Array 1 50222-49826 **** Predicted by CRISPRDetect 2.4 *** >NZ_APZX01000379.1 Escherichia coli P0304799.3 gecP03047993.contig.379, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 50221 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 50160 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 50099 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 50038 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 49977 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 49915 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 49854 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 7 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1315-249 **** Predicted by CRISPRDetect 2.4 *** >NZ_APZX01000383.1 Escherichia coli P0304799.3 gecP03047993.contig.383, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1314 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 1253 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 1192 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 1131 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 1070 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 1009 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 948 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 887 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 826 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 765 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 704 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 643 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 582 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 521 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 460 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 399 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 338 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 277 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAG # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 45675-43572 **** Predicted by CRISPRDetect 2.4 *** >NZ_APZX01000443.1 Escherichia coli P0304799.3 gecP03047993.contig.443, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 45674 29 100.0 32 ............................. GGTGGTTTTGAGTTTCATAATCTATGAATAAG 45613 29 100.0 32 ............................. TCAAAACCCCTTGCTGCCATAGTAGCTTAACG 45552 29 96.6 32 ............................T CAGCCTGCCTGTACTCTCGCAATTGCTTACGC 45491 29 100.0 32 ............................. GGTATGGTTCTTTGCGCAAGTATGCAGCCATG 45430 29 100.0 32 ............................. GGTCTTCGAGGTCACAAAGACGTAATAACTGA 45369 29 100.0 32 ............................. CCCTCTGGCAATTCTGGCAAGAACGTCTGGAG 45308 29 100.0 32 ............................. TTTATTCGCAGGTTCTCGGAAGAATTCGGGGT 45247 29 100.0 32 ............................. CTCTGCCCTTTGAGGTGGTGCACTGACTATCA 45186 29 100.0 32 ............................. CATATGCTTAAGACTATCCAGAACGTACCTAA 45125 29 100.0 32 ............................. TTAACTGCGCTCAAGATGTCTTCCTGAATGAA 45064 29 100.0 32 ............................. GCAAAGCTCGTAAACTTCTTCATAAGGTTTAC 45003 29 100.0 32 ............................. GCTAATGTTCGTGGTATCTCAACGCCAAAAAA 44942 29 100.0 32 ............................. TCACCGTTAGGCCCTGTTAAGTATTCATGTAG 44881 29 100.0 32 ............................. CCGCTTTGCCGTCTGCATCTCGTCTTGATGAA 44820 29 100.0 32 ............................. CAGCCTTAAACGCTCGCTTAGCGCCTTCATAG 44759 29 100.0 32 ............................. AAAAAGAAACCTTCACCGACACGAAAGGGCGT 44698 29 100.0 32 ............................. GCTGATACCCATTTCATTTAAACGGTTATTAA 44637 29 100.0 32 ............................. CAAAGAAATGTAAACTAATTTGAAGAAATTAA 44576 29 100.0 32 ............................. GACTGCGAGGGGTATTAAAGTCCGACGTGATT 44515 29 100.0 32 ............................. AATTAATGCCAAAATATTTAGACTTATATGCG 44454 29 100.0 32 ............................. GAAATTTACGAAAAATCAGAAGGCGCGCTTTC 44393 29 100.0 32 ............................. TCAGTTAGCTCACGAATTAACGGGATGCCGTA 44332 29 100.0 32 ............................. CAAAAATATGTTTTGCGTTTGATAACGCGTTG 44271 29 100.0 32 ............................. AATGGTTTAATCGCGGAATGATTTCGGCTCGA 44210 29 100.0 32 ............................. GATATATTGTTGTTTCTGAAATGCACGCTGAA 44149 29 96.6 32 ........T.................... CTGCGGCTATATCTTACAGGTTACCTTCTGAT 44088 29 100.0 32 ............................. CCGGAACATACCGCTGTCTGCCGGAGCCGGAA 44027 29 100.0 32 ............................. GACATCGCCTACCCGAGTTTTCGGCTATGAGC 43966 29 100.0 32 ............................. CCGCCAGGCAGCCGGGAGCCGAAGGTGCGCCC 43905 29 100.0 32 ............................. GCTCACTCTGATGCAGTTTATGTAATTCACGA 43844 29 100.0 32 ............................. GCTCACTCTGATGCAGTTTATGTAATTCACGA 43783 29 100.0 32 ............................. GCTCACTCTGATGCAGTTTATGTAATTCACGA 43722 29 100.0 32 ............................. GCTCACTCTGATGCAGTTTATGTAATTCACGA 43661 29 100.0 32 ............................. GCTCACTCTGATGCAGTTTATGTAATTCACGA 43600 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.8 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTTACCGGGGGCACGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGAAATAAAGTTGTTTGAAAACAAACGGATATGCTTAGT # Right flank : GCTCACTCTGATGCAGTTTATGTAATTCACGAGTGTTCCCCGCGTGCGTATTTTCATGGAAGGAGATCAGTGAAGGTAATTTAAAAATGCCGTTACTCACCGATCTCCTTCACGATAATACGCAGTCAGTTTGCAAATAATCCCCCCATCTTTTGCAATAGACGTGTTTTCTCTGGTGGGGTGATTACCCAGTCTTTTTTACTGTGTCTGACCTTTTGTACTGTAGTGCAGTTGTAATGCAAACCTCCCGGGCTTTTGGGAGACAGCATTTCAGTCCTGGTTCCATCATTACCATTTTGTTGATTCGAAACGAAAACCTTCATCAAAATCGATCGATTTTACCGATCGATATGATCGCATCGATCGGTTGTAACCATTTTACCCTATCTTTTGCATGGTTTTAAAATAGGCAACCCTATTTGTCGGGTAGGGTAAGAACCAACGGAGATGATTGAAATGAAAAAGGTTATTGCGGTTTCAGCGCTTGCAATGGCTGGCAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //