Array 1 125861-125173 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOFI01000010.1 Escherichia coli strain MOD1-EC5195 MOD1-EC5195_10_length_160525_cov_23.1506, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 125860 28 100.0 32 ............................ GCACATTCCCGGCCTCTTGTTTCCCTGGTGGC 125800 28 100.0 32 ............................ GAAAACACCGGCGAGATCGTATTTTTTGCCGC 125740 28 100.0 32 ............................ TCGTCTATATTTTCAAATTCTTCTCGAACCGC 125680 28 100.0 32 ............................ AGGAAGGTGGTAAGAAGCAGATTGCGCTGACC 125620 28 100.0 32 ............................ GTTCAATTATCAAATATCACCCGCGATATGGT 125560 28 100.0 32 ............................ TGAGCACGTCTGCCGCCGGGCGACCAACTGGC 125500 28 100.0 32 ............................ TTTCTGATGTACGGGCAGCCAGCGCGGATCCA 125440 28 100.0 32 ............................ GGTGCGAGCTCCTGCTCTTGTGACTGTGAAAC 125380 28 100.0 33 ............................ CCAGCTGGATGAACAAAGGCGAACCGCAAAAGC 125319 28 100.0 32 ............................ ACGAATGCGCTTACATCCTGGCAAAAGGGCGT 125259 28 100.0 31 ............................ AAAACATGGCGCTGGACCAGACCCGCAAGGT 125200 27 92.9 0 .......................C-... | T [125181] ========== ====== ====== ====== ============================ ================================= ================== 12 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCCTTTTTTGTGTAGGCCATGTCTGGTGCAAAAAAAAGCCCGTACTTTCGTACGAGCTCCTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGATTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTTTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : CTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGCCGGCTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 135607-134917 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOFI01000010.1 Escherichia coli strain MOD1-EC5195 MOD1-EC5195_10_length_160525_cov_23.1506, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 135606 28 100.0 32 ............................ ACCGGGGCTATATTCACCGAACGCCAGCAAAA 135546 28 100.0 32 ............................ GGAAATCTAAAAAAATTTATTGGCGATACAAG 135486 28 100.0 32 ............................ GTGAATCACGGCGCTTATTGCTGGCTGAAATG 135426 28 100.0 32 ............................ AGCTCAACGGTACGCGCCTGCTCGTCAATCGC 135366 28 100.0 32 ............................ AATACGCCCGACTTTTTGTGGCATTTCTGCTG 135306 28 100.0 32 ............................ TCGCCGAGATAACTGCGCACCTCGCGATCTGC 135246 28 100.0 32 ............................ GGCGAGCGGTCGGGGATCCCCTTATATAATTT 135186 28 100.0 32 ............................ GGCGCGCCCACCTCTTCCTCCAGCCCCGGGGC 135126 28 100.0 32 ............................ GGTACGCTCGGAACACAGCGGGCAGCACTAAC 135066 28 100.0 32 ............................ AACTGGCGCGACGTCCGGGGCAAACCTGGTGG 135006 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 134946 28 85.7 0 ....................T...C.CT | C,A [134920,134923] ========== ====== ====== ====== ============================ ================================ ================== 12 28 98.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //