Array 1 1813703-1813914 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAQG010000001.1 Streptomyces sp. RLA2-12 RLA212_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1813703 29 82.8 32 TC.TC.................C...... GCCAAGCCATCGACGGGGAAGGGGAGTCGGCT 1813764 29 100.0 32 ............................. TCGCGTTTGGTGACGTATGCGCTGATGTATTC 1813825 29 96.6 32 .......................T..... AGCACCGCCGCCGACCCGTCCGCGTGCGGCAC 1813886 29 96.6 0 .................T........... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.0 32 GTCCTCCCCGCGCAGGCGGGGGTGAGCCG # Left flank : GACTCCACGGCCGGCGCGGCCTCAAGGCGGGCCAGCCAGGCGCGCACGACGTCATGCAGCGGGGTGAGACTGTAGGAGTGCCGGGAGTCCTCCAGTGCCCGCGACCAGTCCTGCTCGAACGCCGGCACCCAACTCTCAGCCCGGGCACTGACACGGAGCTGAGCGAGCAGCTGCGCGGCCGCGGTCGGCGCGATCGGCGCCGGCGGGACAGCCGCGTGATCGGGCTGGGCACTCATCGCCACCTCCAGGCAGGTCCTGACGCCAACGGTACGCGCGCCCCGCGCCGCCATCCAGACGATCCGTCAAAAACTGCTGGTCACCACCAGCGTCGGGCTGGCCCCGCCCTTCATCGGCTGCCGCCAGCACTGAGGATTACAGCGAGGACAGCGACCAGGGCAGCCACGGTTGCAACGCCGGCAGTGACCGGACCGTTCAGCGACGGACGTCGGTGAACCAGGGAGGACTACGGGCCGCCGGTCGGTCCCGCACAGCTGTACCCG # Right flank : GCCCGGAGAGCTCCTCGCTCCGAAGGGCTGACGCGCGGACGCCCAGGCCCGCTACGTTGTCGCCCTCACCGCACACGCCTTGGGGAGCGCAATGAAGGCCATCTGGACACTCCTCACCCTGCTATTCGGCGTACTCACGCTCGGAGCCATTGCCAACGCCATCCAGTCGCTGACGGGCGCTGGAGCATCCGGCGCCCACAACAGCTACAGCATCAGCACCGGCATCATCGACGGCGCCCTGCAGCTCCTCTTTATCGCGCTTCTCGCGCTTGCCACCAGAGCCTGCTATCGGCGAGCCTCACGCGGCAACCAGCCCCGCCCCGGCGCCGACAGGCGACCCTGGGAACGCTGACAACACAGCGCCCGCCCCAAGTTGGCTCGGGCGCTACGCGAGTTCCGGACCATCTCCCCAACGGTCCATGGTCACAACTGTGTCACCGCCCTCACCCCCACTCACACTTTCTTCACACCACCCGTTACGGTCACTCCACCACGAACCA # Questionable array : NO Score: 3.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCAGGCGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [2,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCCCCGCGCAGGCGGGGGTGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.30,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2049465-2048981 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAQG010000001.1 Streptomyces sp. RLA2-12 RLA212_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================= ================== 2049464 28 78.6 33 C..AC......CTG.............. GGAGGGACGCGATGAGCGGGCCTGCCACGCGCC 2049403 28 96.4 33 .......................A.... GTCTTCTGCTACACCGTCGGTTTCGTCCTCCTC 2049342 28 100.0 34 ............................ AGGCGGCAGCAAAGCCGCGCGAGTTGAAGCTTCG 2049280 28 96.4 33 ........T................... GCCGGACCTGATCCTTCACGTCCTGCGCGATGC 2049219 28 100.0 33 ............................ GCCGCTTCCCAGCATTCGACTCAGCCCGATTCC 2049158 28 100.0 33 ............................ GGCCATCACGTCGATGTCGGCGACGGCGGCGTT 2049097 28 96.4 61 .................T.......... GCCCGGAGAGCTCCTCGCTCCGAAGGGCTGACGCGCGGACGCCCAGGCCCGCTACGTTGTC 2049008 27 71.4 0 .C....A....A..C..TT...-....G | C [2048991] ========== ====== ====== ====== ============================ ============================================================= ================== 8 28 92.4 37 GTCCTCCCCGCGCAGGCGGGGGTGAGCC # Left flank : GGAGTCCGGGGATCTCCTCGCCCGGGCCGTAGAAGTGCCGGAACCGCTGCCAGGGGACCTCGTCGTACCTGAACCCGTCCTTGACCTCCCGCGAGATCGCGCCCACGGCCGTCCGTACGTCGCAGTCCGTGCCGACCCACCGTTCCGGCCAGCCAGCCCAACGGTCATCGTCCATGGCTTGGCCTTCCAGTTCACCGACAGCATCCGAACCCCGGGAGTTTAACGACCGGTGATCAAGAGGCGGACCGCTTCTGCCGCACTCCGGTGGCACCGCACCACAGCGACGTCATTTCTCGTTCTCGTGAGCATCTGCAGCACTCAAGATCGCCATCTGCTGTCCAAACGCTGCTACTTCACGTGAACGAAGCCACCGGCCGGCTCACCCCCGCCTGCGCAGGGAGGACCGAAGAACGAAACGGCAAGAATTCCGGGACGACGGCTCACCCCCGCCTGCGCGGGGAGGACAGGGTCTTGGGAGGATCACTCTTTGTACCCGGCGG # Right flank : CAATGAAGGCCATCTGGACACTCCTCACCCTGCTATTCGGCGTACTCACGCTCGGAGCCATTGCCAACGCCATCCAGTCGCTGACGGGCGCTGGAGCATCCGGCGCCCACAACAGCTACAGCATCAGCACCGGCATCATCGACGGCGCCCTGCAGCTCATCTTTATCGCGCTTCTCGCGCTTGCCACCAGAGCCTGCTATCGGCGAGCCTCACGCGGCAACCAGCCCCGCCCCGGCGCCGACAGGCGACCCTGGGAACGCTGACAACACAGCGCCCGCCCCAAGTTGGCTCGGGCGCTACGCGAGTTCCGGACCATCTCCCCAACGGTCCATGGTCACAACTGTGTCACCGCCCTCACCCCCCACTCACACTTTCTTCACACCACCCGTTACGGTCACTCCACCACGAACCATCCCTGGGGGGACCATGTCGTACAACCAGCCGCCGCCACCGCCCGGATACGGGCCGCCGGCCGCCCCTGCACAGCAGCCGCCCAGGCC # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCAGGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCGCCCCGCGCAAGCGGGGGTGAGCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //