Array 1 18781-17753 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVFJ01000039.1 Absiella sp. AM09-45 AM09-45.Scaf39, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 18780 33 100.0 34 ................................. AAGATTAAGTATATGGGTATGCACCAGGAGAGAG 18713 33 100.0 33 ................................. TCATCTGTAAGATATCTTATAAAGCTGTCTTGC 18647 33 97.0 34 ................................C CAATTTGATGTGCTATTGCGCAACTTTAAAGAAC 18580 33 97.0 34 ................................T CAAAAATCAATAGATCTCCATCGTTTATATTTGC 18513 33 100.0 32 ................................. CATCAAATTTTAGATTTATGGAACTTTTAGCA 18448 33 97.0 33 ................................T TAGATGTAAATGATGTACATAATTTGTTGATTG 18382 33 97.0 33 ................................G CGGAGCAACTTAACAAAATGTTTGTTGTTTCCG 18316 33 100.0 32 ................................. GCCTGTTCATTTCGCACCTCTTTTCTGTCGCC 18251 33 97.0 33 ................................T CGCATAAGCGCTTATCAAAACTACCCGCCTACC 18185 33 97.0 34 ................................T AAATGCGTCCATATAATCGTTAAATTTTTTCTTT 18118 33 100.0 34 ................................. TCGATCCCACACGCATCATAAGCAGTTTCTATAG 18051 33 97.0 36 ................................C CCTCACTTTCGTTTTCAAATTGATCAAAAACACCGT 17982 33 97.0 33 ................................G TAGCTATCTGATTTTGATGCTACGAGATCTGTT 17916 33 100.0 33 ................................. TTGAAGATCTACGTGATACGATGGTTGATATGA 17850 33 90.9 34 ..........G.........A...........G ATGCAGATGTCAAAGTAACGATCCATGCAAACAG 17783 31 81.8 0 ..................A.A.--.....G.C. | ========== ====== ====== ====== ================================= ==================================== ================== 16 33 96.8 34 GTCTAGCTCTATATGAGCTAGTGGATTTAAATA # Left flank : ATACGCGGTGATTTGGATGAGTATCCCCCTTTTTTAGCAAGGTGATTTTATATGCTGGTATTGATAACATACGATGTTAATACAGAAACGAAAGCTGGGAAAACCAGATTAAGAAAAGTAGCAAAAGAATGTATGAATTATGGGCATAGAGTGCAAAATTCTGTTTTTGAATGTTATATGGATAATGCAAAAGCACTTGAAGTTAAACATATTCTGGAAAAGATTATTGATAAGGATCATGATAGTTTAAGATTTTATTATTTAGGGAATCGATATGAAAATAAGGTTGAACCTCTTGGTGTAAAACCTAGTTTTAAATTAGATGATGTATTGATCTTATAGTAACGCGAATATGATGCTCCCATGAAATCGCTGGGAGGTTCGCGCAAAAATGTGTTATATTTTGAATAATATGTAACATATTGAAAATAGTAATGTTAATTTAAAAAAATATTGTTTGAAAATTCGTTACATTAGTTTGAATTCGATACATTTTTGTT # Right flank : TCTAACAACGCCCGCTTATTTTGGCGATATGCTCGACTTTTTTCAGAACACCAATTTAAACACTGTACAAACTAATGAATTTATATCACATTTTTATAAACAATTTTATAAACGGCAGATAATACAAAATACTATGTCTAATGTCTTTATAATTGTGTATAATATATTCGTTTGATTATGAGGTGAAAATAAATATGTACAAACAATATAGAGAAGGCTGGCTAGAAGTAATATCTGGATGCATGTTCGCAGGAAAAACTGAAGAATTAATTCGTCGTATTAAAGTATTAGAGTATGCAAAAAAGAAAATAGCTGTCTTTAAACCAAAAATAGATAATCGATACAGTGAAGAAAATATTGTATCGCATGCAGGAAGTAGTGTGAAAAGCTTTTCGATTGAAAATGCACATGAAATATTCAATTATATTGATGATTCATATGACGTTATCGCGATAGATGAAGTACAATTTTTTGATGAAGAGATTGTTGAAATTTGTGAC # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTATATGAGCTAGTGGATTTAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.62%AT] # Reference repeat match prediction: R [matched GTCTAGCTCTGTATAGAGCTAGTGGATTTAAATA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 160-1180 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVFJ01000041.1 Absiella sp. AM09-45 AM09-45.Scaf41, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 160 32 75.0 35 .AAC...A.T.T......C.A........... ATGGACATCCAACAATAAAACCACAAGCCATTATA 227 32 96.9 35 .......................T........ GAACAAATAATATCACTTTCATATAGTTTTCCATT 294 32 96.9 34 .......................T........ TGATTTACAGCCATTCTTTGATAAAGCAATAGAA 360 32 100.0 34 ................................ TGTTTTTTTTGATGTTCAGCATTTCCATTTTTTC 426 32 100.0 33 ................................ GGTGTAAGAACTGTATTAAAAGATCTAGGACGA 491 32 100.0 35 ................................ CAACTAGAGTTGTAGATTTTGATAAAGCAACAAAA 558 32 100.0 35 ................................ TTTTATTACTGATCACACGTAAAGGTGGAAAAACA 625 32 100.0 34 ................................ TAAAACTGGATGTCCTTTTGGATATAAGAAAAAT 691 32 100.0 34 ................................ AAAGAAGTACGAAAATCTGTTATGAAATTAAATT 757 32 100.0 33 ................................ AAACTAGCAGATGTCTTTGGTGTAACTACTGAT 822 32 100.0 34 ................................ ATTTTTGCTGTATAATATAAGTGAAGTGAGGTGA 888 32 100.0 34 ................................ AGGTCAAGGGATTTATGAGAGGAAAAGGCAATAT 954 32 100.0 33 ................................ ATTGTCTAACATCTTACCAACGTCTGCTCCGTT 1019 32 100.0 33 ................................ TTTCAATACTAAAATTTCGGGTATTTCCATCAA 1084 32 100.0 33 ................................ GGAGATAGTAAGGAAGTTGCACAGGCATTAGAA 1149 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 16 32 98.0 34 ATTGAAATCCACAAGTTCATGAGAAACTTGAC # Left flank : TAATGTTTAATTATTTTTAAGACATTTTCATTTTTGCTTGACATGAATTACATATTTAAAATCTGGAAGTTTATACAATATATAAAAATAAAGTCCAGCCACTAAAAAAAGCTAAACTTTATTTTAATTATTATATGCACAAAGCTATCTACAAAAAATA # Right flank : CCGCAAAAATATTATTTACTTGCTAACTTGTAACAAATTTCCATCAAATGAAATCTCTCTTTCTTTCAATCTGTTACATATCACTGATTAAGACACACAATTTAGCGCGAATCTCCTAGAGAAAACATGGGAGCTTAATATTCGCAAATCTTAAAATCTTGTTTTCCTATGATAATTATCATCGAACATGATAAATATCTGAAATAACTCTTCTGCTGAAAATTCAATTTTCCCTTGATATTTTTCAACAATCTGTTCAATATTTCGGAAACCAAAACCGTGCATATGATGATCCTTTTTATTACTAATTAAACGATCATCCTTTATAATCACTTCATCTTTATCATAAGAATTTGATAAATCAATATAAATAAAATCATCTTTATGTCCAATACTTAAACGGATTAATTTACGCTCACATTTACAAACCGCCTCTAAACTATTATCCAACAAATTTCCAAGCAAAATACATAAATCCATATCATCTAAAATTGCCAGCG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAAATCCACAAGTTCATGAGAAACTTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : NA // Array 1 28094-27035 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVFJ01000014.1 Absiella sp. AM09-45 AM09-45.Scaf14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ==================================== ================== 28093 34 100.0 34 .................................. TGGTCATTAAAATTTTCTGTGCCTGATTGTCCAG 28025 34 100.0 35 .................................. ATTTCGTGAGCTGTATACTCGTAAGAAACCATAGC 27956 34 100.0 35 .................................. GAAAACCTCTGCTGACGGAGGAGATGGTGTCCCCG 27887 34 100.0 34 .................................. TGATAGTAGGTGGAAATTATGGTAGCACGGTAGA 27819 34 100.0 35 .................................. ATTTTGACCAATAATGCTAAAACGCCACCAAGTAA 27750 34 100.0 33 .................................. ACACTATGACGGAGACGGCCATAAAAGCCGCCT 27683 34 100.0 35 .................................. AAGAAAGTAAAAATGTCGCTCCCATCCGACCAAGG 27614 34 100.0 36 .................................. TTTTTTAGGTACGATACACACTTGTATATAGTCATG 27544 34 100.0 33 .................................. TTCGAATACGTTTCCCCATTGATTACTATTTAA 27477 34 100.0 34 .................................. AAGTATGGCAAAGAGGTGTTTCAATTGCTGTTAA 27409 34 100.0 35 .................................. TATGATAGACCAACCAAATAATCCAAACTGCCAGC 27340 34 100.0 34 .................................. GATAAGATTAAGATTTTTTTTATACATCTTAAAG 27272 34 97.1 35 ...................A.............. TTTACTTCTAATTGCTTTTGGTTTACAGTTACTTT 27203 34 97.1 33 ...................A.............. TGTTATTCCTGATTTTTTAATAAGATAAAAAGA 27136 34 97.1 34 ...................A.............. CTATTTTAAAAATACCATCTATATATATTGTTTC 27068 34 82.4 0 .................G.A.....A..C...CG | ========== ====== ====== ====== ================================== ==================================== ================== 16 34 98.4 34 GTCATTATGCTATATGCATGATGTGGATTTAAAC # Left flank : AATATAAATATAGTATAGGAACTTATTTTTCATTGCTGGCATATGCAGATGAACCAATTCAGCATGCGTGGTTTCTATCACCAATTGTGAATATGCAGGTTATTGTAGAAAATATGATGGAATAGTTTCATATAGATGAAACACAATTAGAAAACAAGAGATAAACCAATTTAGATATGGTCTATTCGGATATCCTTTATGGAGAAAAGAATGATATGTGTGATTGGTTGTTCACAAATTTCATTGTGATTTACAAGTCATGAAGAATGGAGAGCATTATTTCCAAACATCTCAACAGCTTGCATATCATACTAAATGCTTAAACAATCATCTTATTTAAACGCTTGCGAACCTTAAGCTCACATGATATTCCTAGGACATTCGCGCATGGAGATATCTTATTTTGCACTATATGTATCGAAATGAAAAAAAGATTTAAAATCATGCGTTGAAAAGCAAAAAAAATTGTTTCATTAGCGTATGATTCTAACAATTTTGCG # Right flank : ATTAGCACCGGTGCTAATGAACCATTTGCAACTGTTGTTATACTTTATACGGCAATGATTGAAGCATTGTATCGTTGTAAATGTCTTGAATTTAAACTAAAAAAGATATCACATCCGATTTGGATATGATATCTTCAAAATGTTTAAGCTTTACTATCTGCCAGAACGGTTTTAGTTTCTGGCTTTTCTTCTTCATTGAATAACTTTTTACCTGAACAGAAGGTAATCATTAAGCCTAATGCCACAAGTAGAACAGCGAAGATTAATTGTAAACCATCTGTCATAAATACGAAACCACCATTAACAAATAATTTCAAACAGATATTGTAGATAGATAAACCAAGTGATGTCATAGTACAAATTAACATCAGGGTCATAGGTACATATAACATCCATCCTTTTCTTCCAGTGACTTTTAAGAATACAGATAATGATACAAGAACCATAGCGCCTAATAACTGGTTAGCACTACCGAATAATGGCCAGATATTATTATATCC # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCATTATGCTATATGCATGATGTGGATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 88316-87815 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVFJ01000014.1 Absiella sp. AM09-45 AM09-45.Scaf14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 88315 33 100.0 32 ................................. ATTTGATCGATGAAATATCCACTAGTATTTAA 88250 33 97.0 34 ................................C ATCCTCATTGTACTTGTCATACTCATCATTAATC 88183 33 97.0 34 ................................A GTCATGGATAAAAGTCCTCAATGACGATCCTCAA 88116 33 100.0 35 ................................. CAAGAACTTGCTGATCAATTAGTCAAAGATGGTTG 88048 33 97.0 34 ................................A CTTTATGTTCTCCGATTGCATCATTGTTATAGCC 87981 33 97.0 34 ................................A CTGTAACCGGCACGAATGGCTGCCTGTGTGATGT 87914 33 100.0 34 ................................. TCCTTTCTGTGCAAATCACATTTATACCTCTACC 87847 33 84.8 0 ..........T........C..AT........G | ========== ====== ====== ====== ================================= =================================== ================== 8 33 96.6 34 GTCTAGCTCTATATGAGCTAGTGGATTTAAATT # Left flank : GATACGTGGTGATTTGGATGAGTATCCTTCCTTCTTAGCGAGGTGATTTTATATGCCGGTATTGATAACATACGATGTTAATACAGAAACGAAAGCTGGGAAAACGAGACTAAGAAAGTAGCAAAAGAATTTATGAATTATTAGCATAGATTGCGAAATTCTGTTTTTAAATGTTTTATGGGTAACGTAAAAGCACTTGAAGTTAAACATATTCTGGAAAAGATTATTGATAAGGATTATGACAGTTTAAGATTTTATTATTTAGGTAATCAATATGAAAATAAGGTTGAACATATTGGTGTAAAACCTAGTTTTAAATTAGATGATGTATTGATCTTATAGTAACGCGAATATGAAGCTCCCATGAAATCGCTGGGAGGTTCGCGCAAAAATGTGTTATATTTTGGATGATATGTAACATATTGAAAATAGCGATGTTAATTTTAAAAAATATTGTTTGAAAATTCGTTACATTGGTTTGAATTTAATACATTCTTGCT # Right flank : TACATTATGTGCTGCCTTTTAAAATTCTGTGCGTTTAGATTGATAAGAGTATTACAGTCTTTATCTAATATTTCTGTGAAAAGCAACTCCACTTGACATACTTATGATCTCATCTTCAGAAGAGGCTTTGTAATATATCATTTCTTTGAACGCTTATTGAAAAAAGTACTACTCTATTATAAATTATAAAATTGAGGCATCCTTGTGTATTATAGTTATATCACGCTTGCGTAATATGTTAGGTTTTAAAGCACATGATACTTCATACCAGCTGTAATCCATTCTTTTAAGATAATTAGATTGCTACTAAATTCAATATAAGTGTAAGCATATACCTTTGCATATTCTTTACAATTCATAAAATAACCATATCGCTCGTGAATATATAATAAAGGATTTCTAAGAAGTACTACTCACGCCGACAATAGTTGTCTTAAGCTGTATGGTCACTGTTCCAAGGGAAGGGATCGCCAATATTGTATAAATTAATGTATTACCTA # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTATATGAGCTAGTGGATTTAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.62%AT] # Reference repeat match prediction: R [matched GTCTAGCTCTGTATAGAGCTAGTGGATTTAAATA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //