Array 1 20848-18308 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSVD010000005.1 Lactobacillus delbrueckii subsp. lactis strain 12107 L_I_202_12107_c5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 20847 33 100.0 34 ................................. AGTTTTGACACGTCGTCTTGTGCCTTTTCGCCCA 20780 33 100.0 32 ................................. AACGACACCTGAAGTCCAGGCGGATCAAACAA 20715 33 100.0 36 ................................. AAAGTGTCCGTCACCTCTAACCACGCCTATCAAGTC 20646 33 100.0 33 ................................. ATTAGTAAGCCCTCCTTGCAAGATTACATCAGT 20580 33 100.0 35 ................................. GTCGCCCACTTGGGTCACTTGGACAAGCACCATGT 20512 33 100.0 35 ................................. GTTGAAGCAAACAATATCAATGCACAAAAGACCAG 20444 33 100.0 35 ................................. AAGCGATCTTGTCCGGTTGGTCAAAGGCAAGACAG 20376 33 100.0 35 ................................. AAGCGATCTTGTCCGGTTGGTCAAAGGCAAGACAG 20308 33 100.0 35 ................................. ATCTAACCCAAAAGAAGGAGCGTCAGAAGAGATAA 20240 33 100.0 36 ................................. GACCAGGCTGTCCCAACATTTATCCGGCAAAAACGT 20171 33 100.0 37 ................................. TAGTTAATAGATGGCATCAGCGTGATGATCGCTTGCC 20101 33 100.0 36 ................................. TTATTGACAGTCAAGCAAAAGGTAAGAACGTTGCAA 20032 33 100.0 35 ................................. TCAAACAGGTATTAGGTGATAAGCCAGCAGATAAG 19964 33 100.0 33 ................................. CCACTGCTAAGACATTTAACAACTGTTCTTTAG 19898 33 100.0 36 ................................. ATGACGGGCATCGGCTTAATTTCATGGGCTTTTGAT 19829 33 100.0 37 ................................. CAAGTTTGGGTTGCCGAACCAATTTAGCGTGTACGGA 19759 33 100.0 33 ................................. TGCAATGTAGGATTAAGCACTTGATCGCACAAG 19693 33 100.0 37 ................................. TCAAGGCCTTTGAGCCAGTCTCCCCAGTCAAAGCCGC 19623 33 100.0 35 ................................. TTATTGTGCGTGTACAAAGCCGCAAAGCCAGCGGC 19555 33 100.0 34 ................................. CAGATAGCCCGGCCTTGTCGAACGTCTCAGCCTG 19488 33 100.0 36 ................................. AGCGCATCGGTCATAGCTGATGCCAGGTCAGTCAAG 19419 33 100.0 35 ................................. AACGCTCCTACGGCGTAATCGGCGACCCGGAAAAG 19351 33 100.0 34 ................................. GGTGATAACCTCTGCGGCGTATTCCCGCTTTTGG 19284 33 100.0 35 ................................. TTCTGGCCACCTTGGCCAGCATGGATAACGGCGGT 19216 33 100.0 33 ................................. CCTGCAACTAAATCCTGTGTAAAAGCCGTGCTG 19150 33 100.0 37 ................................. TGGCGACTATGATATGCACGACTACCGGATGCTCTAC 19080 33 100.0 35 ................................. AACTTGATGGCAAGACTTATCCGGTCTACGCTAAC 19012 33 100.0 34 ................................. TCAATCCATGCACTGAGAGTAACCGTTTGCCCAT 18945 33 100.0 33 ................................. ACTGACTGGTGAAGACGTCAACCGCTTGCGTAG 18879 33 100.0 35 ................................. TTCTCCCAATCGCGAAAGTTTGGCTATGACATCAT 18811 33 100.0 34 ................................. GCGATCGGTGGCACTCTAGTGGCGGCTGCTTTGG 18744 33 100.0 35 ................................. CCGCATAACTGGCAGACAGGTTATTTTATTGACAC 18676 33 100.0 35 ................................. AGTCGATCACTGAAGGCGACGTATCCGTATCCTTT 18608 33 100.0 34 ................................. AACTCCATTGCTGGCGGAGCTATGGTCGGCAACT 18541 33 100.0 35 ................................. ACAGGCATGGCTACGCAGTTCAAGACCATGGGTGA 18473 33 93.9 33 ..............................G.G GCTGAAGGGAAAGTAGCAGCAGAAAGAAGAAGC 18407 33 100.0 34 ................................. ATTTGCTGGTACAAAAGTAACAGAGTTACAACAA 18340 33 84.8 0 ..........A...AA....T......C..... | ========== ====== ====== ====== ================================= ===================================== ================== 38 33 99.4 35 GTCGCATCCCGCATGGGATGCGTGGATTGAAAT # Left flank : CGGATACCCTCCGTTTTTATGGAAGTAAGTGATTGTAGATGATGATGGTAATTGTCAGTTATGACGTGAATACTGAAACTGCTTCGGGAAAGAAGAGACTAAGAAATGTTTCCAAAATATGTAACGACTATGGCCAAAGAGTTCAAAATTCAGTATTTGAGTGTCTTGTAGATTCTACAAAGCTTGAGGAAATGAAGGAACGCTTACTAAAGGTATATGATGAAGAGTGCGACAGCTTGTACTTCTTCAATGTAGGCAAAAAATATGAGAACAAAGTTCAGTCTTATGGGTGTAAACAAGTATTAGACTTGGGAAAGCCAGTTGTCTTCTAATTATCTAGACAGTGCGAGTGTGAAGCTAACAGAATTAGGCAGAGGATTCGCACTGTTTTTGACTATTTTTTTGTAGTCTTGAATATAAAATTGCAGTTTTTTAATGCTTTTTATATTTTGTATGCCCAATATTTAGCTGTGAAAATGCTTTTTTTACTAAATGTTGCG # Right flank : ATCGCTTAGATATGTGGATGCTTGATGGTCAAATTCCACTAAAAGCACTCCCTAGCGGGGTGCTTTTTAATATTTCGCTAAATCAAACGCTTCACCAAGCAAGCAGGAAAAGATTATAGTAAAATATACTGGTTATAAAAAAGCTGAGCCAAGCTCAGCATCCCCAAAACAAAACTTAGTTGAGGAGAACAAACACATGCAAGATATTTATATTGTTGCGGCCAAGCGAACTCCATTTGGCCGTTACCACAAGCAATTGGCTGACTTTTCCGCCATCGACCTGGGCCAAATCGCCCTGCACGGCGCATTAAAAGAAGCCGGCCTTGACGCCGAAGCCCTGGATGCCCTCTTCATGGGCAATGTCCTGTCTGCCGGCTTAGGCCAAAACATGGCCCGGCAAGTTGCCCTAAATGCCGGGATGCGGCAGGACTCAGTCGCCGTGTCCATCAACGAAGTCTGCGGCTCCAGCCTCAAGGCTGCCCGCCTGGCTGAAGCTCAAA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCGCATGGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.60,-9.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2198-906 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSVD010000074.1 Lactobacillus delbrueckii subsp. lactis strain 12107 L_I_202_12107_c74, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 2197 35 75.0 39 .C.T.....C...C.G.-...G...T.T........ GCATAGTGCGGATTGTAAGTAGCGACAAGCTTTGTTGCA G [2184] 2122 35 80.6 35 C..T.-.C......T...................AT GTGCAAAGCAGAATGAGTCTCCGTAAGGAATAAAA G,C [2088,2091] 2050 36 94.4 36 ....C..C............................ GAAAATAAAAAAAGTTGCAAGCGAAAGCTTGCTAGA 1978 36 100.0 36 .................................... AGAAAGAGGTAATAAAAATGATTTCCGAAAAAACTA 1906 36 100.0 43 .................................... AATACGACAACACTTATAACTATTGCGGTTATCTTGATAACTA 1827 36 100.0 37 .................................... TATGATGAAGATTTTAGAAAAGAGATGGAAAATTTCA 1754 36 100.0 37 .................................... CCGAACAAACTAGAAAAGCTATGTCAATAGATATCAT 1681 36 100.0 40 .................................... ATAATAATTGAAATGAAAGAGGTAAACAAAATGGAATCTA 1605 36 100.0 41 .................................... TCACCTAACCGAGCAACAAAAAGAAAAATTCCTCACTCACA 1528 36 100.0 39 .................................... ATTAAAATGAATTTAAAAGAAGTTTTGCAAGAAATTACG 1453 36 100.0 36 .................................... GCAAAAGGATAGCGTGATCAGTCACATGGACGACGT 1381 36 100.0 38 .................................... TTTACTACCGTTCAGTACTCGTTAGATGTTAGTCAAGA 1307 36 100.0 37 .................................... CTGTTAGACTTGAGACAAATCAAAAAAAGGAGACTAA 1234 36 100.0 37 .................................... AAAATAAAAAATATTTTTTTAAAAAATAGTAGACATT 1161 36 100.0 37 .................................... TTTTAGGAGGTAACAAAATGGAATTAGAAGAAGTTTT 1088 36 100.0 38 .................................... TCTTTGAGGATCAAACGCTCGTTTGTGAGGTATTCGTA 1014 36 100.0 37 .................................... GACAGAAAAAAACAAAAAGTTTTAAAGTTTTGCTTTT 941 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 18 36 97.2 38 GTTCTCGTCTCCTTCTAGCGGAGATAAGTTGTTAGC # Left flank : TGGCAAAAATCCGCACGCTGAAGCGTTTGATCGCCCGGCAGACTTGAACTAGATAAAGTAGCGATAATTGGATTAAACGGTTGGCCAGGATCTTATGGTTCAGCAAGTCATACAAGCCTTGGACCAGCTGCCCTTGAAAGTATGGTCCAGCGCAGCGACCATGCCGATATTGTAGATCAAGCCTGAAATAGTAACGACCACAAGAATTGGCGCTTCTTACCAGAAGTAGCTGCTCATTTTCTTGGGGTCGCGGGTATTTTCTGCTTCATCTCGCTGCCTCCTCTGACTGCAATTTTGCCCGCTTCTCTGCATCCGCTATCAGCATTTCCACCTTCATCATAGCACCGATTCTTCTTCAGTCTAGTCCATTTTGGACGGAATGAAGGAGGTTTTTTATACGAAAAAACGGCCAGCAACTGGCCGTTTGGCTTATGTCTCCTTTTAACGGAGATTGTGCATTGAAAATAGATTGATTAATAATATAGCTCTTTTCTTTAAAT # Right flank : AATTTTTGCTATTATTACTTAAACTTCCCACTTGCAAACGTGGGCTCGTACCTTGAAAATTCAATAGTTTAGCCAATAAAAAAAGCACAAGGCCTTTGTTCGCTTGATATAATTCAACTACAACATCATCAATATCAAACGAAAGGCTTGTGCTATGTCTAGTTTACCATTATTCGATACTAAGAACGAACCTAAAATTGCCCGTTCTGTTGAAAAGTTCTTCAAGGACTACAAAGTTATGGAGCTTCTCCGCAGATGTGGGCTCCGCAAGTCCAAAGGAATCCCGCTTTGGTCGATCCTTTCATACATCTTCAGTAATGTGTTTCCAGACAGAAGCATGTACATGCAACAGAAGTCTGGCAAGTGTACTTCTGGCTTCTCCAAGAACACCTACTATCGATTCATGCAGAACCCACATATCAACTGGCTTCGCCTCACTATTCTGCTAGCTGAGAGGATCGTCAATGGGCACCTGAAAGATCTGACTTCTGACCAACGTG # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCGTCTCCTTCTAGCGGAGATAAGTTGTTAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 484-1331 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSVD010000029.1 Lactobacillus delbrueckii subsp. lactis strain 12107 L_I_202_12107_c29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 484 36 100.0 38 .................................... TCTTTGAGGATCAAACGCTCGTTTGTGAGGTATTCGTA 558 36 100.0 37 .................................... AAAAAGCTGGAAGATGAAGGGCTAATTGTTACAGGTA 631 36 100.0 33 .................................... TAGCACGCTATGAGAAGGATAGCGGAAAATTGT 700 36 100.0 39 .................................... AAGAGTGTAAGGAAGAACGGAGGAAAATAAAATGACTAA 775 36 100.0 38 .................................... CGCCAAAAATGATCAAAACAACCGACAAAAACGGCAAG 849 36 100.0 38 .................................... ACTAAAGAAAAAGAATACATGACTAACTACATGAAAAA 923 36 100.0 41 .................................... TCTACAGCGATTTACTTAAATGGTCTGGTGATGAGTTTGCG 1000 36 100.0 35 .................................... TTGTAAATGACTTAGAAGAATTCGCCCAAAATTGC 1071 36 100.0 39 .................................... TCAAGACCTTGTTTGTGAAATTTTCGTTGATACTAAAAA 1146 36 100.0 40 .................................... TTTCTTAGAAAATCAACCATTTTTTAAACTTTTTCGCAAT 1222 36 100.0 38 .................................... TTGACGTTTCCAACTTTTACTAGAAAAAACGGGCTTAA 1296 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 12 36 100.0 38 GTTCTCGTCTCCTTCTAGCGGAGATAAGTTGTTAGC # Left flank : CAGAATTTACGGCAAAAGATGGGATATCGAGGTCTTCTTCAAGACCTGCAAGAGTTTCTTGAAGCTCGGTACTGAATACCATGGCCTCTCATATGATGCATTGACTGCCCATACGGCTTTCGTCTTTTTGCGCTATATGTTCATGTCAGTTGAGAAGCGAAATGATGAAGATGATAGGACAATAGGCGAGCTCTTTTATTGCATGGTAGACGAGCTTGCGGACATCACTTTCAATCACTCCCTTCAGATCATGGTAGAAGCCATGTTTGAGAGCGTGAAAGAGATCTTCCAACCGACAGAAGAGCAGATGGAAAGGTTCACCAAAGCATTCATTTCCCGCCTCCCGAAGTACATGCAGAGGCATTAACGCCATCACTAGCAGCTTAATTGAATATTTACTGGCTAAACTATTGAGTTTTCAAGGCTTCATAGTTCTTTTTGGTGTGGGAAGTTTAAGTTATTAAATATGTGCTGAGGCACGAGG # Right flank : CAGATCCTGTTTAAAACGTTATTACGTCGCGCATCCCCAAGCATTTGTCTCGTCTAAATCCTGGTCAACGCCCATCAAACAGCATCCCTCTTTGTCCTATTTTTGGACAAAAAAGGCACCTCTGCTAATTGAGAACATATAAATTATACCACACCAGATGCTACACCACGATCACCTTAGGTACTGACACTGCCTTCATTGGTGCGTCTGGACCCAAAATGTTAATCTGCTTGTTATTCACCTCATCTGGCAACAGATATAGAGTTATCATTCCATCATCTGGAACTTCTTTTTTCAAAATCCCAATCAAATGGTCTTTCGTAGTATCTGACTCCACCTCCCGTTCATACAGGCTGTACTGCTTCATGTCAAATCCCAACTCAACCAGCCGTTTCCTGTATTCCGCGGCTTTCTTTCGCTCTTCTTTGGTATTTCTAGGCAGATCAAAGCTTAAAAGAAGTACCATCATTTTCCTCCTTGAATGAAAGTCGGCAACTTCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCGTCTCCTTCTAGCGGAGATAAGTTGTTAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //