATAAAAC 2220 30 100.0 35 .............................. CCAAAAATATCCGGCAGTGTCTGGTGACTAATTAC 2155 30 100.0 37 .............................. TCGGGAAGGTGGGGGAGTAGGATGTATCCAAAGGCAG 2088 30 100.0 37 .............................. CTGCGCAAATAATGGCTTATTATTGTCTGATCAGCTA 2021 30 100.0 37 .............................. ATGTAATTGATTTGCCGTTATCGGTTTCAATACGCCA 1954 30 100.0 38 .............................. TATACGATGGGTAATACATAAATCCATTTTAAATTTCC 1886 30 100.0 37 .............................. AACCTGGGTCATGCCGCGGTTCTAGTCCTACTACCGT 1819 30 100.0 37 .............................. CCGGTGGGTGAGTTGTTATACGTTGGCCGCTCTACCC 1752 30 100.0 37 .............................. ATAAGGCTGGTGGTCATTGATGTGGCGAAAGGTAAAA 1685 30 100.0 35 .............................. TCTTCATCCAGGAAGAATTCTTTAGGCTGTCGGCA 1620 30 100.0 37 .............................. AATGCAGCTTTAGGCGACCAAGAAATATAATCATCAC 1553 30 100.0 36 .............................. ATTCTCTCAATAGCAGGAAATTCATAGACTTTCATT 1487 30 100.0 36 .............................. CGTATAACCCACTGTCTCTGTAGTCCTTTACACGTA 1421 30 100.0 36 .............................. TTCACTTCGTAATCAACGGCCTTTTCCAACATCCCT 1355 30 100.0 35 .............................. TAAGGCAGCACGGCCATCGTGATAGGCAAGCATGT 1290 30 100.0 38 .............................. TGAGCAGGGTAATAGCAAGGATGAGCGTAGGGTAGCAA 1222 30 100.0 38 .............................. GGCGTAGCCTTCGGCCTTTAAGAACGTCTTCATGCTTT 1154 30 100.0 36 .............................. GATGCTGCACCAGGCTACCAGGAAAGTGGATATAAC 1088 30 100.0 35 .............................. TCTGACGAACTGTCCCAAACGACAGCACGATTGAA 1023 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 36 30 100.0 37 GTTAATAGGCTACCTATAAGGATTTGAAAC # Left flank : CTGACCAAAAGTTTAATGTAACATTGATTCCCTGTTCTTTGAAGGTTGGCACATTTTCAAAACCCGGGATAGTTACTCTATTCTCATTGACCACTCCCAGTACTCTGATTGTACCATTTTTTACGTGCTCTTTTAGAAGCATGGGGACGTACATTTTGCTTCTTTTATTATGTTTTTGCGAAGCAAAATGTGCATTCCTACGCTTCTTTAAGTTTTCTAAAAAAGAACCAACCTTCACAAATGAAGTGTGGTTCTTTTTGGAGTATGGAAGGATATCTATAGAAACCAAAAAACTTCAGGAGGAAAATACCAAGTTATGACAGAATACATTTCATAAACCTAACTAGGAGTAAAACATGTCGTCGATATAAGGTAGCGCAAAAATGCCGGGAGGTCGACGACAAGACAGTTCAGCTTTTCCGCGGTTTAAAGTTTAAGCAAGAAGAATATAGTCAAAACAAGAAAAAGTATAAAGCCCCGTGTTTTCTTGCGTTCGATGG # Right flank : AACCGGTCTATAGTCGACAGGGAGGGACAAACGGGGACGTTCCTTTTTCGTCCTAAAAATGGTAAAATGTAAAAAAGAGGTGATAAAAATGTCCAGACAGGCCAGAAAGTTAAGCGCTACGGGTTATTACCATATAGTTTTCCGGGGAATAAATCATCAGAGCTTATTTGAAGGGGACAGCGACTTTTTATATTTTATCGAAAGCTTGCAGCAAATAAAGGCTGAGATGGCATTTGAGATACATGCCTACTGCTTAATGAGTAATCATGTTCATTTTTTGCTAAAGGAAAATAAAACAGGTGATATCTCACAAATTATGATTAACGAAATATGTAATGTACTTTAATAAAAAATATGAGCGAAGCGGAGCATTAATCGCTAGTCGATATAAGAGTACCCCCGTAGAAATTGACGAATATTTTATACCGCTGATCCGTTATATACACCAAAATCCCGTAAAAGCTGGAATCGTTGGAAAACCTGAAGAATATAAGTTTAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAATAGGCTACCTATAAGGATTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.40,-1.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 15508-12887 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSLL01000021.1 Sporomusa acidovorans DSM 3132 SPACI_contig000021, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 15507 30 100.0 36 .............................. CGCTATTGCGGCTGCCGGAATAGATAATGCCGCCAT 15441 30 100.0 38 .............................. CTTCCATAAGCTTCCATATAAGCCTGAGTAGCATTTCG 15373 30 100.0 36 .............................. CTCGATAATCAGGGAAAGGCATTTAATATGGGCATT 15307 30 100.0 37 .............................. GATGAGAATACAAAAGTCGGAGAATATGGGAAAAATC 15240 30 100.0 38 .............................. ATCAAGAAATGCAGAAGTATTGAGGCGAGTAAATGACA 15172 30 100.0 37 .............................. AATATAGCAATAAATTTAAACGATGGTTTTCTAGGTG 15105 30 100.0 36 .............................. TTCCCTCCTTCTTAAACTCCCAGGAATTATTGCCTT 15039 30 100.0 36 .............................. TTACCTTCAGCGGAAATAGTCTAAGAGAAAAGCCGG 14973 30 100.0 37 .............................. AGAAGCATATTGCCGAGGGAATCAAGGCCCAAATAAT 14906 30 100.0 38 .............................. CACTCAGGATTTGCGGTTCTCATTGCCAACTTTTGATA 14838 30 100.0 36 .............................. TTTATGTGATAATATGGATACATCAGATAAATAAAC 14772 30 100.0 38 .............................. CTATGATCGGCGCAAGGCATATATCGAATTATCTTCAG 14704 30 100.0 35 .............................. GGAGACCGCCAAGCAATATCGCAATCAGGCGCAAA 14639 30 100.0 36 .............................. CCTCTATCCGGGTCATGTACAGAAAGGCCTGCCTCC 14573 30 100.0 36 .............................. TCTTTCTGATCGGAGGACAGTCTACCTACCTGGCGG 14507 30 100.0 39 .............................. CTGCGAATAGGTCAGCGCCCGCAAGTATTGGCTTTGCCA 14438 30 100.0 37 .............................. CTATGATCGGCGCAAGGCATATATCGAATTATCTTCG 14371 30 100.0 35 .............................. TACATTGTAGTTGGAGAGGAGGAAAACAATGAATA 14306 30 100.0 36 .............................. CCTCATAACCACCATTGGGATCATGAGTAGAAGGAT 14240 30 100.0 35 .............................. TGGGTAACATCTACTTGTTTCTTATCTATTAACAT 14175 30 100.0 35 .............................. CCGGCTGGCGGCGACTGGCGGGATCTGCAGAACAT 14110 30 100.0 36 .............................. GCGGCTAAAGGTGGCACTGCATTGCCTATTGCTTCC 14044 30 100.0 37 .............................. TAGACAACATTCCTTGGGCAGAATTAGATTGTTTTTG 13977 30 100.0 37 .............................. CTATGCCGCCTAGCCATTTCATCCGCATAATGTCGCT 13910 30 100.0 37 .............................. TCGGTTTTCAGATCGACAAAGCCCAGCTTTCCCTTGT 13843 30 100.0 35 .............................. CCACGATTCTCCGTGATTCAGGCGTATCGATGGAA 13778 30 100.0 38 .............................. GCTGCAATAGCTGTTACCCCATGCTGCCTAAGTTCCTT 13710 30 100.0 38 .............................. GCGAAGAAAGCGTCATATTCGGCGGCAATAGTTCGCTT 13642 30 100.0 36 .............................. CCATTTCGGCACCAACCAGTAATTTCCTACAGAAAG 13576 30 100.0 36 .............................. TGACTGTACGTTGCACTTGAGAAGGTTTACGGCCTG 13510 30 100.0 36 .............................. CTGCAACCGATACTGTAACATGACTTTTTTAATGTT 13444 30 100.0 36 .............................. CAAGAGTTTTCCAAAGATAAAATCTATGATGCGGTC 13378 30 100.0 38 .............................. TCTGGAAGATTATTCGTTTTATCTGTATCTTTATGATT 13310 30 100.0 37 .............................. AAAGCCTCTTCGTCCAGTTCCCTGCGGCTGCGGCCGC 13243 30 100.0 35 .............................. GCAGGATAGGGCGAAAGAATTGGGGGGCAGAATCC 13178 30 100.0 34 .............................. TGTGTCGGTAAGCTGCAGCGGTCCCGCATTGACC 13114 30 100.0 37 .............................. AACAAATGGACTTTCTGGCGCCTAACCTTCTCCGAAT 13047 30 100.0 36 .............................. TTTAAATCGCATTGCGAAAACTCAATTTATAAATTC 12981 30 100.0 35 .............................. CAAGGCTTGTCCGTACTACCATTCAGCCTACGCCA 12916 30 96.7 0 ......................A....... | ========== ====== ====== ====== ============================== ======================================= ================== 40 30 99.9 36 GTTGTTAGGCTACCTATAAGGATTTGAAAC # Left flank : CACCTGACCGGGATAGCTCAATATGATATAATTGTACTAAAATAGCTGCCAAAACCGGCAGCTTTATTTCTATATCTAGATGTAGACTCGGCGTCCCATCTGGACAGGTATGTTATCGTTAGACGTTGGTATGGAAGCATGGGGACGTATATTTCGCTTCTTTTATTATGTTTTTGCGAAGCAAAATGTGCATCCCTGCGCTTCTCTAAGTTTTTCAAAAAAAGAACCAACCCTTCACAAATGAAGTGCTGGTTTTTTGGGGGCATGGAAGGATATCTGTAGAACCAAAAAACTTCAGGAGGAAAATACCAAGTTATGACAGAATACATTTCATAAACCTAACTAGGATTAAAACATGTCGTCGATGTAAGGTAGCGCAAAAATGCCGGGAGGTCGACGACAAGACATTTCAGCTTTTTTGCGGGTTTTAAGTTGAGTAAGAAGGATATAGTCAACACAAGAAAAAGCATAAAGCCCTGTGTTTTCTTGTGTTCGATGGG # Right flank : TAAATATAACATCCCAATGAGTTCAAAGTTTTTACGGGATTAAGAACAAAAAACTCCGTACGCAGTAAGACTTATAGATTATTTTTTAAAATCAGTGGTAGTTACTTGCTTTTCATTATTAATTTTGCTACAATGTAATTACAAAGTAATTACGTTAAAGGGTGATTAGATGAAAGCAGATGTTATTAAAATTGGTAATTCAAAAGGAATAAGATTACCGGCATCAATTCTTAAACAATGTGGTATTGACAAAAAAGTCGAAATTGAAATTAGACATAATAATATAATCTTAAGACCAGTAAAACAACCACGCGAAGGTTGGTCTGCTGCTTTTAAGGAAATGAGCAAACGCGGAGATGATCAATTACTTATTCCAGAAATTGACGTTGAAATCTTGGAGGAATGGGATAAATGATTGATCAGTATTCGGTATATTGGGTAGATTTAAACCCTACCAAAGGTGCAGAAATCAATAAAATGAGACCCTGTGTAGTAATCTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTAGGCTACCTATAAGGATTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.40,-1.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 5704-7400 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSLL01000046.1 Sporomusa acidovorans DSM 3132 SPACI_contig000046, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 5704 30 100.0 35 .............................. CCGGAGGATAAATTCCAACGCGAAGTACTGGACAG 5769 30 100.0 36 .............................. CCCTCCATTTGCGCTGACTATCTACCCAGCAAACGC 5835 30 100.0 38 .............................. CCAGTTTTAACCGACTGGCAGCGGTGGAGATTATTAAA 5903 30 100.0 37 .............................. TCAATAAAATACCGGTGGCTCTATGTGAATGCAGTAC 5970 30 100.0 35 .............................. TGGCAATAGTTTAAGAGAAAAACCGGAATGAAGAG 6035 30 100.0 35 .............................. ATAATTGGGTGGAGGGCACTGCGGAAAAGCACAAC 6100 30 100.0 38 .............................. CCGTTTGAAGTTTCTACTTGATAACGTGCAACTTTTAT 6168 30 100.0 37 .............................. CCAGCTTCCATAGACTCTTTTATAATCTGCGCAGCCT 6235 30 100.0 36 .............................. TAATCTTCTTCCATCAATACATTCTCGATGTCCTGT 6301 30 100.0 39 .............................. TATTCTCTTCATTCCGTACTATATCTACCTTCTCAGCAC 6370 30 100.0 38 .............................. CGAACCTTGTGACTGCTTCGCTGATGCACTCATTTGGT 6438 30 100.0 36 .............................. AAAGAGTTCAAAGCAAACCACCCAGGCGGGTACTAC 6504 30 100.0 35 .............................. GCATATTGGGATGATTGCGAGGAATGATCATGAAA 6569 30 100.0 37 .............................. TCTAACCATCTATAACTAGGAGGAGAGGGAATGAAAC 6636 30 100.0 35 .............................. CCATGGACAGTTAGTCTATATTCGCCGCCAGCTAG 6701 30 100.0 38 .............................. CCGTTCCAAAGAAAAAAAGTGGCGCTCCCTTCGGCAAC 6769 30 100.0 37 .............................. CTGTTGCACAAAGCGACTCAATTGCGCCTGGCCCTGC 6836 30 100.0 38 .............................. TCTGTTCGTCAATGTGTAGAGTTATATTCATGATTCTT 6904 30 100.0 38 .............................. CCCCTCCCTACATCCGAATTCCCGAATAAATCGGCGGA 6972 30 100.0 36 .............................. CTGATCAGTTGGCAAGGTATTGCCACTACTATCTTT 7038 30 100.0 37 .............................. CTCGGTCATATACTGGTTTTAGATATGTTTCAAGAAA 7105 30 100.0 39 .............................. AGCATTGCGAAGAAGTGGAACGCATTGGCGGTAAATCGC 7174 30 100.0 37 .............................. AAAATAAAATGACGTTCATAGGGGAAAAGGCTGGCGA 7241 30 100.0 35 .............................. GCATGAATCAGCACGTATTCTACATCAACGTGAGC 7306 30 100.0 35 .............................. CCCCGAGATGGTAGCTCAGGTTCTCTGGTGTTCGG 7371 30 73.3 0 .....................GGCGA.CCC | ========== ====== ====== ====== ============================== ======================================= ================== 26 30 99.0 37 GTTGTTAGCCTACCTGTAAGGAATTGAAAT # Left flank : GAAACTTTACAAGCAACGGCAATCATTGTTGAATACTCTAAGGCACGATGAAACGTGCCTTAGGGTATTACTTATTTCTTATTGAACGGAATTGAAAAAGTAAAAGGTGAGGCGGTATGCACAGTTTAGGAGGAATCACGGGGACGTACAATTTTGCTTCTTTTATTATGTTTTTGCGAAACAAAATATACATCTCTGCGCTTCTCTAAGTTTTTTGAAAAAAGAACCAATCCTTCATAAATGAAGTGCTGGTTCTTTTGGGGATATGGAAGGATATCTGTAAAAAGCAAAAAATTTCAGGAGGAAAATAACAGGGTATGACGGAATATATGGTATAAAGCCAGTCAGGAGTAAAACATGTCGTCGATGTAGGGTAGCGTAAAAATGCCGGGAGGTCGACGACAAGACGTTTCAGCTTTTTCACGGGTTTTAAGTTTTAGTAAGAAGGATATAATCAAAGCAAAAAAAGTACAAAGCCTGTGTTTTCTTGTGTTCGATGG # Right flank : CTTCACAGATGCCATTGCTTTTAGTTTTCTAGAAGAATTAGAAAAAGGCCGCTCCGCAGTGCAGTGGCATAGGGGGACAAGCTATGCATTTGGATATCTATTTTCGTATTGCCGATGGAAAAGGGCTGGTTTTGCCGGTCAGTTACAATTACCTTGTGCAAAGTGCATTATATCATTCCCTTGATATAGATCTGGCCGAGTTTCTGCATGAAAAAGGCTATAGGAACGGCAGCCGGACATTTAAGTTGTTTAGTTTTTCCCTGCTACAGGGACCTTATCGCATGGACAAGGTTAAAAAGACAATCGAATTTGACCAGGAGGTCAAGCTGACGATTTCTTCGCCGCTGCCCGATTTCTGCCAGTCCTTGGTCACTGTGCTGATGACTAGGGGCAGCATGCGGCTGGGATCGCAGAATGTGATGATCGAAAAGGTGCAAGCCCGCCAATTAACGGTTAACGGGGAAAGGGCGATTGTCAGAACCCTGTCGCCGGCGGTACTT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTAGCCTACCTGTAAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 17060-18746 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSLL01000046.1 Sporomusa acidovorans DSM 3132 SPACI_contig000046, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 17060 30 100.0 37 .............................. CCCCATACGATCACAGGCCAAATGTATGGACTGCCAG 17127 30 100.0 36 .............................. AATTCATTTTGATTCTCCTTTCAGCATAACCCCGGC 17193 30 100.0 36 .............................. CTCCTCTTCACGCGCCGCTTTATCCGCATACGCCTT 17259 30 100.0 36 .............................. TCTGAGTGTTAAACGGCGGCAGCGCAGTCCAGAATC 17325 30 100.0 37 .............................. TATCCATTCCAAAGAACCACCAAAGCATTCTTGCTAA 17392 30 100.0 36 .............................. ATCGTCAACAAAATAAATGCCGTGAGTGTGCTGATC 17458 30 100.0 37 .............................. TACCGAGAACATCCACACGATTTTATTTTCCCCGCAA 17525 30 100.0 35 .............................. TATGCATTAGCTTGCCGGCGTAAGTGCCGATAAAC 17590 30 100.0 38 .............................. ACGAAATAACTGGATATACACTAAATGAATATGGGAAA 17658 30 100.0 37 .............................. TCGCAGGCCCGATAAGGGGCCGGGCAAAGGAGGATGA 17725 30 100.0 37 .............................. ACTGTTGTCGTGCAATTCGACCCTCCGCAACCAAAAT 17792 30 100.0 35 .............................. GTATAACCGTCCGCAGGCTGTACACTTGCCCCACC 17857 30 100.0 35 .............................. TTGGTAATGTCCGGGCAAGGTAATACCATAGGCAT 17922 30 100.0 37 .............................. CACCGCCAAGGCGATATTGGACCGACAAATTGCCCGC 17989 30 100.0 35 .............................. ATCAAAAACACGGGATAGCTCCGATACTGTTGTTA 18054 30 100.0 37 .............................. TTAGCACCTTATCCCCATCATGGATTCGTGCGCCCTC 18121 30 100.0 36 .............................. ACGGCCAGAACTTCGGTATGTGCGGTAAATCGATAG 18187 30 100.0 37 .............................. TATCTGCATCCAGACCGCCTTCGACCACTGCGGCAAG 18254 30 100.0 37 .............................. TATTCGCCGCGAGTCATAGGCTCACCATGAACAATCT 18321 30 100.0 36 .............................. AAGAACAGATCGAAATCATGAAATTCTATCCGCATA 18387 30 100.0 35 .............................. ATCTATAAGGCAAGACCGTGGGAGCAATACTTCTG 18452 30 100.0 38 .............................. CGAAGCTGAGCAATAAAAGAGGCCGCACTCGGGTCAAC 18520 30 100.0 35 .............................. GCAGATCAGTAGCTTCCTCGCCTAGATGTTCTAAT 18585 30 100.0 36 .............................. CTGGATGGCTATGAATGGCGGAAACGCGAAAGAGAA 18651 30 100.0 36 .............................. TTAAAACATTCCGAGAAACTAACCACCGTCAACAAT 18717 30 96.7 0 .........................T.... | ========== ====== ====== ====== ============================== ====================================== ================== 26 30 99.9 36 GTTGTTAGCTTACCTATAAGGATTTGAAAT # Left flank : TAAGCTAAAAATGGAACTGGACAGGATTATTGTTGACAACGAAGATTCAGTAATCTTTTATACCTTACGGACCACCCGTTATTCTCAGCGGGAGATTATGGGACTTCGCAAGGGAGGGCAGGACTTGATCATCTAAACTTTCGTCACTGCGTATTTCGGGGGATGTCAGATGACGGAGTTGGTGACATTCCTAGAGCAGCGAGATAGGATGTGGATCTGGGGCTGGAGTTCCGTCCCCTCGACACCCTTAAATAACTCAAGGGTTATAGGGTGATCCCGGTAAAAAACCAAAAATTTCAGCAGGAAAATACCAAGTTATTCCGGAATATGTTTCATAAACTTGGCCAGGATTAAAACATGTCGTCGATGTAAGGTAGCGTAAAAATGCCAGGAGGTCGACGACAAGACATTTCAGCTTTTTCGCGGAGTTTCAGTTTGAGCAAGAGGATCTAGTCAAAGCAAGAAAAAGTATAAAGCCCGTGTTTTCTTGTGTTCGATTG # Right flank : TATATAACCGCCAGTTGTAGTTCCAATGCTGGTAACACCGTTGTTAGGCTAGCAAAGGAAAAGATGGTAAGTATAGCCAATGGGTAAATATAACCGCATAGTCCATTCAGTAGCGATACGCTCCATTCTATTAATGAATGGAGTGTTTATTTTTATGTACTATTATGTATTTTATATACTTAAATTTACTAAAAGTGGTATAATTTTAATTACTAAGTTATCTAAAAGAGGGCTTATTATGGAAATAGATTTAAGTCAATTACCTATTTCACAACTATTTAAAGATTACAAACATCGAATAGAAAGTAAATCTAATCGAAAAATATCTTTATTATTAGAAACGAATGAAATAGTAAATTATCCTGCAGCATTTTATCATTCTAATGATAACTGCATTCTAGTTCGGGTTAACCCAGGATTAGAGAAGGATATGTCAATATTTGAACCAATTATTGCTCATGAAATAACTCATGGGTACTTGAAATATAAGTGCAAGTATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTAGCTTACCTATAAGGATTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 167460-166770 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSLL01000094.1 Sporomusa acidovorans DSM 3132 SPACI_contig000094, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 167459 30 100.0 36 .............................. ACAGTTACCACAAATTCGTTTTATCATGCGCTTTCA 167393 30 100.0 37 .............................. TACAAAGTATAATCGCGAAGAGACTGATTCAGTACCC 167326 30 100.0 35 .............................. AAGTACATCTCGTGTCCTAGCCTTTACTCTCTCAC 167261 30 100.0 34 .............................. GGATAAAGCAATATTTGTAGTTGAACATACACGT 167197 30 100.0 37 .............................. AAGTTCAAACCATCGAAGGTATTCAAAGAAGAAGTCA 167130 30 100.0 37 .............................. AACTTTTGGGTACATTGGATAGCGAAAGTAATGGCAT 167063 30 100.0 36 .............................. CAAGATTATCTGAAGTATCTTAAATTTATGCTTGCA 166997 30 100.0 36 .............................. TTGCTCCCAGGCGGTTTCGTCATCCATGATTTTTAG 166931 30 100.0 36 .............................. TCAAAAATATAACTGGTCTTCGGATCGTTACGAGTT 166865 30 100.0 36 .............................. GGCTAATCTTGCGATCGATGCTCAGGGCAAAGCCAA 166799 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 11 30 100.0 36 GTAGTAATTTAAACATTGTGGAATGTAAAT # Left flank : ATTAATAGCTAGTCGATATAAGAGTACCCCCGTAGTAATTGACGAATATTTTATACCGCTGATCCGTTATATACACCAAAATCCTGTAAAGGCTGGAATCGTTGGAAAACTTGAAGAATATAAGTTTAGCAGTTATCGAGACTACGTGCAGGGCGGGAGGTTGACGGATACAGGATTTTCATTGAGCCTATTGGGGAGAGATGAGTGGGTCCGGTTACATCAAATGAGTACGGATGATGACTTTGATGTATCAGGGAAGATAAATCTATCCGAAGATGAAGTACGTCGCAAAATATTGCGATCAACGGAGGGACGCGAACCACATGAAATAGCGGGATGGTCCAAGCCAGAACGTGATGCTATGCTAAGGCAGTTGAAAGAAAAAGAAGGATTATCCATTCGACAGATTGAGCGTGCAACTGGAATTTCTCGTGGTGTGATAGCAAGAAGTTGACGGAAAAGGAACGTCCCTTGATGTCTCCATTGCCGGGAATGTGCAC # Right flank : TATATATGTTATGAGATTGCAAAACTGAATAATCCGGAGCTGATTACCCCGCCTGTCCGGTCACTGGAAACCGTCATTCCGGTTTAAAAGAAACCAACCCTCCGGTGTTGGAAACCGTTTAAATATATCTTCCTTATAATGTAACCATGCACCAGATGGTGTAAATACATTATAAGGAGGTCATGATATATGACCAAGTATCGTGAAATCCTTAGGCTACATAGCTTAGGATTCAGTCAGCAGAACATTGCATACAGTTGCAGTGTCTCTAAGAAGACGGTGAACATCGTCCTGAAAAAGGCAAAAGAGAATAATATCTCTTGGCCACTTGATGCCAGATGAAGTGCTTGCCGGGATTCTGTTTCCGTCAAAAGGCAAGCATTCAGACACACCCACAAAGCGGATGCCTGACTTCGCCTACATTCGCAAGGAGCTTCTCCGCAATGGTGTAAGCAAAAAACTTCTGTGGACGGAATACATGGAAGACTGCCGCCAGTCAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTAATTTAAACATTGTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 271705-269411 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSLL01000094.1 Sporomusa acidovorans DSM 3132 SPACI_contig000094, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 271704 30 100.0 35 .............................. CTCATCAGTCAATTCTGGAATGCTTTCGATTTCCT 271639 30 100.0 37 .............................. TGTCTATCCATGTCAACGCTGCAGAGAACCCGGACGC 271572 30 100.0 36 .............................. CGATATCAAACGCCGATAGCATGGGATGTAGACTAT 271506 30 100.0 36 .............................. CGTTTCTATGAATTTGATCCGCTTATGCCCTTCGGT 271440 30 100.0 38 .............................. ACTTTCATGCCTGATTTGCCAAGGCTGATCTCGCACAC 271372 30 100.0 36 .............................. CCAATACACTCTTAGAATTAAGCGACTGCTATTTAT 271306 30 100.0 38 .............................. GAGCGAAACTCTTTTTAAGATGCAAAAAAAAAGAGGCG 271238 30 100.0 38 .............................. ACCGCCCTGGCTTTTTCTGCCGCCAGGGGGGCTAACCC 271170 30 100.0 35 .............................. ACCCTAAAGACGGCCTAACCGCCGCCCAGGCCAAC 271105 30 100.0 37 .............................. TCAGCAACATCATTCACGGACGCACGCAAAGCCGGAG 271038 30 100.0 36 .............................. CTGTCGGAGTAAAATTCACTAATTCTTCCAGGGTCA 270972 30 100.0 36 .............................. AGATATTGCTGACGTATTTGTTCTGCCTTTTCTCTC 270906 30 100.0 36 .............................. ATGAGCAAAGAGAACGTCTTATTGCGTATTGCAAGG 270840 30 100.0 37 .............................. ACCGTGACCTCACTAAGCACTGCCGTTTGTAGGCCTG 270773 30 100.0 35 .............................. ATTTGCCCAGTGCCTCATAGGCTGATTTTATTTCC 270708 30 100.0 37 .............................. CAAGCTAGGACGGTGATATGAATGGATTATAATCAAC 270641 30 100.0 38 .............................. ACGTTTCTGTTACTCAGACAGGGAACATTGTTAGCCTA 270573 30 100.0 35 .............................. GCTTCTTAGGGAAATTAACCCAACAGAGCAAGAGC 270508 30 100.0 36 .............................. GCAGAATGGGCGCACACAGGGTTTAAGCGGCGGAGA 270442 30 100.0 37 .............................. TGTCTATCCATGTCAACGCTGCAGAGAACCCGGACGC 270375 30 100.0 36 .............................. TACCGATAGTCATAAAGACGAGCATCACAAATTCAG 270309 30 100.0 37 .............................. CCCACGTAGGCAGTCGGAACTACCACAGACACAAAAG 270242 30 100.0 36 .............................. GCCAGATTCCAAGTATGATTTCGAGCTATGTTTCTC 270176 30 100.0 36 .............................. CTGGCAAGAAATCGGCCAAGCCTAAGGCACCAAAGG 270110 30 100.0 36 .............................. GATCGTAGCAACTTTTCCAGATGGTGCAAAAACAAC 270044 30 100.0 37 .............................. CCGGCTACCTATCGACTATAGACCGATTCAATGACGC 269977 30 100.0 38 .............................. AAAATCCACCAAAATTGCAGCCCGTAGCCAGAATGAAC 269909 30 100.0 35 .............................. TAAAATAAGGCAATGACAAAAAACCGTCACTTCCA 269844 30 100.0 39 .............................. ATCCGCATCGTTCAAATACTTCCAGCAGAAACATGCCAC 269775 30 100.0 38 .............................. TATCTATATTATTTGGGCCAGAATTAAGGTATGTTACT 269707 30 100.0 38 .............................. GAGACCGACACCGATGAAAGTTTACAAATGCGCCTCAA 269639 30 100.0 36 .............................. GACAGTGGCTACTGCCAGCTCCCCAACCGTCCGATG 269573 30 100.0 37 .............................. CTCATTTCTGCGTAAAAACAAAGCCAAGATATCCCGC 269506 30 100.0 36 .............................. AAGACCAGCAGCACCTGGTTGTCGATCTCCTCCAGC 269440 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 35 30 100.0 37 GTTTTTAGCCTACCTATAAGGAATTGAAAC # Left flank : CAATTGCAGGCGATGCGGGAAATCTTGCAAGCTGAATCCGGGATTCAATCTGGGATTTCCGTTTTGCACAGCGGTGACCGGGTCATTAAATTACTGGGCAGCAGCGGCCAGCAGCTAACGGATGTATGCCAAAGAATGTGCGCCTACATCCGATAATGATTTTTCTACCCGGAGTATTTTAGAGGAAGCGTACCTAGTTTTTGAAAAAAGTGGCCTTTTTAAAGGAAAGGTTATTTTTTCTTTCCCATAGATTTACACTCCTGTAAAAAAACGAAAAACCGGCAGGAAATACCCTCTTATGCCAGAATATATTCCATAAATCTATCCAGCAAGGTCTATGTCACCCCGGCCTTAAAAATGTCGTCGATGTGAGATAGCGTAAAAAAACCGGGAGGTCGACGACAGAACTTTGTAGACTTTCCGCGGGTTTTTTGTTTGAGATAAGCAGTGGGTGTATTCAAGAGGGAAAATATAGCCTTGTATTTTCTCGTATGGAATGG # Right flank : TTTTGCCGTCTGCCCGGGTTCACCTGGTGGACGGTTTTTTCCATTATAAGGGAATTTTAAAAGCCTGTGACGTTTTTTGTCGTAAAAGGAAGGGAAAACTGGAATTAATGAAGATAATAAATATAGAGGGGGGATTAGAATGGAAAAATTATGAGTATCTTTATTGCAATGATTCCGCTGCTTACAAACAGCAAACAAGAGAAGTGGATGCATCTTGGGAGGTTCTAACACATGGAAAATGATAGTTATACACAAACAAATGAGGATATTTTAGCCGCTTTTAAATTAGTTCTACCATATTTTAACCATATTGTGCGAGAGGATATGGCAGTCGGACTAACAGATTTAAAAAAATATTTAGGTTATTGCAGAGCTAAAGGATTTGAACTGGATTTGCGAGAAGGTAAGCCTATTATAGGGATACAAACAGTGGAAGAAGCAATCAGCACTGGCAAGGATACCTATGCAGATATTCCCGCTGAAATTTATGGCAGACCTAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //