Array 1 120118-118336 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKLT01000066.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN008089 CFSAN008089_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 120117 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 120056 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 119995 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 119934 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 119873 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 119811 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 119750 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 119689 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 119628 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 119567 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 119506 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 119445 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 119384 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 119323 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 119262 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 119201 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 119140 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 119079 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 119017 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 118914 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 118853 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 118792 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 118731 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 118670 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 118609 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 118548 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 118487 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 118426 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 118365 29 96.6 0 A............................ | A [118338] ========== ====== ====== ====== ============================= ========================================================================== ================== 29 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16589-15096 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKLT01000140.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN008089 CFSAN008089_71, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 16588 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 16527 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 16466 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 16405 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 16344 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 16283 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 16222 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 16161 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 16100 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 16039 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 15978 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 15917 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 15856 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 15795 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 15734 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 15673 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 15611 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 15550 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 15489 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 15428 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 15367 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 15306 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 15245 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 15184 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 15123 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //