Array 1 71692-73122 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNTE010000006.1 Lactobacillus delbrueckii subsp. lactis strain NCIMB 702469 NCIMB702469-i1-1_scf6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 71692 28 100.0 33 ............................ TGCTTGGTGCTGTAAGGTGTTTAAAGTTTTTTC 71753 28 100.0 33 ............................ CTGCGTTCTTAAGGGGGTAACCCACCGGGCAAA 71814 28 100.0 33 ............................ TAATAGTTGTAAGGAGGAAATACAAAATGAATA 71875 28 100.0 33 ............................ TGACTCAGAGTGGTGGTTTATCCTGGCGGACAA 71936 28 100.0 33 ............................ TGTATCTTCAATATATGAGCATACATTCCCGGG 71997 28 100.0 33 ............................ TTGTCTTTGAGTTTCTCAATCAATTTAAAGACT 72058 28 100.0 33 ............................ TGCTTACAAGGCTTTATATTAGCTTACTTTTAA 72119 28 100.0 33 ............................ CTGCATATAAAGTGCCAGCGACATGGTCGGCCG 72180 28 100.0 33 ............................ TAATCGATTTCCACCAATGTTGATTCCGTTTCC 72241 28 100.0 33 ............................ TTCTTCATTGCTTGTAAAGGGTCTCCATTGCTA 72302 28 100.0 33 ............................ TCGGCTGGAACGACCTTGATAGTCACATCGTCA 72363 28 100.0 33 ............................ TCCAGTTTGTGTTGTCAAATACAGAAAAATAAA 72424 28 100.0 33 ............................ ATCAGCAAAGGCGATTGGATCACCGAACCACAA 72485 28 100.0 33 ............................ CCAACACACAGCTCTTCCTGGACGAACTGTGGA 72546 28 100.0 33 ............................ TACCCTGATTACTTGCGGCTTCTTTATGATACG 72607 28 100.0 33 ............................ TGGCCGCTCTTGGGCTTGCTGTAGTGTGCTGGG 72668 28 100.0 33 ............................ TTGGCCTGGAACCCAGCCATTACCACCTCTAGT 72729 28 100.0 33 ............................ TGCTTTTAAACGCCTTACAAGCAAAACGCTAAG 72790 28 100.0 33 ............................ TGCTTTTGATACTATCAAGACATCATTATCCAA 72851 28 100.0 33 ............................ CTCGCCATTCGTACCTCCTAATTTCTAAATTTG 72912 28 100.0 33 ............................ TTCCTGGGCTAAAAACCGCGTTGTCCGTGTCAT 72973 28 100.0 33 ............................ CGAGCATGAGGCAATCTACAAGCGCCGGAAAGC 73034 28 100.0 33 ............................ TAGGCTGCGCCTTTCAGAGCTGCACAAGACCAA 73095 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 24 28 100.0 33 GTATTCCCCACGCAAGTGGGGGTGATCC # Left flank : GGACTGAATACGGAAAGTGATCAGATTTTGTCTATTGGCGCGGTGAAACACGATGGTACAGAATTCTACCGACTGATCAAGCAAGATATTGATGTGCCAAAACAGATAGTGGAGCTGACCGGGATAACTCCAGCAATGCTGGATAAGGAAGGCGTTCCACTGCAAGAGGTTTTGGGAGAACTAACTGACTTTGTTGGGGATGTGCCAATCGTTGGGTATAATTTTAGATTCGATTCTGTATTTTTGAATAGGGAATATCGGAAATGCGGGATGCAAGAATTAAAAAATGAGATCAAGGATTTGCTGCCAGTTGTAAAAAGAAAAGAAAAATTTCTGGACAACTATAAGCTACAGACTGTATTATCAAACTACGGGATCGAAAACAAGGTGCCGCATAATGCTGTGTCTGACGCAAGGGCTACGAAGGAGCTGGCGATGAAACTAATCAAAAATCGCATTTTGGTGATTTGAGAATGGCGTCGCTAAAGGGATCCATTACT # Right flank : TGTTCCCCGTTGTCATCAAAAAATAAAATGCGCCAATTGCAAGAATAAATTGAACACTTACCATAACATCTGGCAGATTTTGACTATCTACGCCGGTAAATGCGGTCAAGTTCGGTGTCAAAGTACTCTTCTGGAGTCTTGTAGTTTAAGATCTTCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCAAGTGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCAAGTGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.30,-10.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 142-292 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNTE010000015.1 Lactobacillus delbrueckii subsp. lactis strain NCIMB 702469 NCIMB702469-i1-1_scf15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 142 28 100.0 33 ............................ TAAATGAGGGGAAAATGAGAAATTTTAATCGAA 203 28 100.0 34 ............................ CTCACAAAAAAAGTAAACACCTTTTAGGAAACTT 265 28 82.1 0 .......................NNNNN | ========== ====== ====== ====== ============================ ================================== ================== 3 28 94.0 34 GTATTCCCCACGCAAGTGGGGGTGATCC # Left flank : TAGAAATGTTTGTGGTAATTCATATTCTACCAGATGGTTGAAATGGATTTTTTGTGCTCTAATCCAGTGAAAACGATTTTTCTTACTGGATCGGAACAGTGTTCAATTTGATTTTACAATCGACGAAAAAATAAAATGAAAG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATCCCCCCCTTTTTTAAAATTTTTCGATCTTGCTGTAGTATTCCCCACGCAAGTGGGGGTGATCCTGTAGTCATCCAGCCAATCAAGGTTAAGAGTTAGTATTCCCCACGCAAGTGGGGGTGATCCCCGTTTGTCGATGTATCTCAAGAATATTTTGGGGTATTCCCCACGCAAGTGGGGGTGATCCCCCCCTTTTTTAAAATTTTTCGATCTTGCTGTAGTATTCCCCACGCAAGTGGGGGTGATCCTGTAGTCATCCAGCCAATCAAGGTTAAGAGTTAGTATTCCCCACGCAAGTGGGGGTGATCCTGTCTATATAGTGTTTAAAAGCGTTCTAAGACGGTATTCCCCACGCAAGTGGGGGTGATCCCAATCCCAGCATCTGAATCCAAGCCGTTTACGC # Questionable array : NO Score: 5.37 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCAAGTGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCAAGTGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.30,-10.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 426-1001 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNTE010000015.1 Lactobacillus delbrueckii subsp. lactis strain NCIMB 702469 NCIMB702469-i1-1_scf15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 426 28 100.0 33 ............................ TGTAGTCATCCAGCCAATCAAGGTTAAGAGTTA 487 28 100.0 33 ............................ CCGTTTGTCGATGTATCTCAAGAATATTTTGGG 548 28 100.0 33 ............................ CCCCCTTTTTTAAAATTTTTCGATCTTGCTGTA 609 28 100.0 33 ............................ TGTAGTCATCCAGCCAATCAAGGTTAAGAGTTA 670 28 100.0 33 ............................ TGTCTATATAGTGTTTAAAAGCGTTCTAAGACG 731 28 100.0 33 ............................ CAATCCCAGCATCTGAATCCAAGCCGTTTACGC 792 28 100.0 33 ............................ CATTTCTAGGTAAATTGCGGGAAAATTTTGAAA 853 28 100.0 33 ............................ TAGCTCGTCTTGAACAGCATTTAGTAAATCGCG 914 28 82.1 31 .......T....T.T.......CA.... GTTCTTTATGCTATTGTGTTTTTCGTACTGT 973 28 75.0 0 ......T....AT.T.C....A.....A | T [979] ========== ====== ====== ====== ============================ ================================= ================== 10 28 95.7 33 GTATTCCCCACGCAAGTGGGGGTGATCC # Left flank : TAGAAATGTTTGTGGTAATTCATATTCTACCAGATGGTTGAAATGGATTTTTTGTGCTCTAATCCAGTGAAAACGATTTTTCTTACTGGATCGGAACAGTGTTCAATTTGATTTTACAATCGACGAAAAAATAAAATGAAAGTATTCCCCACGCAAGTGGGGGTGATCCTAAATGAGGGGAAAATGAGAAATTTTAATCGAAGTATTCCCCACGCAAGTGGGGGTGATCCCTCACAAAAAAAGTAAACACCTTTTAGGAAACTTGTATTCCCCACGCAAGTGGGGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATCCCCCCCTTTTTTAAAATTTTTCGATCTTGCTGTAG # Right flank : ATAAGTTTCAGTTAAAGCACAAGCAAATTTCAAGGATCTTTGGTAGAGTAGAGGTAATAGAGAAGGAGTGAGGAACAAGCGTGAGCATTTACGGTAAGTACGCCGATTATCTTCCACAGATCCTGGATTCTGTTTTGCAGCAAATCCAAGGCATCGGTCAGGAGTATAGTGCAAAACACGGGCAAAAGCTATACGAGTACCTGAAAGGTCGCGTCAAAGGCGAAGAAAGCATGACGAAAAAGTGTGAAAGAAAAGGTTTACCGCTGACGCCAGAGTCTGCATTGATTGAAAACCGGGATGCGATTGGCCTCAGAATTGTCTGCAACTTTATTGACGATATCTACACTTGCATTGACTTGTTGAAGAAGCAGGACAACTTCAAGATCATTAATGAAAAAGACTACATTACCGATGCCAAGCCAAACGGCTACCGGTCATACCACTTGATCATGGAAGTAGTCACTCCCTTTGAAGACGTCCACGGCAACAAGCCTGGCACC # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCAAGTGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCAAGTGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.30,-10.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 26013-24972 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNTE010000018.1 Lactobacillus delbrueckii subsp. lactis strain NCIMB 702469 NCIMB702469-i1-1_scf18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================== ================== 26012 36 100.0 37 .................................... TTGAACACAAAATTCATCAATGAGTTTTGCAGCAAGT 25939 36 100.0 38 .................................... GAATGATGAAGATGAACAAGTTCACGATCTGATTGCTA 25865 36 100.0 44 .................................... TGGCGGTTGTACCGCTTACAAGGCTCAAGGCTTTTACGTTGGTA 25785 36 100.0 42 .................................... GTTAAGTTGATCCCTGGTTCGATTGAGGAAAAAGTTTATAGT 25707 36 100.0 43 .................................... TTGAAATTTTGAAAGATACCTATAATAACACTTGCAATTACAA 25628 36 100.0 40 .................................... TGAAGAATTTTTAGAGGAATATGGAAACCTTGAAATTTTA 25552 36 100.0 39 .................................... TTATTCTGGTGAACAAACGTTGGCAACTGGTGATATAGA 25477 36 100.0 38 .................................... CGTAAGCTTTAGTATGTTTGAGCTTGAAAACGATCAAA 25403 36 100.0 40 .................................... TGATTGAGTGGTCAGGCAATGAATTTGCTGGACGTTGGTT 25327 36 100.0 39 .................................... AGAAATGAGGTAATAAAAAATGTTTTCTAACAATACCAG 25252 36 100.0 45 .................................... ATCCGAAAGGGAGAAGCAATCATGACTAACGAAATTATGAACTTT 25171 36 100.0 50 .................................... GGAGGAAAACAAAATGACTAAAGAAGAATTCTTGAAGCAAATCATCGAAG 25085 36 100.0 42 .................................... AGAATTGCAAAATTTTATTTGATGCAAACCGACAACAAGAAA 25007 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================== ================== 14 36 100.0 41 GTTCTCGTCTCCTTTTAGCGGAGATAAGTTTTTAGC # Left flank : AGATCTTAAACTACAAGACTCCAGAAGAGTACTTTGACACCGAACTTGACCGCATTTACCGGCGTAGATAGTCAAAATCTGCCAGATGTTATGGTAAGTGTTCAATTTATTCTTGCAATTGGCGAATTTAAAACAAGGAGGAAAAAATGTTT # Right flank : TGACCACCAAACAATCATTGATATTTCGCCAAAATCTACCATTTTCAATGTCCATAATCAGGACAAGTGATCAGACTATGGCTTAACTTTTGCCCGAAAATTGGACAAATAGCCAGCTAAATGAGAACTACATATATTTTACCATACAACCAACTAAATTATGATGAGCTTTGGGTTTGTGTTGGTCGACAGTGTCACTTCACTACCTAAAATCGTAATTTGTTTGTCGTTAACTTCATTCGGCAACAAGTACAAGGTGATCATTCCATCATCTGGAACTTCTTCTTTCAAAGTCTTGATCAAGTGCTTCCTTGTTTCCTCTGACTCAACTTCTCGTTCATAAAGACTATATTGCTTCATATCAAAGCCAAGCTCCACTAGTCTTTTCCGATACTCCGCAGCCTCTTTTCTTTCTTCTTTTGTGTTTCGAGGCAAGTCAAAGCTCAAAAGTAAAACCATTACTTGCCTCCTTCGATGAAAGTCGGAAGCTTTAAACTAGT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCGTCTCCTTTTAGCGGAGATAAGTTTTTAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //