Array 1 107832-108348 **** Predicted by CRISPRDetect 2.4 *** >NZ_VABM01000010.1 Klebsiella pneumoniae strain CRE239 239K2014_contig000010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 107832 28 100.0 33 ............................ TGCCTCCAATGCAATCACCGGCCTGCTAACCGG 107893 28 100.0 33 ............................ CGTCATCAGCGCCTTGTTCCAGCGGCGACCACC 107954 28 100.0 33 ............................ TCCAATCGTCGTAGTCCTCGGTAATGTCCTCGA 108015 28 100.0 33 ............................ TATCGTGCAGAGTCACAACCTGACGGGATTATC 108076 28 100.0 33 ............................ TCGTGCATGGTGAGGATTCTACAGTCGCACCAT 108137 28 100.0 33 ............................ TACCTCCCGGCGTCCGCGCCAGGGCGATCACGT 108198 28 100.0 33 ............................ CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG C [108203] 108260 28 92.9 33 ............T.T............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 108321 28 89.3 0 ............T......A.......T | ========== ====== ====== ====== ============================ ================================= ================== 9 28 98.0 33 GTCTTCCCCACACGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : TCGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGATATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 117102-118234 **** Predicted by CRISPRDetect 2.4 *** >NZ_VABM01000010.1 Klebsiella pneumoniae strain CRE239 239K2014_contig000010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================= ================== 117102 28 100.0 33 ............................ TTCGCATGGCCCGATCTCGGCGCCGCCGGTGGC 117163 28 100.0 33 ............................ TGTTCAGACCGTCGAGGCTGTTCGCGTCGGAGC 117224 28 100.0 33 ............................ CGGCTCCTGTACGTTAAACCCTTCGCGCTGTGC 117285 28 100.0 33 ............................ CATCATCGGGCTTGAGTGGCAGCAGGTCGATAT 117346 28 100.0 33 ............................ CAGCAACCGTGAGCAGAAGTACAACATGCTGGC 117407 28 100.0 33 ............................ TAATGCGCCTGATCTGGCTGCTGTTCATCGCCT 117468 28 100.0 33 ............................ CCAGCGCCGGGTTTGCCGTTGTTGATATATCCC 117529 28 100.0 33 ............................ TACACCCGCCGTGGGAACGACCTGGACACCTAT 117590 28 100.0 33 ............................ CACCAGGCAGGGCGGCGCGGATAGCGTCAGGGG 117651 28 100.0 33 ............................ CCGTTGGCGGGACAGTTTTTTCACTGACAGGTA 117712 28 100.0 33 ............................ TGGCACTGTCACTGTCGAGACGATATCGACTGC 117773 28 100.0 33 ............................ TAGATACGGCTGCATTTGGCGTGAAGGGGTGCA 117834 28 96.4 33 .....................A...... TACACTGAGCATGTACGCCGTGGATGCAGTAGC 117895 28 100.0 33 ............................ TGTCGTCACATAGTGCTCTATCCACTGGTTAGC 117956 28 100.0 33 ............................ TAGTTCGCGAGGAGACGCCCCAAGGTTCACCGC 118017 28 100.0 33 ............................ CCTCATCTAGTAAAAGCGGTTTTGTTATGAATG 118078 28 100.0 33 ............................ TCCGCCGTTTAATCGCGGTGATGATATCCGGCA 118139 28 100.0 41 ............................ TGGAATCCACGACGCGCCGTACCAGCGCTGGCATTCGTTCT 118208 27 85.7 0 ......A...T.T....-.......... | ========== ====== ====== ====== ============================ ========================================= ================== 19 28 99.1 34 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTGCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : CTTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGTAGAGGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATAAATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //