Array 1 43794-45591 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOFY01000009.1 Escherichia coli strain MOD1-EC5156 MOD1-EC5156_9_length_160498_cov_58.8016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43794 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 43855 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 43916 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 43977 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 44038 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 44099 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 44160 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 44221 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 44282 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 44343 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 44404 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 44465 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 44526 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 44587 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 44648 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 44709 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 44770 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 44831 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 44892 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 44953 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 45014 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 45075 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 45136 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 45197 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 45258 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 45319 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 45380 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 45441 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 45502 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 45563 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 61093-61914 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOFY01000009.1 Escherichia coli strain MOD1-EC5156 MOD1-EC5156_9_length_160498_cov_58.8016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 61093 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 61154 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 61215 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 61276 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 61337 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 61398 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 61459 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 61520 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 61581 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 61642 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 61703 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 61764 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 61825 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 61886 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //