Array 1 12811-11317 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBPT01000016.1 Salmonella enterica subsp. enterica serovar Cerro strain NY_FSL S10-545 NODE_16_length_63839_cov_32.3119_ID_3497, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12810 29 100.0 32 ............................. CACCGGAACTGCCTCGCCCCCCTTCAGAATTA 12749 29 100.0 32 ............................. CTTCCCTGCGAACTCTTCTGCCATCCTGAACC 12688 29 100.0 32 ............................. CCGCGTAAATTTTCAGCAGTTGATCAACCCGG 12627 29 100.0 32 ............................. CGCACTCAGGCCGGAAAAGTTATTTACGAAAT 12566 29 100.0 32 ............................. ACGCGCCGCCGCCTGGCGGCTTTAACTCAGGT 12505 29 100.0 32 ............................. CAGCCTCGTCCGACACGGATCAGGGTGAGGTA 12444 29 100.0 32 ............................. CCGTGATTCGACCTCTAAATGGGTTCTCATTC 12383 29 100.0 32 ............................. AGCTTTGGGGAGGGGTTGTTTCGTTTGGTGAG 12322 29 100.0 32 ............................. TCGGTCGATCTGCATATCGATACCCGCGGTTA 12261 29 100.0 32 ............................. CACAGAAGACGATAACGGGAGATTTCCCTAAG 12200 29 100.0 32 ............................. GTGAATGCGCAGAATATAGATGGGGACATTAC 12139 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 12078 29 100.0 32 ............................. TGATGCTGGAACATTGGGAGATGATCAACACG 12017 29 100.0 32 ............................. TTTATTTTTTATTCGATATTGTTTTTGAATAT 11956 29 100.0 32 ............................. GATTGGAAAACCAATCTCTTTGTTACCACATC 11895 29 100.0 32 ............................. ATCACGCACCCGAAACCTACACCGGCTTATTC 11834 29 100.0 32 ............................. CATCCCCTGACGCTGTAGAGCCATTTCCTGTT 11773 29 100.0 32 ............................. CGACATTTCAGCGGCTATCATCGAACAGTGTG 11712 29 100.0 32 ............................. AAATGTTTAATAAATACAGCAAATGCATATCT 11651 29 100.0 32 ............................. AACTGGCATCCCTCATGGTTGAGGGATTCAGT 11590 29 100.0 32 ............................. TTCGCGCTCAACTTATGGCGGTATTAAACACC 11529 29 100.0 32 ............................. CGCTTTATCGTAACTGTTTACCCGATAGTTCT 11468 29 100.0 32 ............................. GCTATCCAGCCGAGAAATGGCAGAACCGGTAT 11407 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 11346 29 93.1 0 A...........T................ | A [11319] ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAAAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 30826-29517 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBPT01000016.1 Salmonella enterica subsp. enterica serovar Cerro strain NY_FSL S10-545 NODE_16_length_63839_cov_32.3119_ID_3497, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 30825 29 100.0 32 ............................. TGACCGGCTCAGATATTGATGTTATGTCGTAT 30764 29 100.0 32 ............................. GGATCTTGCTGGATATTGATTCGCCAGGCGGT 30703 29 100.0 32 ............................. GTCAGTCATCTGTTTACAGTACAATGATCGAT 30642 29 100.0 32 ............................. TATGAAATGCGGCTTAAAATTTGCCAAGTGAA 30581 29 100.0 32 ............................. CGTATGCGTTCACCAATGGTCATCTTTTTCAT 30520 29 100.0 32 ............................. GAGTCAGCCCAATGAGCAACATCGACAAATCA 30459 29 100.0 32 ............................. CAAAACGGCCTGGTAAGCTGGAATGACAACGC 30398 29 100.0 32 ............................. GCAACCCCGTTTCGCAGATCGCCGCCCTCGGA 30337 29 100.0 32 ............................. CCATAGAGTTATAGTTACTTTTGTCCGCAAAC 30276 29 100.0 32 ............................. GATGCTGGGTATGGCAGGTATGATTTGTGAAA 30215 29 100.0 32 ............................. TTTGCTTCCCTCGGGGCCGTGTCGCGCCCATT 30154 29 100.0 32 ............................. GGCGGCGAGTTCGGCTGGGTCTTTGATAATGA 30093 29 100.0 32 ............................. TCTGAATGCCTTTTCTTTTACATCTGGATCAT 30032 29 100.0 32 ............................. ACCATAACGAACCATTTCATCCAGCATGCGGC 29971 29 100.0 32 ............................. CCTTGTTAAATACAGGCGGTGGCGGCGGGGCT 29910 29 100.0 32 ............................. ACAACCCGGAAATTAAATTTTATCAGCACAAA 29849 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACGACTCAATG 29788 29 96.6 32 ............................T CGGAAAAATGCGCGCCGCAGGGGATGATGGGC 29727 29 100.0 32 ............................. CGTTGGGTTGTTTACCTGAGTATTTAGCAACT 29666 29 100.0 32 ............................. GTGGTAATGGTGCCCGGTCCGGCCGGGTCGCA 29605 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 29544 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGTTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //