Array 1 329-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWCE01000072.1 Streptococcus oralis strain CCUG 35754 contig_47, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 328 28 100.0 32 ............................ ATACTTTAAACTGATCAGCCGCACCAAGATAA 268 28 100.0 32 ............................ GTTTGTCAAGCTCGTAGAAATTGACTTTAACC 208 28 100.0 32 ............................ AACAAATATTTTTAAATGAATGATCTATCCCC 148 28 100.0 32 ............................ ATGCTTTGTTTTCATTGATATAACAAATGAAT 88 28 100.0 32 ............................ TGTCTATGGCAAGCGTTGGCTCATTGATAATG 28 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 GTTCATGACGGCATACGTCATTTAGAAA # Left flank : GGCATACGTCATTTAGAAATTGGTCGTTTTGTGCAATGAATTTGGCGTCA # Right flank : A # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGACGGCATACGTCATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTCATGACGGCATACGTCATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.50,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 49555-48913 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWCE01000001.1 Streptococcus oralis strain CCUG 35754 contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 49554 28 96.4 33 ...A........................ TGATAAAACTGTAAACAGAACCTTGATAATAGA 49493 28 96.4 33 .......................A.... TGTACCACGAAGCCATAATACTAAAGATGGGTT 49432 28 100.0 33 ............................ TAGTTTCTACTGCCGTTCGGTATTTCTCAGGTA 49371 28 96.4 33 .......T.................... TGCCAAACCTAGACCGAACATAGCTAATCCCAA 49310 28 100.0 34 ............................ CAAATCTTATACGGCTGAATAATTGTGTCATGAT 49248 28 100.0 33 ............................ TATCAAAGTTATTGATATGCTTAATATCTGCCT 49187 28 100.0 33 ............................ TATCAAAGTTATTGATATGCTTAATATCTGCCT 49126 28 100.0 33 ............................ TTCACTTTAGAGGGTGCTAGTGGTTCTCTTGCT 49065 28 92.9 33 .......T................T... TGTAATGTGCCGTTACTTCTGCCACAATAGCAA 49004 28 100.0 33 ............................ TGGCGAACTTCACACAGACCAAGCTTTTAAAAC 48943 28 78.6 0 .......G....T...TA..A.....A. | C,TA [48916,48920] ========== ====== ====== ====== ============================ ================================== ================== 11 28 96.4 33 GTTTTTCCCGCACACGCGGGGGTGATCC # Left flank : ATGAGAATGAACATACCATTATAGAAATTGGGGCACTTAAGGTTACTCCATCCACTACAGAAGAGTTTAATGCTCTTATCAAATATGACGGAATCTTGCCTACGAAGATTTCTAAATTAACGGAAATTTCTCAGGCTCTATTAGAACAAAATGGTCGAGATTTAAAAGAAGCACTTTCCGATTTTTTGCTTTTTATAGGTGAATCAGCTTTAGTTGGCTATGGTATCAATTTTGATGTTAAGTTTATTAACAATGAGCTTAACAAGTTAGGTTTACCTTTATTAACAAATAAAACTCATGATTTAAAGAAATTTGTAAAGAGTGAAAAGCTATTTCTGGCTAACTATCAATTACAGACAGCCCTTAAGGAATATGGAATTGAGGAGGTAGTTCCTCATAGAGCTTTACAGGACGCTAAGTTAATCTACCAGTTATCAATAAAAGTGAATAAATTTTTGGATAGAATCAATCGGGATTAGCGATTTCAATAGGATCTTTTA # Right flank : ATAAAATGAGATATAAGAAAAATATCCCTATTGAAAACTGATAAATTAGAGATAGGAGTGTTTTATTATAGGAAAAAAGCATATTCTGTGTAAATGAAGATATCTTACATAACAAAGGAGAAGACAAGTGAATCGAATGAAGTCATCATGGAGACATTTGGTAACAATAACATCAGTTGGGTAAAAAACTTGTAGAAGAGTATAAGAAAATTTGTCTTGTATCTGTTGCCTTAGAGTGTTTCAGAACTAAATGTTCAACATTTTTTGATTGGAAAAACGAGACTAAAATCCTTCTGCCAAATCCCTAGCTCTCCTAGTAGGTGCTAGTGAGTCTGAAGTTGCTCCACTGGTCGAGTACTTGATTGCAGACAAAAACTTTAACTTAGAGACAGCCCAGCGCTATCTGGAAAATTTACGATCATAAAAAACTCAGACGAATTTGTCTGAGTTTTTTGTACTTATATACTTTTTCCAGGCAATAGGGTGACTGGTAAGAAGTA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //