Array 1 394330-392468 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQS01000011.1 Actinomadura latina NBRC 106108, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 394329 29 100.0 32 ............................. TCGCTTTCGGGACACGGCGGGGTGGTGGTGCC 394268 29 96.6 32 ............................A CTGGTCCGGGGCAGCTTGACGCCCAGATGCTC 394207 29 96.6 32 ............................G TCGGTGATCGCTGCGGCCTCCCCGGACGTGAG 394146 29 100.0 32 ............................. ACCTCGCGGCGGGTGCGGCGGGCGCTGGAGGA 394085 29 100.0 32 ............................. TCGCCGCGCGCCTACAGCAGGCCGAGCGGCAG 394024 29 100.0 32 ............................. GCCGCCGCCGGCGACGTCCGGCACAGCGCCTG 393963 29 100.0 32 ............................. TCACCTGGGACGGGACCTAGATGTCCGACGAT 393902 29 100.0 32 ............................. GGTGGTGGGGCGCGAGGGTCGTCGAGGCCAAC 393841 29 100.0 32 ............................. TGGTTGTAGTCGGTGAACCATGCCTGGGATGC 393780 29 100.0 32 ............................. CCGCCGCCGTCGGCGCGGTCCTGGCCGCCGTG 393719 29 100.0 32 ............................. CCGTCGTTCCCGTTCCGCACTCCACTGGAGTC 393658 29 96.6 32 ............................G CAGGTGCAGGCGGAAGGGTGGCCGCACCTGTA 393597 29 100.0 32 ............................. TCGCCGAGCCCCTCGGTGACCTCCTCAGATCC 393536 29 93.1 32 .........C..................T GCTGATCGATCCGGGGAGGGGTGTATCTCCTG 393475 29 96.6 32 ............................T CTGCGCCAGCGACAGCCCGGCACGCCGTAGCT 393414 29 100.0 33 ............................. AACGAGGTCGCCGACACCGACGGCGCCCACTCC 393352 29 96.6 32 ............................G ACGGTGCGGGGGCCTGGGGGCGGCTTTGTGTG 393291 29 96.6 32 .................A........... CGCGCGACGACCCGCGAGCCGACGCCCGGCGA 393230 29 96.6 32 ............................G ATCTCGCCGGCCGGTGAGACATCGTTGGTGAG 393169 29 100.0 32 ............................. CCGTGCCAGGCGGAATCGTTCCTGGCCACCCA 393108 29 100.0 32 ............................. TGGAGGCGGTCCGCACCACCGAAACCGACGTG 393047 29 96.6 32 ............................G CACCGGTTCGACATGACGATGGTGGAGGTGCA 392986 29 100.0 32 ............................. ATCGCGCACCACGGCGCACCCGGCATCCCCCA GG [392968] 392923 29 100.0 32 ............................. GCCTCACCGAGCCGCTACAGAGCTTGGACGCC 392862 29 96.6 32 ............................G GGGTGCCGTCAGACTGCCTACCGGGCGCGGCA 392801 29 100.0 32 ............................. CCGCGCCACCGGAAGACGGAGGAGTGATGGAC 392740 29 100.0 32 ............................. TGCACCGCCGGCACGACTGCACCCGCCACGTC 392679 29 96.6 32 ............................T CACGTGGATCGACGGCACCAAGTGACCCCGGT 392618 29 96.6 31 ............................A GCCCGTCACAGCCTCTTGCGGGATGATGGGG 392558 29 89.7 32 ..................A..C......G ACGATTCGGTTGAAGACCAACGCCGGCGGCGG 392497 29 79.3 0 ...................C.G...GGGG | C [392474] ========== ====== ====== ====== ============================= ================================= ================== 31 29 97.6 32 GTCGGCCCCGCGCCCGCGGGGATGGTTCC # Left flank : ACCGGTAGCGCAGAACCACGCGCTGATCCCACGCCAGCCCCGCACCCAGAACACGCGCGGCACCTGCAGCATCCATATGCTGGAACGCAGGAGTAGCCTTGCCGATATCGTGAACACCGCACACCCACGCAAACAGCCGCCTTCCCCCGCCTTCGCCGGCAACACCGTCCAACGCCCGACGGACCGACGGCGCCAGGTAATGATCCCAAACAAGTTCGGCCACCGCGGCAGTATCCAGAAGGTGCTGCACTAACAAATTTGCCTGGCCACCAGCTTTACCCGCGCTCTTGCCCCACAGCACCCCAAGCGGATCTTGCGTGTACGGGACTGGTCCTTCGATACTCACACCCGGGAAGGTAGCGAACCACACCGACAAAATAACGCTCATGACTGAAACACGGCGCGCAGTCAGATCATCACGGCTGTCAGGCATCACCATGATCACAAACCAACCGAATGGAAACCGGGTCTCTCCCTGCTAACGTCGCAGGTCAGCAAGG # Right flank : TATTGGAGGCATAGAAACGTCCGGCAGCCCGGTGCAGTGGCTAGCCGACCTAGGGGACGGTGAGTTGGGCCTTAGCGCGGACCATCGGACCTGACCTCTTGGCCGTGATGTGGCTGTGTGGTAGCTCCGCACCACGCCAGAAAATCTTCCCTTTTCAAAATCGTCAGCCTGATGCGCCGTCACCGCCGTCCGTGGGTAATACACCTAGCGGACAATGTTCGGGCGTGGCCTCATAAATAGGCTGAGGCGGCGTTTACGTTAATTGACTAAGATCGTCTACGCATACGCGAACGGATGCTGCTCTTCGGGGTTATTCAGCGTCGAGCAGGGCTAGAAGTGCCGCTGTGGGGACGCGGTAGCAGGAGCCGATGCGGATTACCTTGCAGGGGAACTGATCTTCTTTGGCGAGTTGGTAGGCATAGGTGCGGGAGAGGCCGAGGGCTCGGGCAGCGGTGACGATATCAACGACGGTGGGAAGTTCGGCGAGGTCTGCATACTTG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.87, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCCGCGGGGATGGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 106207-103052 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQS01000036.1 Actinomadura latina NBRC 106108, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================== ================== 106206 29 96.6 32 ............................T GGGCCCTCATCGAATCCGACATGCACGACGTG 106145 29 96.6 32 ............................G ACGACGCGCACGGCGGAAACAGGACGTACACC 106084 29 100.0 32 ............................. CACTCATGAGGCTACCTGAGCCGTTCCACCCC 106023 29 96.6 32 ............................G CAGCATCCGAGCCAGAGGCTCAGGGCCGCTGG 105962 29 96.6 32 ............................T GGTGTCGGTACCAGTGCCGACGGGAACGGGCT 105901 29 100.0 32 ............................. GCGCCGGGCGTGACACCCCGGGCCCCGGGGGA 105840 29 100.0 32 ............................. CGTGTTCCTGGCCGATCTCGCCCCGGACATCA 105779 29 96.6 32 ............................T CAACGGGACTGCACAGGCGTCCGGACTTTTCC 105718 29 96.6 32 ............................G GCGACCGCCTACCCGTCCGCGGCGGCCGGGAC 105657 29 100.0 32 ............................. CCGTACCGGTCCGCGTCGAGGTCGTAGCCGAT 105596 29 96.6 32 ............................T GTGGAACATGTGGAATACGTGGAACATGCCAG 105535 29 100.0 32 ............................. CCGAGCACGTGAAGGGGGCGACGTGGGCGACG 105474 29 96.6 32 ............................G TGCAGTCCAGCACCTTGATCCTGCGGGGCTCG 105413 29 96.6 32 ............................T TCGTCGGGGTGTTCGGCGGCCAGGCGGCGGCG 105352 29 100.0 32 ............................. CCTCAGCTCTGGTACGGCGGCAGTGCGGCGGA 105291 29 100.0 32 ............................. TCGGCGACCATCGCCACGGCGTCGGAGTCGGA 105230 29 100.0 32 ............................. TCCACGTAGTCGCCCACCTCCAGCCGGATCGT 105169 29 96.6 32 ............................G AGCGTCAGGAACGCGGTCGAGCGGACCCGGGC 105108 29 100.0 32 ............................. GGGGATGTGGAACACGGGCCGCGGGGCCGTCC 105047 29 100.0 32 ............................. TCGTTCTCGATGATGCCGTCGAGATCGAGCAC 104986 29 100.0 32 ............................. GTCGGCGCGCCGTCCGGGCTCTTCCCCGCTCC 104925 29 96.6 32 ............................G GACACGTCGTAGCCGAGGAGCGTCTCCCGCTT 104864 29 100.0 32 ............................. CCCCCATTGGCGACCGGCACAGCGGCGGTCTC 104803 29 100.0 32 ............................. TCGGCGCACATGTCGGCCTCCGACGGGATCGC 104742 29 96.6 32 ............................G CCGCCGCCGCCCTCGGGGGTCTCCTGCAACGA 104681 29 96.6 32 ............................T TCCGCGTGCAGTTCGCCGACGTCATCGCCCCG 104620 29 96.6 32 ............................G CGACGCAGTACCGAGGCGCCCACTGGGACCCC 104559 29 96.6 32 ............................G AGGGCTGGGGCAGCAGCGGCTACTACCCGCGT 104498 29 100.0 32 ............................. AGGTCGAGCTGGACGGGCTCACGCGGGGCGTG 104437 29 100.0 32 ............................. GGCAGCCGGTCTGGGACGAGACCGACATCCGC 104376 29 96.6 32 ............................T CCGCGGGGGACGGTGCCGCTGCCGGGGCGGAC 104315 29 100.0 32 ............................. CGCATGTCCTTGCGGTAGACGGACACGCGGGC 104254 29 96.6 32 ............................G TTCGGCGTCGAGTTCGGAGGGGTGATGTCGTT 104193 29 100.0 32 ............................. TGCCCTCACACCCGCCCACATGTCGGAGCGCG 104132 29 100.0 32 ............................. GGGCGGGCCGCGTCGGCCAGGACCGGCGCGGC 104071 29 100.0 47 ............................. GGCGGGGATGGTTCGGCGTTCGTGCGGGTCACGGCCACTGTCGCGGG 103995 29 96.6 32 ............................G CCGTCCACACGCTTGCCGACGGCGAGACGCTC 103934 29 96.6 32 ............................G CGCTGGGCGCGCGGCCGCATGGTCAAGTCCAC 103873 29 96.6 32 ............................G GCGTCGCCGCCATCACGGCGAGCCTCTTCGTC 103812 29 100.0 32 ............................. TACGAGGGCGAGTTCCGCAGTGACGGCGACGT 103751 29 89.7 32 ..........................GAG CGCTGGCCGTGCTGCGCAGCACCAGCGCCTGT 103690 29 100.0 32 ............................. TCTCCCCCCGCCCCCTCCCCTGACGCGGCCTG 103629 29 100.0 32 ............................. TGGATGATCTCCGCGTCCCCGTCGTGGGGTGC 103568 29 96.6 32 ............................G CTGCACAGCGACCGGTTCACTGCTGCGGCGGC 103507 29 93.1 32 ...C........................G TGTGGGGACCATTTTTGAGATGGGTTGCTTCC 103446 29 96.6 32 ............................T GCACATCATCGCGATCATCCCCGGCCCCGTCA 103385 29 96.6 32 ............................G CTGGGGTGGCGGTGCTCGGCGCCGTCGCGGAT 103324 29 96.6 32 ............................G TACGTCTCGACGGACTCGACGCTGTGACGTCC 103263 29 100.0 32 ............................. TCCTTGATGCGCGCGTCCCGGTCGGCGAGCTG 103202 29 96.6 32 ............................T ACGGCTGCCCCGGCACATGCCCCTTCGGGCGA 103141 29 100.0 32 ............................. CTGGCCCCTGGCTCATACTCCCCGCGCTCGAT 103080 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= =============================================== ================== 52 29 98.0 32 GTCGGCCCCGCGCACGCGGGGATGGTTCC # Left flank : GTGCCGCAACACCGCGCGCTGATCCCACGTCAGCCCTGCGCGCAGAACGCGGTCGGCGCCGGCAGCATCCATATGCTGGAACGCCGGCGTTGCCTTGCCGATATCGTGGATGCCGCACACCCACGCCAGCAACCTTCGGCCCCCGCTTCCACCGGCCACGCCATCCAAAGCCTGACGGACCGACGGCGCCAAGTAATGATCCCAAACAAGCTCAGCTACCGCAGCAGCATCCAGCAGGTGCTGCACCAGCAGATTGGCCTGCCCACCAGCTTTACCCGCGCTCTTACCCCACAGCACTCCAAGTGGATCTTGGGATTGCCGAACCGGCCTTTGGATGCCCACACACGGGAAGGTAGCGAATCACACCGACAAACGAGACTCATACTGTGAAACCACAGGCAATCCAATCCAGATCATCACGTCTCGGAGACCCCACCGTGATCACGAACCAACTGAATGAAAAGCGGCACCACCGCTGCTAACGTCGCAGGTCAGCAAGG # Right flank : GTTTCCGACGCGTTGGCCCAGGCGCCCGCACGCCCCGCTCGACAACCCGGACGCCGTCACCACCCCGCCGGGCTCGTTGCGGGAGGCCAGGGCTGGCGACCGGGTGGCCGCCATGGCCGACCGGTTGCCTCAGCCCAAACCGGCCCAGCCGCGCACCTAGGACGGCCGTCCATCTGGTCCTGGTGGAGGATCTCAGCGAACATCTCCCGCAGGTGCAACACCGTCAACTCGCCCAGCAGCAGTCCACTCAGACGCGGGTCCAGGTAGAGGTGGAGGTGGTTGGCGTACCCGGCCACTGTCGAAGCCGCGCCCGGACGAACTGGCCGGTGTAGTTGTTCTTGTCGGTCCAGGTGATCGGTCCAGCGCGGATCGGCGGTATCCCCCAGGCGGCCGCACGGGATTAGCTGTAACCGGGGTCTTCCACACGGCCCGTCCGGGTTCGGACCTCCACAGAGCGGAGCGTCCGATGGGAATCCTGACCGCCGTGCTCGTGATCGTGG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.66, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGATGGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 39550-40920 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQS01000045.1 Actinomadura latina NBRC 106108, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 39550 36 100.0 33 .................................... CTCGACCAGCGCTGCCGCGCCCTTTGGGTTGCT 39619 36 100.0 34 .................................... CGTACGCCTTGGCGGTGGGGGCGGGGGATCTTCA 39689 36 100.0 36 .................................... CAAACTTGAGACCCTCCTCCAAGCTTACGTGTGTCG 39761 36 100.0 37 .................................... CAGGCATCATTCCTGTCCGTCTCCCCTTTCTTGTGTG 39834 36 100.0 35 .................................... CCATCTACGATCTCGATGGTTTCGCGGGCGACTTA 39905 36 100.0 36 .................................... CTGTAGGAGATTCTCACCCAGAACAGGGCTTAAAAA 39977 36 100.0 33 .................................... CCCGTCAAGTGGCAGGCCGCCAAGGCCAGCCTT 40046 36 100.0 32 .................................... CGGTAGTCGGAGCGGCAGCCCATCATCGTGTA 40114 36 100.0 38 .................................... TGGTCGCGTGGGCAGGACGACGCCAACGCGCAGGTCGA 40188 36 100.0 32 .................................... TCCCAGTCGAAAGGTAGCACCACTAATGAACA 40256 36 100.0 33 .................................... TAACTCCTCTTGGGTCGGACGGAATGAAGTATG 40325 36 100.0 32 .................................... GGAACCGAGCCGGCACTGGACATTGACCCTGA 40393 36 100.0 36 .................................... CGGTGGGTCGCGTCGCGCAAGATGTCCGCCTTCTCC 40465 36 100.0 36 .................................... CCTTCGGCATGCTCGTGCACGCCGCGATCTGATGGT 40537 36 100.0 33 .................................... GGAATCCTGGCCCTTCGACTTGCGCGGCTTCGG 40606 36 100.0 33 .................................... TCCCACCCTCCTTAGAGGGTTCTTCATAGGGTA 40675 36 100.0 34 .................................... TCGGCGGGACCGGTGATGGTGTACTCGATGACAA 40745 36 100.0 35 .................................... CGAATCCTGTAGCCATCAACTCGCTTGCGACTTGA 40816 36 100.0 33 .................................... GCCACGGCGTCGTACAACGGGTGGTGCGCGGAA 40885 35 80.6 0 .........-.T..T....T..........C.C.C. | A [40898] ========== ====== ====== ====== ==================================== ====================================== ================== 20 36 99.0 34 GTCGCAGCGACCTACAAAACCGCATCGGATTGAAAC # Left flank : AGGAAGGCGCGCTGGACGATGCGGTCGCAGATGGTCGGCAGCCCCCGCGTCCGCAGCTTGCCGCCCCGCATCGACCGCACCGGCCGCAGCGGCTGGGCCCGGTACCTCTGCTCCCGCAGCAGCGTCGCCAGCGCCGTCAGCCTGGGGCCGACCTCACGGCCGAACACCTCCGCTGTGACCCCGTCCGCCCCGGCCATACCGCTGCCGGCCGCCACCCGCGACCACGCCGCCCACAGCACCCGGTCACTGGCCAACCGCTCCACGAGCCGGGTCGTCCGGCCGGTTTCCTCACGTGTCCTCATGCCAACAACCGATGGACGAACGCCCTCCCGGCCATTTAAAGAATTGTCAGGAGGTTGGCGCACACCCCCAAAACCCGCCCTGACCTGCGGAGACGATGCTCCGAAGATCATCTTCGAGGCCGCTTCAAGATCGCGCCCGAGGAGGTTGGCGCATGATCTTGCAAACCCGCAGGTCAGACCCCCATAATCTGAGGTACT # Right flank : CCGCCTGCGCGCCCACTCTTCGACGGTACTTTGTGTGATCGCATAGTTCGGTGAATCCGAACCGGGCCGAATTCCTCCTCGTGCGCGGGCGAGATGCGTGGCGTGAACGAGTGGCATGCGAAGGTCGCACAGGTGGACTATGCGGAAGACTCGGCGACACTGTTATGGGCTGCCGAATCTTCGGGGCATTCTTATGGGGCAGACTTCGCTACCCGAGCGTTGTCGGATCAGGTGGAGATTAGGGGCGGGAACCGTTCGTAGGTGTTGTTGGCGGCGTCGTAGGTGTAGGCGGTCCAGCGGCCGTGGTCGGCGGAGGCGAGGCGTGCGCCGAGGGCTACGGTGATGGCGACCGGGCCGCTGAGGAAGATGGCGTGCCGGCCGGTGCGGGCGCCGTCCGGGAGTTGTGTTTCGAACCAGGTGCGGCAGATCTGCTCGGCGGTGGCCGTGAAGCTTTCGGTGTTCTCCGGCAGTTGACTTACCGGGCTGCTCAGGCAGAGCAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGCGACCTACAAAACCGCATCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [12,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 5254-4621 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQS01000052.1 Actinomadura latina NBRC 106108, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================= ================== 5253 29 96.6 32 ............................T GACGCGCGTCAGCACCGGCAGCGGCTACCGGG 5192 29 100.0 32 ............................. TGCGCCATCGTGCGCCGCACCTCGGCACAGGC 5131 29 100.0 32 ............................. CCTTCTGACGCGCGGCGCCGGCGCGGTGGCCG 5070 29 100.0 32 ............................. TCGATGCTGTACGGCGCCGCCTGGCGCGCGGC 5009 29 96.6 32 ............................G CCGTCGACCAGATCGCCGACGAGCACCGCGGC 4948 29 96.6 32 ............................G TGCACCGGTCCGCCGCCACAGTCGAGTACCTG 4887 29 100.0 32 ............................. AACGCCGTCACCGTCACCGCGCCCTCCTCGCC 4826 29 93.1 89 ...........................TG TCCGCCGTGCGGGCGTTGACCGTGTACGAGGTCTCGGCCCCGCGCCGGGATGGTCCGCGGTCCGGAGGTCCGCTCCATGACGGCGGCGG 4708 28 96.6 30 ....................-........ ACCCCCGGCCGACCGCCGCGACGACCCCGC 4649 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ========================================================================================= ================== 10 29 97.6 38 CTCGGCCCCGCGCCCGCGGGGATGGTCCC # Left flank : ACCCGGCTCCCCATCGACGAGGACGTCAACCAACTCTGGGACGAACACGCCGGAGCAGTCTCCGGCGGCGTGAACTGGTCCGGAAGCGAAGACCTCATCCAACCAGGGATGGGCGACGAGCACCTCGCGATCATCGGCCCCGAATTCGAACCACCCAACGAAGCCACCACATGACAACCGTCATCGTCCTCATTGCCGCCCCCGAAGGACTCCGCGGCCACCTCACCCGCTGGATGATCGAAGTACATGCCGGAGTATTCGTAGGCAACCCCAGCCGCCGCATCCGCGACCGCATCTGGGACCTGCTCGCCACCCGCATCGGTGACGGCCAAGCCATCCTGGTCGAACCAGCCACCAACGAACAGGGCTGGTCCATCCGCACGGCAGGCAAGGATCGGTGGAAGCCCGTCGACTTCGACGGCCTCATCCTCTCCGCCCGCCGTCGAAACCAACTAAACGAAAACCCGCCCCCTTCAAGATAACGCTGCAGGTCAACAAGC # Right flank : CCTCCGCCTGCACGCCGGTCGGGTGCTCGGCCTCGGACCATCTCGGGCCGGACCGTGAAAGCACTTCTGGTGAAACGGGCTCAGGTGAGCCGGTCGCGGTTGGTGTTGGCTTCCATGCGTATGGCGTTGACGAACTCGTCGTCTTCGGGGGTGTCTTCCTGGTAGATGAGCCAGCAGCCACGGATGCCGTCGAGGATGTCTTCGAGGAGGTCGTGCGCGGGACGTTTGGGGTCGAGCGGTGTAATGCGGAGTTCTTTGAGCAGGGCGTTGCGGAGTCGTGGGTCATGGTGCTGGTCGGCGAGTTCCTCGGCTTGGGTGACGCGTTCGAGGAGCGTTTCGAGGTCGGGGATCTCGCCTTCGGCGACGGTCATGGCGCCGCGGATCAGGCCGGTTACCGCCTCGTATGGGCTGAGGCCGAGTTCGAGTTGTTGCAGCACGATGGTCGGGGTCTCGTGTGCGAGAGCCTCGATGTTGTCTGCCTCTTTGATGATTTGTGTTGG # Questionable array : NO Score: 5.32 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.50, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGGCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 119-505 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQS01000026.1 Actinomadura latina NBRC 106108, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 119 36 100.0 34 .................................... TCAATGTGTTCCGGACTCAGTCCCATTGTTTTCC 189 36 100.0 35 .................................... GCTGTCGCGAATGCCGATGGTCGGCGCTTCCGCGA 260 36 100.0 35 .................................... CATCATGGCGAGCACTTCCTGGACCGGAGGTGAAA 331 36 100.0 34 .................................... CTGGTGTCCCATGGTCACTCCCGACTTTGAGGAT 401 36 94.4 34 .........T...G...................... CTGTCGACCTTGTCCTTGCACCCGTTCGCGAAGT 471 35 86.1 0 .C.....-.......................A.T.G | ========== ====== ====== ====== ==================================== =================================== ================== 6 36 96.8 35 GTCGCAGCCCGCCACAAAACCGCATCGGATTGAAAC # Left flank : TGACCTGCAAGAACAGCGCTGTAGTGATCGTTAATGCCCCTCGTGACGGAGGTCTTGCGGAGAGGTTGGCGCATGATCTTGCAAACCCGCAGCTCAGAGGCACGTAATCAGAGGTACTG # Right flank : GGGACGTCGGTGAACGCCGGGCCTTGGATTCACTGACCGCCGAGGGGGGCGGTGGGAAGGGGTTGACGTGGACGGAGGGGGCCTCCGATACTGGTGAGCGTTCGACGGCTGCGGCCGAAGAGCGTTTCGAGGCCTTGTGCCTCCTGAGGAAGACCGGGTCTCCGGGTTTCACACCTGTGGGACGGACGGTCTGTTCGGACTACCTCAGGAGGCTTCGTGCGGCCCATCTCCCATTTGGTCGACCGTGATGACGCGATCGCGTTCGCGGCGTTCCACACGCTCGTTTCTCCGGCGTTGCGCGTCGCTGCGCGCGGACCGCTGGATCGGGCCAGGCACGCCGGTCGGGTTTGTAGCGCGCCGGCTGGTCAGGGATGGTGCGCCGAGTGCGAGGCGGCGGCCGACGACCTGCTTCTGGAGAGCTTCGGTCGGCTGCGCGGCGCGATCGGCGGGGCGATGCTGGTGACCAGTTCGGGGCAGCCTGTCCGCGAGATGGTCCTGGT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGCCCGCCACAAAACCGCATCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [11,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.40,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA // Array 2 5786-6750 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQS01000026.1 Actinomadura latina NBRC 106108, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 5786 36 100.0 34 .................................... CGGTCGTAGAAGCAGGCGCCCTTCACGTTGTAGA 5856 36 100.0 33 .................................... TTCAACGAGCACGACCTGGACTGCATCAGGAGT 5925 36 100.0 37 .................................... CTTCTTCTTCGCCCCGGCGAGCTGGAGTTCGGTCATG 5998 36 100.0 36 .................................... CTGTCGGTGTGAGTCATGGTGACGTGTCACCCTTCA 6070 36 100.0 36 .................................... CAGACATACCCCGCCTCTCGTCAGTTTTGCGCGATC 6142 36 100.0 33 .................................... CCCTGGTTGGCGCTCTGCTAGGCGCCCCAGTAG 6211 36 100.0 36 .................................... CTCTGGCACCGGCCATAGCGCCCCCCGATGAAAAAG 6283 36 100.0 32 .................................... CTAGCAGGTACACTTTGTACCCGTCTGTCTCG 6351 36 100.0 42 .................................... TCATGACAAGAGCGTCATGACCCGGGTCCCCCGAAAGGTATA 6429 36 100.0 35 .................................... CGACCGACTAGTGTCAGCCGTTGGCGACGTTGGGA 6500 36 100.0 35 .................................... TCGCCCGGCCCTCTGTGGTTACCTCTGTCGATTGG 6571 36 100.0 34 .................................... TGTCACCCATGATCGACTGGCCGTTCTTGGTGAA 6641 36 97.2 34 ........................G........... GTCGACGGGCGCGTGCCTGCGAGAGACCCTTGTA 6711 36 94.4 0 ............G......................A | ATCA [6739] ========== ====== ====== ====== ==================================== ========================================== ================== 14 36 99.4 35 GTCGCAGCGCTCAACAAAACCGCATCGGATTGAAAC # Left flank : AGGAAGGCTCGCTGGACGATGCGGTCACAGATGGTCGGCAACCCCCGCGTCCGGGGCTTGCCGCCGCGCATCAGCCGGACCGGCCGGAGTGGCTGTGCCTGGTACCGCTGTTCTCGCAGCAGCGTAGCCAGGGTCGTCAGCCGGGGTCCGACCTCGCGGCCGAACACGGCCGCCGTGACTCCGTCCGCCCCGGCCATGCCACTGCCGGCGGCCACCCGCGACCAGGCGGCCCATAGCACTCGATCGCTAGCCAGCCGCTCAGCCAGCCGCGCCCCTGCCCTCGTCTGCTCGTGTGTCCTCATGCCCACAACCGATGGACGAGCAGTTTTCGTGCCATTCACAGAATTGCCAGGAGGTTGGCGCACACCTCGAAAATCACCTCTGACCTGCACAAACGCCTGTTTGAAGATCGTCTGCGACACCTCTTCAAGATCGCTCGCGGGGAGGTTGGCGCATGATCTTGCAAACCTGCAGGTCAGACCCCCATAATCTGAGGTACT # Right flank : ACGCGCGGTCCCGTGACGGGGCCGCGCGTTTGGTGTGGGTGATGCGGTCAGGGGCGTGGGGGTGGAGTGGGTGTTGAGAAGTGGGGTGGCGGTGTGGCGTCGCCTTCGCCGCGGGGTGATTCGAGGCCGCAGGCGGGGCAGTCGGGTTGGGGGTCGGCATCGATGGCGGTGAGTGCGGGGCCGGCCAGATCGATGAGGGTGTACGGGCGTGGGCGTGGGCGGTGCCAGCCGGTGAGGAGGTTGAGGGCCTCGCCGAGGGCGATGCCGGCGATGGCCTGGTTGAGGAAGATGACGCTCGGGGTTGGTTCGTCGGGTGCGTCGTGAAGGTATCCGGCGCTGCGCTTCGCGGTGGTGAGGACCGGGTCGAGTTCCATGGAGGCGGCTGTCGGATCGTAGCCGGACAGGCATAGCAGGCAGGGCCCGCCCGGCGTCACGGTCGCGACGTGTCCGGAGACGTCGAGCGGGTTGGACCCGTTCGTGGTGATCTCGGCGCCGGTGTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGCGCTCAACAAAACCGCATCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [12,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.40,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA // Array 3 29755-28869 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQS01000026.1 Actinomadura latina NBRC 106108, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 29754 30 100.0 38 .............................. CGGACGTCGTCCGGGTCGGCGCCCAGCATCCGGCAGAT 29686 30 100.0 37 .............................. GTGCGCTCGGACCGCACGGGGGTCCGAGCCCATGAGG 29619 30 100.0 36 .............................. GCGCGCCGCCCGAGGACGACGCCGGCGCGCCGACCC 29553 30 100.0 35 .............................. CGGCCGCCCGCGCCGCGTCGCAGACCTACTACGTC 29488 30 100.0 35 .............................. GTGTCGCCCAGCGCCGGTTCCCACGACAGGCCCCG 29423 30 100.0 36 .............................. GCGAAGCTGCCGGTCAGTGTTTCGGTCCAGGTCGCG 29357 30 100.0 34 .............................. AGGCGGGCGGTGACGAGGTCGAGGTTTTGGGGGG 29293 30 100.0 38 .............................. GGCTTGTCGCAGGCGACGACAACCAGGCCGAGTTCCTG 29225 30 100.0 36 .............................. CCGGCGGCGGGCAGGACGGCGTACAGCAGGTCACCG 29159 30 100.0 33 .............................. ACCTGCCGGGCCAGGTCGTTCGCGAGGGCCAGC 29096 30 100.0 34 .............................. CCCAGCACCGCGCACACCGCCCGCCACTTGGCCT 29032 30 100.0 37 .............................. CCGAAGAACAGGGCGAGATCCTCGCCGCGGCAGTTCG 28965 30 100.0 37 .............................. GCCATGGTGTGCGTGATCATGGCCTGCCCGAGACCGC 28898 30 90.0 0 ......................A..T...A | ========== ====== ====== ====== ============================== ====================================== ================== 14 30 99.3 36 GTCCTCATCGCCCCTGCGAGGGTTCGCAAC # Left flank : CACCACCGCGACGCCCGCGCCGGCCAAACCTGGTTCGTAGTGACTCAGCGAGGACGCCTCGTGGCGTACTGCCGCGACATCGAAGAAGTGGCCGAATACGTCAACCTCGCTGATCTCCGCGGCCCTGATGCAGCCGAGGGCGCCGGATAGTGCCCTTATCAAGAGCAAGATCAAGACGACCCCTGTGTTCAGGCCCGCAGCACGCCGTGCTTCTCCTCGTAACGAGATTCTGCCCCTGCCTGACGAAGTCTTCCGGCCGTCCCTACGCTCGGACCGTGCGCACTTGTCCTGATCACGACGCTCGTCGAGGACTACCAAGCCAACGTCAGCGGCGGCCTGGAGGGCGTCCACCCGGGGGACCCGCGAATGGGCACTGACAGGCACCGTTCAGTCCCGATTTCAGCGACACCCCGGGCTCAACTGCACGACCGGAGGGTCGCTGAAAAATCGACCAACATGGCCGCTCCTACGCCACGCGCGACCTGCGGCTTTACCATGGG # Right flank : CGCATCTTCGGCGTCTGCCGCCGGGGCAGCCTCGGGGTTCGCCGTCTCGACGGCGGTTCGCAAGCCGTGATCGCGGACGAGGACCAGCGACAGGGCGAGTCGGCTCTACCCTGTTTTTCCACATCAAGCGATGTCGAAAGTCATAGGTTCATCGCGCTTGTAGCGGCGGTATTGCTTAGCCAGGGCGTCGAGTGGAAGCAGGGGCCATCGAGTGACGAGGCCGGTTGTCTTGTCGATGACCAGAGTGGTGACGGCTTCGACTGTGGGGACTGGGGGTGGATCGGGGATGGAGACCAGGATCGGGATGGCCTGGTAGCCGTCCTCGAACTCCTGGAGGTGGAGCACGATCGGGTCTTCCTGGCGGTCGGGTAGGTATTGGCGAGCGCGGCGCCAAGCCTCGGCGGCGTCGAGGGAGACGGAGCGGTTCGGGGTGAGCGGCGAGCCGTGGGCGGGGTGGGCCTCAGGGTTGAGGCCTTCGTCTTTCTGGCAGCAGTGCGTGC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTGCGAGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.40,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 4 51863-50258 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQS01000026.1 Actinomadura latina NBRC 106108, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================================================================================================================================== ================== 51862 30 83.3 158 .C.......................ATCG. CAGGACTGTTCGAACTGGCCAAAGTCCCAGATATCGGGTACCGCTCTGCCCGCGATTTCAGCGACACACCGGGCCCAACTGCACAACCGGAGGGTCGCTGAAGAATCGGCCGAAACCACGGCTCATGAGCCATGCCCCACCTGCGGCTTTACCATGGG G [51835] 51673 30 100.0 35 .............................. GCGGGCCCGGCCGGGTCGGGCCGTTCAACGAGCCG 51608 30 100.0 37 .............................. GGAGCGCTCGGTCGCGCGGGGAGCTCCCGGCCTCGGT 51541 30 100.0 37 .............................. AAGTGTTCTGGGACGCGCCCATCCTCCACGTCGCGGT 51474 30 100.0 37 .............................. ACGGCGCCCGCTCGCTGCAGGACATGCAGAACAACCT 51407 30 100.0 36 .............................. TCGCCGAAGATGAACGCGCTGCCGGCCGCCACATCC 51341 30 100.0 34 .............................. CTGACCGTCACGTTCGCGAACGGCACGTTCCCGA 51277 30 100.0 34 .............................. GGCTGCGGCGGCACCTGCGCCCATGCGGGCAGGG 51213 30 100.0 38 .............................. GGTCACTCATCGGCGTCTCCGTCCTGCTCGTCGAGCAG 51145 30 100.0 38 .............................. CGGCATTCGTGGGCGCGGCCGTCGCGGGCGTCGGCGGC 51077 30 100.0 40 .............................. ATGTCCTGCTGGCGGGACAAGGGCCCGCCGCGCCTTGCTG 51007 30 100.0 35 .............................. GCGCGGTCCTGGCCGCCGTGTACGCCGCGGCGATC 50942 30 100.0 36 .............................. AGCGCGGCGGGCATGACCTCGCCTATGGAGGCGGTC 50876 30 100.0 35 .............................. TCGGTGCGGTGCCATTCCTTCGACGTCAGGACCCA 50811 30 100.0 35 .............................. GCGAACTCCTCGCGCCGGTCGAGGAACATCCGCAT 50746 30 100.0 38 .............................. GCGCAGAAGGGGTGGTCAGGTGGCGGGCAGGCCCTTGA 50678 30 100.0 37 .............................. GCGGTGCCGCGGACCTACCGGGCCGAGGACTCCTGCC 50611 29 96.7 24 ..........-................... CGGTCCCTGGTGGTACCACTCGCG Deletion [50559] 50558 30 90.0 35 T..............GT............. CAGAAGACGGGGGTTGCGCCGGTTTCCATGATCGC 50493 30 90.0 36 T..............GT............. AGCGTGGCCTTCGACCCGCAATACGCCGCCGCGCCC 50427 30 93.3 42 ...............G...........G.. GTCATCGCGGCGGCCGCCGGCCTGCTCGACGAGGGACATGGC G [50405] 50354 30 76.7 37 A.G.C......T...G......C..A.... CCGCACGTGCACCCCACCACCCCGTCGGACGTAGTCA 50287 30 73.3 0 ..........A...CG...T...CT..C.T | ========== ====== ====== ====== ============================== ============================================================================================================================================================== ================== 23 30 95.8 42 GTCCTCATCGCCCCTACGAGGGTTCGCAAC # Left flank : GCTTCGCCGCCGGAAAGACCGGCGCCCCATAGCCGAATGGGACCAATCCGTGCGGCCCCCAGCCCGACTGGTGCAGGGTCCGCCCCAGCTCGGGCGCCCCTCGCTCCAGCAGCGCGTAGGACAGGGCCCGCCCCGGAGCCAACACCTCGTCCCATTCCAGCTCACGAGCCCCCGTGTGGAAATTCACCTGTAACCGCACTGCGCCCCGTCCTTTCCTCGTCCTCGGTACCGGCCGAAGACCCGGCCTTCACATGGTTCCGATGGACGGTTCTTGTCAGACCTGCCTGCGAACGTGAGTCGCAGCTTCTCGCCCGGTCCCGGACGCTACACGGCAATCGCCTCAGAGACCTTCAAAAGCAAAGAAGCTAACCACGAGTAACCCTGTCCGCATGTGGCCCTGGCTCCACTCAGAGCTATGCTGAGCAAGATCGCCTTGCCAGGCGCTACCCGTGGGGAGTCGCAACTGGTTGGGTTCCTTGCTGGACGCATTCCGCAAACCC # Right flank : GAATACCTGCCCCGGCGTCTCCAGGCCAAGGGCTCAGCGCCTACGTCCGGTGACTTATACCTGGCGGCCGTGAGAAGCGTCTGAGCATAGTGAGGGGACGACTCCATCACACTGGTCGGTTGGGGATGGTTGCTACCGTCGTGCCGGTGACGCGTAAGAGCACCACCGAACGGACCAAGTGGATCGTCCACGGCGAACGGGTCGTGGACGCGAACCGCCACATTCAGGTCTCGATCGCCAACGTCGAACTGCCCAACGGTGTGCTGTTCGAGCAGTACGTCTTCCGTGTGCCCCGATGCGTCATGACGGCCGTCCTTGATGACGAAGGCGACAACATCCTCCTGATCTGGCGGCACCGGTTCATCATCGATCAGTGGGACTGGGAGGTGCCGGGCGGGTACGCCGAGCCCGGTGAGGATCCGGCTGCCACTGCGGCTCGGGAGGCGGAGGAAGAGACCGGGTGGCGGCCGAAGAACCTGCAGTTCCTCTTCTCGTTCCAG # Questionable array : NO Score: 2.51 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.53, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTACGAGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.40,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [30-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 5 60495-61987 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQS01000026.1 Actinomadura latina NBRC 106108, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 60495 30 100.0 34 .............................. AGCGCGACGGCGCGCGGCAGGAAGTGGCCTGCGG 60559 30 100.0 37 .............................. AGCCGCCCGTGGTTGGCGAGGACCTGCAGGACCAGGG 60626 30 100.0 37 .............................. GTGTGCTGTGTCCCGCCGGTGGCGGCGTTCCAGAATG 60693 30 100.0 37 .............................. CCGATGTTCTGGCTCGTCGCGGTCGGCACCCTGACGC 60760 30 100.0 37 .............................. GCGACGACCGTCCCGGCGCCGTCGGCGAGCTGGAAAG 60827 30 100.0 33 .............................. GGCCTTTTGTCCATGGTGATGGTGCCGACGGGG 60890 30 100.0 34 .............................. CGGCTTCGAGGCCGGCGCCGTGATTGCGTCCCTC 60954 30 100.0 38 .............................. GGCGTACACGGTGAACCGGGCGGTGGCGTGGTGCCCGG 61022 30 100.0 37 .............................. TACCAGCCCGCCGCCGCTGGGATGCCCGCGTCGTGGG 61089 30 100.0 38 .............................. GCGCCGCTCACCTTGGACACGGCGCGGTGGGACGGGCG 61157 30 100.0 35 .............................. ATCCGCCACTCGTCCTGGTAGCCGGGGCGGTCGGC 61222 30 100.0 37 .............................. AGCGGCCTGCCGGGGTCACCGGGGAAGCCCGGCCCGT 61289 30 100.0 40 .............................. CCGGTCTGGTCGCCGCGGGCCGCAAGACCGGGTGGCGCCG 61359 30 100.0 37 .............................. GCGTGAACCTGATGCGCCTGTCGCACCTGACCGGTGT 61426 30 100.0 37 .............................. ATTCCTGCTGCTGCGAGTAGACGGTTCAGGGCGGCGA 61493 30 100.0 37 .............................. ACAAGGCCGCGAAGGGCGAGGACGCCCCGATCAAGGC 61560 30 100.0 38 .............................. CGGATCCCGCCGTCGGCGGCACCGGCCTGGCCGGGGGC 61628 30 100.0 38 .............................. ACCGGGCATGGGTCGAGGAGACGATCCGCGAGCACGGC 61696 30 100.0 36 .............................. TGGTCGTGGATCACCACCCCCCTACTCACCGTTCAC 61762 30 100.0 36 .............................. TTCACTTTCCCCCCTTGCGTCGGGTGGCGCGCAGTG 61828 30 100.0 37 .............................. CCGAACGGTTCGGGCTCCCCTCCCTCGCCCCCGACGC 61895 30 100.0 33 .............................. ATGGCGTCGCAGTACGGCGGCGTGCAGGGCCCG 61958 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 23 30 100.0 37 GTCCTCATCGCCCCTACGAGGGTTCGCAAC # Left flank : CTACCTCGACGCACTCGCGCTCACCCGACGATGCCTCGAAGGAACCCCGTACAAACCGTTCAGGATCTGGTGGTGAAGGACGCGCCGTGCACGTCATCGTGGTCTACGACACCGCAGCCGAACGGAACCCCCGCATCCTGCGGACCTGCCGCAAGTACCTGCACCACGTCCAGCGCAGCGTCTTCGAAGGCCAGGTCAGCGCAGCCCAACTACGACGCTTCCAAGCAGAAGTCGAGACCCTCCTGGACCTCAGCTACGACAACGTCATCGTGTACACCTTCCCGCCCGGGACGACCCCCATCCGGCACGCATGGGGCGCTGCTGAACCAGCCCCGACCGACGTCCTGTAGTCCCACTGCGGTACCCCGAACGCACCGGAGTCGATCAAGGAAATTTCAGCGACACGCCGGGCTCAACTGCACGACCGGAGGGTCGCTGAAGAATCGACCGAAAACGCGCCTCATAAGCCACGTCCCACCTGCAGCTTTACCATGGGGCCG # Right flank : CACGTGGAACGGGATGCCGGGCCGTCCTCCGACCTTGGTCCTCATCGCCTCGTCGGACGTACTCTCTTTATTTGTTGCGCTTGATATATTGGCGGTGGTCGCTTATGGGTGCTGTGGTGGGAATATTGGACACGGAACTGCTGGCGGTGGGCGGAAACTCGGTTGCGGCCAGATATGCTTGATATTGTTCGGTTCCTGCTGTTGCTCGAAGGCTAATTAGGTTTACCTCTTCCTGCACGGGATGGGAGAGGCCGGCCAGATGGTGGATGGCCTGGCTGAGGGTGGTGATGGCTTGGCGGCCGTTGGTTTGAGCTGTGTTGTAGCGGGTTGAGAGTTTGCGGGCTGATGCTGGTACGCGTGGTCGGTGGGTGGGGTATTTCTTCTGGCGGTTGAGGGTGCCGATTGCTGCTGCGTCGTTGATGGCGGCGTGGTGGTGGGTGGCGAGGTTGTTGCAGGCTTCGATGGTTTTGAGGGTGATGGTGGCGATTCTTGCTGCGTGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTACGAGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //