Array 1 1154-2980 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWX010000309.1 Nodosilinea sp. LEGE 07088 NODE_1078_length_3462_cov_27.5091, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 1154 35 100.0 34 ................................... GTGCAGGGGCCGATGAGGCGCCCATTGACAATTC 1223 35 100.0 33 ................................... CGTAGAATCTGCCCTTCAGAATGGCTCTGCCAC 1291 35 100.0 37 ................................... CTGGTGCAGTGGGTTCCCGACAAGCTACCATCCTCAC 1363 35 100.0 37 ................................... ACGGAGCTAGCCTCGTTTGCAATACTTTGTCCTTATC 1435 35 100.0 37 ................................... GATGGGTGGTGCCCCGTACAACAATGGAAATCGTCAC 1507 35 100.0 37 ................................... GCTCCGTAAAGAGACTTTAACGTAGTTAAACCTGCTA 1579 35 100.0 39 ................................... ACTCGTACGTCACCCCCTCTGGAAATTGGGGTTCAACGA 1653 35 100.0 35 ................................... CTGGGCAGCGCCCATCATCGCGGTTTGCCACGCCT 1723 35 100.0 36 ................................... CGCCGTTAAACCTGTCTCGGTTGTAAGTGACAATAG 1794 35 100.0 39 ................................... CCGTGGACGCACTCGCATCCCGCCGCCCCAGTTATTTGG 1868 35 100.0 36 ................................... TGGGAGCTGTCTCGGAGAGAGGCCCGGTTGATGACT 1939 35 100.0 40 ................................... CCAGAATATCAATGCCAACCGAATTAACTTGCCCTATGGA 2014 35 100.0 39 ................................... ATTTTAAGTTTTAGATGTGTTCCCAGGAAGACCCGAGAA 2088 35 100.0 38 ................................... ATTGATCCCCCTTTATAAACTAATTTGAAATGTACAAA 2161 35 100.0 37 ................................... CACGGTCCCCAGTGAATTAGGGGCTGTCGTATCCAGC 2233 35 100.0 38 ................................... AACGATACTGAAGCCAATGGCGGCTCCAAACAATGACA 2306 35 100.0 36 ................................... GCATTTGAGAGGCATACACTTTGTTGCCATCTGGTG 2377 35 100.0 34 ................................... CTGTAATTGCTAGGTAATTCTCCTCTGCGGAAAA 2446 35 100.0 33 ................................... CTCAATGGGCTTCGGAGCAATGCCTTCACCAGA 2514 35 100.0 39 ................................... CCACGTTTGTGACGAAGTCGATCACAACGATCAAGTAGA 2588 35 100.0 38 ................................... CGCATTAGAATGCTTTTATACGAGCTAAGCGCTGAGAC 2661 35 100.0 37 ................................... TATATGGGTATTCCTCTTCGAGGTACGCCGGCGGGGG 2733 35 100.0 33 ................................... TGGTTGTGCCAAGGACATATGTGATGTCCCAGG 2801 35 100.0 35 ................................... GTGCTGAGCCTGCTTACGGCTCATTTTGTTAACTT 2871 35 100.0 40 ................................... CTGTTACACGGCTCCGAAACAACGACAGCACCAATAACAT 2946 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================== ================== 26 35 100.0 37 CTCAAAACTTCCTCGGAAGTTGAACTAATGGAAAC # Left flank : AGCAAGGAACTCACTATTGGCAGATGTCGGGCAAACGGCTAGAGATGATGCGCGATGTTATCAGAATTCCGGTAACCCGACGCTACCGGCTGCTTTGCCAGGACGATGGCGATCAGATCGTACCGATCAAGGTAATCTCCCATGAGGACTATAATCCTCTTACCAGAGGCCCCAAACGGTTCCTGAGCAGGTTGCTTTCGAGGAAGCCTTAGCCAGAGGGAAACACAAAACCCCATTTTGGAGCACCAGTCGTGATTTTAGGGCTTTTCTCGCCGCCAAATAGAAACGCCTCTCTCAGGCTCTGTTTCTTCTCGGGGTCTGCCGATCGCCAAAACCCGCATTCTCTCGTCGAACCCAGCGGGAGCATTGATATACAAGGCTTTCAGAGGTTTTTCACAGGGCGCTATTGCGAAGAAATATCATTAATGGGCGGGCGGGGTAGACCCCGACGAAAATGGTGGGTTAGAATGCAGGCGTGGCAAGGGTTCTAGAACCCGACC # Right flank : GGCGATTTTTCCCATGGGAAAAATCGCCGTTTCGCGCTCAAGCCCAAATTTGAACGCCCCTGTCAGTGGCCCATCTCCAAAGAGCCCGATGACCTTGTAGCGCTGAGTCCATCCTCACGCTTGTTTAGCAAGTTGGTAGAAGACTCAAAATCTCGCTGCATGACCACTCTGGCTTTTTCAGATAATGGGTTCCCCTTTGCTATCTCCCGAGCCACCTCAGTTATCCGGCTCAAATATCCCTCCGGCCTGCCCAGGGCAGTTGCCGCCCCATGCCACTGCCAAAGCTGCTCTAGCTCCGGGTGGCTCTGTCGCCACGAGTTCCCCATGTCCTCCGGTTGCACCAGCACTTCATTCCAGTCCTTCCCCTGGTTCGGCGTCAGCCGCTCAATTCCCGGTACCTGCTGCGCTACCCGCCAGGCCATCACCTCCCCTGCCACATCCGCATCAAACGCCGCTGCCACCAGCCCCCCACTCCGCAGCAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCAAAACTTCCTCGGAAGTTGAACTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.30,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 7880-3952 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWX010000154.1 Nodosilinea sp. LEGE 07088 NODE_281_length_14673_cov_45.2868, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 7879 35 100.0 34 ................................... TTAGCGGGGCCAATAACATTGCACTGAGATGGGA 7810 35 100.0 34 ................................... TTTGTGAGCCGTTGTTACTGGTGCGATATCGAAT 7741 35 100.0 38 ................................... TCGAAGCCGCTGGTGCTGACGGGCGGCAGGTCAATCAC 7668 35 100.0 34 ................................... GGCTGGCAAGCGTGGCAAGGGACCAAGATACAGC 7599 35 100.0 34 ................................... GCGGATAATCGGGGCGCGATCGCAACCGTACCTC 7530 35 100.0 36 ................................... TTGTTTATCGTCGTGGTGGCAATACGGCCTACGCCA 7459 35 100.0 42 ................................... GTCTACGCTTGGGATAAGGTTCAGCAGATTTGGGCGATCGCA 7382 35 100.0 36 ................................... CCTCAGGGGCCTCTGGTTCACCTAGTCTGTCAGGCC 7311 35 100.0 37 ................................... GCGGTTGAAACAGAACTTGTCGTCCGAATTAACAGCG 7239 35 100.0 35 ................................... CGCTCGTCATGATTTGGAATGCGTCGGGCAGATAT 7169 35 100.0 35 ................................... TATCGGCACTCCGGGAAAATTTTTGGTTAAGACTC 7099 35 100.0 35 ................................... ATGGAAGCCTTTATGAAGGCTTTACAACGTATGAA 7029 35 100.0 36 ................................... CGGGCATTCAGGGCAGCCAGGCGGGCACCAACCTAG 6958 35 100.0 36 ................................... GCATCGGGAACCTGAATTACGGGAATGCCCTCCTGG 6887 35 100.0 34 ................................... TAGGGGCCGCTCCAGTGGGGTTCAGGCTCAAACT 6818 35 100.0 34 ................................... CTGCCACTGTTGCAGCGCTTGCTTGAGTGAGAAA 6749 35 100.0 34 ................................... GATGGGGTTGACTTAAAAAATATACCAGCTTTGA 6680 35 100.0 35 ................................... TCGAGCACCGCTGGCACCAAGGCATTCCCTCCGAC 6610 35 100.0 35 ................................... AGAGCCGCCCCAGCGCTGTCGATATGCCCCTCACC 6540 35 100.0 39 ................................... ATCATCGCCCGGAAGCTGCAAACTTGCTTAACCTAGCGG 6466 35 100.0 37 ................................... CGTGATGTCGGGATGAGTGGCCTGCACTTGCTTGCGG 6394 35 100.0 36 ................................... CTGCGAGCGACTAGGTAGGGCGAAATACCCCGACGA 6323 35 100.0 35 ................................... CCGTACTCTGGAGCCGGGAGGTACCAGAGCGGAAG 6253 35 100.0 35 ................................... CAACACCTTGTCTCGGGCACCAGCATCGCCCCAGC 6183 35 100.0 35 ................................... TCCTGGCTGATGGTAAACACGTTAGGGCGTAGGGG 6113 35 100.0 34 ................................... CCTGAGAACCAAGACGTCGAACTTTTGCTGAGAG 6044 35 100.0 36 ................................... GTCGCAGCGCTTCAATTTCTCTCTCAAGGTTTGCCA 5973 35 100.0 36 ................................... AAAAGCGAGCACCCAAGGGGTAGCGCCCTCTCAAGC 5902 35 100.0 36 ................................... TGTTCAAGGATTTTTATCGTGCAGCTCTCGCGGCAG 5831 35 100.0 36 ................................... TGCGAGGCCATGACAGTTAGGGACAGGGCTAAGCGA 5760 35 100.0 35 ................................... GCTGAGGATTACTTAACAGCCAGCCCTGTCGAAAA 5690 35 100.0 37 ................................... CTGAAACCTTGGTGCGACTTGACGAGATTAGAATCAC 5618 35 100.0 36 ................................... TATATAAGTATGTGTAAGCAATTTGATATTGTTGAA 5547 35 100.0 37 ................................... GAACCCGCCCACTGGCATTGCTCGATGGGTACAGCAA 5475 35 100.0 35 ................................... GTCAGGCCCGTGCGATCGTAGAACCGGCACCCGTA 5405 35 100.0 36 ................................... CCGCGCCAGCACGTTTTACCACGGAAGGTACTGGGT 5334 35 100.0 36 ................................... GTCTGGTTGTTGCCGAGAGCAGGGTCTGCTAGTAAC 5263 35 100.0 37 ................................... CGATCGCGTTTGGCATTTTCGACAATCGACGGCAAAC 5191 35 100.0 35 ................................... GACATCAGCCAGCCTTTCTCAGTGCGTCGAGACTG 5121 35 100.0 37 ................................... ACGAAGTCCATTGCTGCATATACATCGGCAATTTCTT 5049 35 100.0 38 ................................... TGCGGCTGAATTTTGCCAGTACGTTGGGCGCGAGTAAG 4976 35 100.0 35 ................................... CCTGACTACACCTACACCGTGGGCCTACCCGTAGC 4906 35 100.0 34 ................................... GCCGATGCTGCATTGCTCCAGGTCAATCGTGGCA 4837 35 100.0 37 ................................... CCATACGAGGTCGCCTTTTGTCGCCCTGCGATCGCCG 4765 35 100.0 35 ................................... GGGATTGATGCCGGGGGCTGCCAGGGCTGGCCCGG 4695 35 100.0 34 ................................... CTTAAAGGTCTGGGCGGCACCGCCGCTACTGCTG 4626 35 100.0 35 ................................... GACTTCATCAGTTCAGCCGCCTGGGCCGGGCTTTC 4556 35 100.0 35 ................................... AACGGTTGCGGCTGCTAGCCTCAACCCCCAAAGCA 4486 35 100.0 36 ................................... GCGTCATGGGGATGAACAGCATCAAGGCGATCGCCT 4415 35 100.0 35 ................................... TATCCGCTACCGGAACGAAATTGTCAACAGCACTG 4345 35 100.0 35 ................................... TACCCGACCTATAAACTCGATAGCTGGATGTCGGA 4275 35 100.0 37 ................................... CCGACTCGGTGTATTTTGCGCTTGAGTGGCTTTTCTC 4203 35 100.0 33 ................................... GATGTTTACGACCCATTCATGACAGTGCTGCGT 4135 35 97.1 40 ..........G........................ TAAAGCCAGCGGGCAAGAATCGAGTGCGCCGCATTAGGAC 4060 35 100.0 39 ................................... CGATCATCACACGGGGCGATAGTGCATGGGTGACTGCAA 3986 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================== ================== 56 35 99.9 36 ATGCCGAACCTCTGATGCCGTAAGGCGTTGAGCAC # Left flank : GACCCCAGGCGCTGGCGTAAGGCCTACAAGCTGCTGAAGGGTTACGGCGAGAGCATTCAGTTCTCCATCTTTCGCTGTCGGCTGAGTCAGCGCGATCGTGAACAACTCAGATGGAAGCTAGAACAAGTGCTATCTGATGAGGACAGCCTATTAATCGCAGGGCTTTGTAAGCGCTGTGTAGAACGGGTCGAAGCCTGTAACAGGCCCGAAGCCTGGGACGTGGAGCATGATTTACATCAGATTTTTTGATGCAAGGATCTCTAGTTGCTTCTGATTCTTCAGGCTTCTCTCTAGCTGAAAGCCTTGTCCTGTGAAGGGTTGAGGCTTTTTAACTAAGCCTGGAGATGCTTGCGATCTATGAACACCTTGCCCTAAAAGGCTTTGACAGATTGTAATGTCAGCTAAAATAAGGAAAGAGATCGGTTGACCTTTGAAAATGCTTTCTACCTCGCAAAACGTTGTCTGTAATGCTTGTGTAGCAAGGGTTTTAAGGGGCCGCG # Right flank : CATGGGTTAACGATGACGAATGGCTTGAGGCACTCCAAGGTGCATTAGAGGACGACGGGGGTTGCGTAGCGATTATTTGCTCTACGGTGGGACGAGCGCAGGAGGTCTTTGAACGACTGCAAAATTCCCCACACTTTGCCGAGGACGAATTAGGGCTATTTCATGGGCGATTTCTATTCATTGATCGAGAAGAAATTGAAGGCAAGTGCATTGCTCGATTTGGCCAACCTAGCGATGCTAAAACCGATCGCCCTCATCGGTATGTTTTAGTGGCAACTCAGGTCATTGAGCAAAGCTTGGATCTGGACTTTGACTTGATGATTAGCGATTTGGCACCGGTCGATTTGTTACTGCAGCGCTCAGGCCGATTACATCGTCATGAAGATCGCACTAATCGACCAGCCCAGCTGACTGAACCTACCCTATGGTTAATTGCTCCAGAGATTGATGAAAAAGGAAAGACTGACTTTGGAGATTCTGGGTTTATCTATGATCGTCAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGCCGAACCTCTGATGCCGTAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 6598-5314 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWX010000200.1 Nodosilinea sp. LEGE 07088 NODE_415_length_9548_cov_46.8312, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 6597 29 100.0 32 ............................. AAGGTTGAGTCAGTGGCGATGCTCACGTCAGC 6536 29 100.0 34 ............................. TGATACGGCTTGGATCGTCACTGTGGAGCAGATT 6473 29 100.0 34 ............................. AGCTATTAGATGCCTCCATGTGGGCTACCGCCGC 6410 29 100.0 34 ............................. TCATCGAGTTCAAGGGGGTGTCCTAGCAATCTGA 6347 29 100.0 34 ............................. CCAGTTAGTACGGTGTCTCTGGGCATTACCCCAC 6284 29 100.0 33 ............................. GTCGCCAAAACTGTTTCTGGTGACCTTGTATTC 6222 29 100.0 33 ............................. CCAGTTGTGGTATCTCGCACCACGCCAGTTCCC 6160 29 100.0 33 ............................. GCTCTCGCACATGCCTCGGTCGGGATTATTGGC 6098 29 100.0 35 ............................. CCACATCACCATCGGCATCCTCCAGATAGACGCCC 6034 29 100.0 33 ............................. TGTTTGAGAGCGATCGCGCCCTGGCCACAGCTG 5972 29 100.0 33 ............................. TCTCTTTCTCGAATCCTTTCTGTTTCATAGCTC 5910 29 100.0 35 ............................. CAGAACGAACCTGCCCTAACTGTGGGGCGGCGGCC 5846 29 100.0 34 ............................. GCGATCCGTGGCCATAGCGGGCCGATTACGCAGA 5783 29 100.0 34 ............................. ATCTTCGATGCCATCGGCATTGAGATTCACCAGC 5720 29 100.0 34 ............................. TGCTTCACGCCATGCTCGACCCCTCAGCTTTCAC 5657 29 100.0 34 ............................. TCGCTAGCAAACCAGAGATGGGCAGCTCAATCCG 5594 29 100.0 34 ............................. CAGGCTAAGGGGGTGGCATTACTCCAGGGCTTGC 5531 29 100.0 34 ............................. CTCGCCATTCAGCTCTCGCCAGCATTTAGCCTCA 5468 29 100.0 33 ............................. TTATCAATCGCTTCAGACTCCCAAGACAAAACC 5406 29 96.6 35 ............................A GGTCACGTCGGTCGGTAACACCGAGAAATTTACGC 5342 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =================================== ================== 21 29 99.8 34 GTTGTCCCCACGCCTGTGGGGGTGAACCG # Left flank : TGAAACCTATTTCGATTTAGATTCTCTGGTGCGCCGCAAGTGCCGAGAACGTTTTAGCGACTACCGCTTGATGAATCGCTTGGTCAATGACATTGACCAGGTACTGGGCTTTGGTAATGAGAAGGATGAAGAACCCATCGCATTTTTGTGGGATGACGTTTTGGAATGGGTGGAAGGTGGCAAAAACTGGGGTGAGGAGGATCATTAGATGATCGTGCTCATTGTCGAAAATGTAAAACCCTCATTACGAGGTGAGTTGAGCCGGTGGCTATTTGAAATCAAAGCAGGAGTTTTTACAGGCAAAGTATCCGCTTTGGTCAGAGATGAGCTATGGGGTTTGATTGAGCAGCAACTCGGCAAGGGCTCTGCCGTGATGCTCTATCCACAACGTAATGAGCAGGGGTTTGGAGCCCGTATGCTAGGAAATCCGTCGAGGTCCCTGGTAGACATAGAAGGGGTGCTGCTGGTCAGAAGCCCTTAATTTCCGCTATTTTGGAAGT # Right flank : AACTGGGCATGGACGCTGACGAACCGTGGCGAATGAGCAGCAGCTTTGGCAGGATAGGGATGCTCGATGGTTCCATGGCCCCAGGTAAACTCTACGCTATGCCTGACGACATTTTGCCCTTTCTAGCTGCTGTTACTGTCTTGGTGCTGTATCTGTGTTGGTCCGCCGCGACTGAGATGGGCACCCGCTGGCCCTGGCGAAAATAATTTTCCCAATGCCCCCAGATGGTCGGCCCATGCAGATCTGCGATCGCACTTAACCAAGACACTGACCGCAAAAGCCCCCAGCGCGATCGCCAGGGGCTGAAGCGAAATTCCGCTGGGGCTAGAGTAGCAGGCTCCCCTCTGGCTGTGGCTCTCTAGCTCGGCGATGATTAGTATCAAGCTTCAGCAGCGGCCAGGGTCTCAGCCAGTTTTCGCTCACGGGCAAACAGAAACAGCGGAAAGCCAAAACCAAAGGACACCAAGAAGATCGAGGCAATGTATAGGCCCCACAGTTTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTCCCCACGCCTGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCACGCGTGTGGGGGTGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5352-3681 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWX010000258.1 Nodosilinea sp. LEGE 07088 NODE_665_length_6015_cov_25.5299, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 5351 35 100.0 35 ................................... ACAAACAGGTTACTCCTGCTTGTGTGGGGGCAAAA 5281 35 100.0 39 ................................... CGCAACGGTGTAGCCGAAATCATCACAGACCTCGACCAC 5207 35 100.0 32 ................................... CCCAATGAAGATGGTAAAGAACGTACCAAGAA 5140 35 100.0 39 ................................... GATCGAGCTCTCTCAAACCCCAGTCACGGAGTTGAATAA 5066 35 100.0 37 ................................... TACCAGTAGCCTTCGTAGGCACTGATGAACGACCCGA 4994 35 100.0 39 ................................... ACCAGACGAATAGCCTCAGGGCCACTGGGGATGTAACGG 4920 35 100.0 34 ................................... CGTCTTTACAACGGTACATACCCAACGAGTGCTC 4851 35 100.0 36 ................................... GCACCGAGCATCATACTCTGGAACGTGACGATCATC 4780 35 100.0 35 ................................... GGTAGCCACGGATTGGCCAACCACTCACGCTTCTT 4710 35 100.0 38 ................................... GTAGCTCTCCAGCAGCTGCTTCAACTCGTAGTATTCAG 4637 35 100.0 35 ................................... TGTATACTAGGGGAACCCCAATGGGTTCTTGACAT 4567 35 100.0 37 ................................... AGATTGAGGCCACTAACCAGTGGCTTCCGTCCCATAC 4495 35 100.0 35 ................................... CAGAACGAACCAAACTTCATCTTCGAGGTTTTCAT 4425 35 100.0 37 ................................... AAATCAGTTTGGGAATTAGATGCGGTGGCGAGCGCAG 4353 35 100.0 34 ................................... CAGCATCCGCTGCAACAAAGTTCAGAAAGTCTTG 4284 35 100.0 34 ................................... CCGCATTGCAGCTGCAAGGAGGACAGGATAAACG 4215 35 100.0 37 ................................... GTTACAAGCAAGGCGCCTAAGGCTGCCCACTTAGCGA 4143 35 100.0 36 ................................... ATTTCCGGACTGAAGAACAGCCAAGAGATTAGGATC 4072 35 100.0 39 ................................... ACCATAGGCTGCCCAAAAAGTGATCTTTTGCTCAGGAGT 3998 35 100.0 36 ................................... TTGAGCCCTTGCATTACCAAACACCAAACCCAAACC 3927 35 100.0 36 ................................... AGTGGGTTTGTTGGTCTCGCTTACAGGGAATCCTTG 3856 35 100.0 37 ................................... TTTCAGGCCTGAGACGAACTCAGCGTCGGGCTGCGGA 3784 35 100.0 34 ................................... GAGTGGCTGCCGTTAGCAAGAGCGGGGGCACCTA 3715 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================= ================== 24 35 100.0 36 CTCAAAACTTCCTCGGAAGTTGAACTAATGGAAAC # Left flank : GGTTTCTGCCAGCAGGCTAATCAGCAGGTGGTGCACCTCTGGCCACAGGTCAGAGTTTTCTAGATAGGGGTTCATCCCTGGAAACGGCAGCGGCATTCCGGCGGACTCCGTAGCGGCTGCTTTAATTGTACGGTGGGGAAGTGAGGTGGTGGGGTGATAAGGAGGTGGGGTGATGGCGAGTGATAATAAGGGAGCGATCACGGAAACCCTAGCCAACAAGAAACACAAAAACTCATTTTGAAGCATCAGCTATGGTTTCAGGGCTTTTCTCACCGTCAGATGGCAAATTCTCTTTAAAGCTCTGTTTCTTCTCGGGGTCTGTGGATCGCCAAAACCTGCATTCTCTCGTCGAACCCAGCGGGGCCATTGATATACAAGGCTTTCAGGGGTTTTCCACAGGACGTTATTGCGAAAAAATATCATTAGTGGGCGGGTGGGGTAGACCCCGACGAAAATGGTGGGTTAGAATGCAGGCGTGGCAAGGGTTCTAGAACCCAACC # Right flank : ACCAAATTTTGCCGACGGCAAAATTTGGTGTTTCCTACAAGCAATGACAGAAAAATAGGGCCATTAGAGCGCTAAAACTCTGCTTTGTCTTTCATTGGAAAAGTAGGGTGCATAGCGCTCAGGCGCGGCAATGCCAACGTGCAGCGAAGCGGAGCAATGCACCAAAGCTATAAAGAGAGAACGCCACGATCGCAAAGCGGTGTATTGCGGCCCAGCGGGAAAGACCTGGGGCTTTAGCAAAATGGAAATTTAGGCCGCGAATGCACCCTACAAATTGCTATTTCTTCGTTTTTCTGCCTTCTGCCTTCATCCTTCTGGCTTTCCTCAAATCCCCCGCGCCTCCAGCACCAGACTCTCCACCGTCGCATCACGGCCATAGCGCTGCATCACAATATCCAACTGGGGCGACTGTGGCCCCTCCAACTTGCGGGCCGTTTTAATGATGCTGGCCGCATTGCGCAGCCAGCCCAGGCGCAGCAGCTCTGGCAGCATTTGGTCAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCAAAACTTCCTCGGAAGTTGAACTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.10,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 5190-2938 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWX010000075.1 Nodosilinea sp. LEGE 07088 NODE_148_length_25911_cov_41.6904, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 5189 35 100.0 36 ................................... ATTCGCCCTTGATAAAACTTCCATAGGCTCAACAAG 5118 35 100.0 40 ................................... GAGAGGCACACAATCTGCGGCTTTAGCCTCTTCAACGAGC 5043 35 100.0 34 ................................... ACTCTGAACAGCGGGAGGCTAAAGAACCTCCCAT 4974 35 100.0 35 ................................... CGTAACTGCTTTATGGCAGCCGCTAGCGCCAGATT 4904 35 100.0 33 ................................... GCTTTAATAATCCTTAACGTCTCAGCCCAATCC 4836 35 100.0 39 ................................... TCTGCCTCCTTTTTGAGAGCCCGTAATGATCTCCACAGT 4762 35 100.0 35 ................................... ATTCGGTTCGTCCACGTCTGAGAGTAAGTGGCGTA 4692 35 100.0 41 ................................... TCATCGTGTACGGAAGCTTCATCACCATACAATTCTGCATG 4616 35 100.0 36 ................................... TTTCAAGACCCTTCGACCAGCGCTTGGCTTGGCCGC 4545 35 100.0 37 ................................... TAGACTGTGACTTTCAGCGCCCCCTCAACCAAGCCAA 4473 35 100.0 36 ................................... TTACGACCTGCAATCATACCATTGTGCGAGATGTTA 4402 35 100.0 38 ................................... TCGTCACCAAATGTGATAACGATTTCAACCCCATTTAA 4329 35 100.0 35 ................................... GTGGTACTTACTTAATGAAGTAAGCAGTACCACTT 4259 35 100.0 40 ................................... TTCGTGATTGCCATTTAAGGCTGCACGGATAACGCAGATG 4184 35 100.0 39 ................................... GCCGCGGCGGCACCGGATTGGGTGTTGATGTTAGTCACA 4110 35 100.0 42 ................................... TACACACTGCGGCCGACATTGTCGTCGTCGTACCACAAGATG 4033 35 100.0 38 ................................... ACGAAACTCACCGTAAAGATCGAGGTCAGCCTGCTCAT 3960 35 100.0 35 ................................... CAGTGGTGGTCGCCTGGGCATCCATGCAAACCAGC 3890 35 100.0 35 ................................... GTAATTTACTGGGATCACCACCATGCTTAGCAACG 3820 35 100.0 39 ................................... AACGCCGTTGATGGCATCAGCCGCAACGAAGTTCAAGAA 3746 35 100.0 35 ................................... CAGCGTTTCCGCCGCGTAGGCAAATTTCCCAAAAC 3676 35 100.0 34 ................................... CCTGTGCGCGCGCCAACGCAGTATCCCAATCAAC 3607 35 100.0 35 ................................... TCGCTCTGGCCCCAGACACAGCCGTCGTCGCATTC 3537 35 100.0 34 ................................... TTTGGTTACAGAGTGTCCGATGACACTCTTTCCC 3468 35 100.0 39 ................................... TCTTCCGGATCCTCGTCCGTTGGGAACGAGGGCGGAATT 3394 35 100.0 35 ................................... CTTTGCGAACTGATTAGTCCGATCGCTTTGTACAG 3324 35 100.0 37 ................................... TGTATTCAGGTTTTGGCATTGAACTTCAGCGTGCAAC 3252 35 100.0 35 ................................... AATTCTGTGCACCGGAATAGTTATTCTCTTGAGGG 3182 35 100.0 37 ................................... CCTTGGACGTACGGGCAGGCATCGTCAGTGACTTGCG 3110 35 100.0 33 ................................... TTTCAGCACCGAACCGTTCGGTACGAAAACAGT 3042 35 100.0 35 ................................... TGCAGCAGGTCGGCGTGGCCTGCTTGTTCGAGAAT 2972 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================== ================== 32 35 100.0 37 GTTCAAATCTCATTACCCCGCAAGGGGACGGAAAC # Left flank : AAAGCCCAGGTGCCAGAGATTTCTGAACAGCAAAGTCTGCTGAGTCTGGTGGCCCAGCGGCCCAACACCGATGCCTACTACCGGGCGTGGATGCGGGTAGGTGATGTGAATGTGACGATGCGCCTGCGCGACTGGCGACCGATGGGGGAGGTGATTGCACCGCTGGTGGTGCGGCAGCAGATGGTGGCGGAGGCGAGGGAGGAGTTGGGGCGGTATGGGGAGGAGCAGCCAGAAGCTTGAGAAATGATGGAATTTAGTTGATGGATTAGGGATTTACCCGTTAAAATCGCAACAATGGCTCCCGCTTCCTGAGGGGGTCTTCCGATCCTCGAAAACCGCATAGTCTCGTTGACCCCCTCAGATGCCTTTCCGTACAAGGGTTTCAGCCCTGTCTGAAGGTGGGTTATTGACATCAATTCTCAATTATTTGACCCTCTGGCCGACCCCCTCAGATTTGGGGTGTTGAAAGCCTTGCCCCGCAAGGGCTCCAGATCGAGGGG # Right flank : AGAAAGCAAGGATGAAGGCAGAAGGAGGAAGGATGAATGGTTAGCCTGTAAGTAATCCAGATCGGGCGCTTCGCTATCAAAGCCTGGCGTTGCTGATTCCTGGGATGAATCTATTTTCGAAAGTCTAGCTTTGAAAGGGGTCTACAAATCTGTTCATCTTTCATTTCAGCAACGCCCAAAGCCTTTCACTAATGCTGGATATCTCGACTTCAGGTTTTCTGCCTTCTGCCTGCTCCGCACAGGCAAAGCCCTACATCCTGCTTCTGCCTTTTGCTACCGATCGTCGTTCCTGAGGTTCTTTCGCCATGATGAAGGGTGCCGATGGAGATGCATTACTGAGATAATCAGCACAAAATCGTCTTTAACCAGGGTATAAACAATGCCATAGGGGAATTTCCGTAGGCGGCAGCGACGAATTTCTCCGTCGAGCAGCTTCCATGCTTTTGGATTCAAAAGAATTCGTTGAATCGTGCCATCGATTTCATCCAAAAATTCTCGAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAAATCTCATTACCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.74 Confidence: MEDIUM] # Array family : NA // Array 2 23290-23043 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWX010000075.1 Nodosilinea sp. LEGE 07088 NODE_148_length_25911_cov_41.6904, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 23289 35 100.0 36 ................................... GAACGCTTGGGGAGTGGCTGCAGCTACTTCCGCAGA 23218 35 100.0 37 ................................... AAGGCCTGTCGTACTGACAGTAATTTACCCCACTACC 23146 35 100.0 34 ................................... CTTCAACCTGAGTTTCAGGCTTCGTTTGAAACTG 23077 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ===================================== ================== 4 35 100.0 36 GTTCAAATCTCATTACCCCGCAAGGGGACGGAAAC # Left flank : GCAACCCGCCCAGCAGCGCCAAGAAGCCCAGGAATACGCTATTTAGCCGCAAAACAAACTCCAGCTGGCTTTTGAGTAGCTCGACCTCGGGCGATACAGCAGGTGAGGTGGCCTGCGCCAGCAGCGCTAGGGTGAACTCGATCGGGGGAGTGCTCATGGTGGGCAGGGCGGGTAAGGGCTGCCCCAGGATATAGCAAAAGGAGGAAGGCAGAAGGAGGAAGGATGAATAAGAAAAGGTTGAGAAATCATGCCGTCTATTGCACAATCGCCAATCTGCCCGCTAGAATCGCGTCATTGGACTCCGCTTCCTGAGGGGGTCTGCCGAACCTGGAAAACCGCATAGTCTCGTCGACCCCCTCAGATGCCGCTCCGTACAAGGGTTTGAGCCCTGTTGGCAGAGGGCTTGTTGACAAAGATTCTCAATAATTTACCCTTGGATTAGACCCCTTCAGATTTGGGGTGTTGAAAGCCTTGCCCTGTAAGGGTTTCAGATCGAGGGG # Right flank : CCAAAGCAAGGATGAAGGCAGAAGGATGAAGGATGAAAAAGTTTCCTGATGGTCGCCTGGCGGATCGCGTTGATTAGCCCGGCATTCTCAACTTCGCTGATTATCTAAAAGGTGAGCTTTTTGCCTTTCCTCTTCTGCCTTTCTCCTTTCCCAGTAAGGGTTGATCTGGATGTTGCTGATCTTGCTGCGCTCCGCTCCACCCGGTATTTGCCCCAGAGCCTTTCGCCACTTTTCATCCTTCTGCCTTCATCCTTCCTCCTTTAAAGGGGGCACTCTATCTAGCAGAGGCCAAATCGCCCAAAATTTGTGCCCAGTGATTTGAAGCAACGCACCAAAGCCTTTGCTCTACGCATCATTCGCCTGTATTCCGCTCTTCCGAACACCACTGTGGCCCAGGTGCTGGGCAAACAAATCTTGCGTAGTGGCACCTCAGTGGGTGCTCACTATCGGGAAGCCCATCGCGCCAGATCGACCTCCGAGTTTGTCAGCAAGCTCAATGG # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAAATCTCATTACCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 31905-28646 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWX010000051.1 Nodosilinea sp. LEGE 07088 NODE_104_length_33817_cov_32.9503, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 31904 36 100.0 35 .................................... TTAACCCCCGTGGACTTGCCATGAATATTCTTGAT 31833 36 100.0 36 .................................... TGTCAGGGGTCAGGCCGATGCGATCGAATACGTAGC 31761 36 100.0 38 .................................... TTGCGGGCGGCCTCGGTGGGTAATTCTCGGCCCTTTGC 31687 36 100.0 40 .................................... TACTGATGCTGATATCTACGTGGTGGTTGATGGATTTCAC 31611 36 100.0 38 .................................... CGGAGTTGTTTCCTGTGGAGGTGGCCTATACCTACGTG 31537 36 100.0 36 .................................... AAAGCGCCTCAGTGATGATGCCCGGGGCATGATGCG 31465 36 100.0 38 .................................... CTTGATGGGAGCTTAAAGGGTGACGGTATAAGGGTTGG 31391 36 100.0 36 .................................... GTTTAAGCCGAATTTGCTTAATCTGTCCATGGATGG 31319 36 100.0 34 .................................... TTCCTAGCGATATAGAGCCTCTTTTGGCTGGCTA 31249 36 100.0 37 .................................... TTGACGCGCCGCCTAGCGCGAGCTGGTCACCGATGGG 31176 36 100.0 36 .................................... GTTCTAAGGCCTCTATGGAGCTACAAAAACTTCTAG 31104 36 100.0 34 .................................... TTTAAGCTATGGCGCGACGGCACCGTTCTTGTGA 31034 36 100.0 44 .................................... GTATGCGGGACTTACTGAGCGGCGGGGCGATCGCACCGAATGGA 30954 36 100.0 41 .................................... TACCGATATCGTAAGCCTGAGCCAGGCATGATTTATTACCT 30877 36 100.0 38 .................................... ACCAGTCTGTTTAATCGCCAGTTGCAACGGCTGACCAG 30803 36 100.0 37 .................................... GAGTTGAAGGAGGAGCATTGCGCGATCGCCCAGCGTG 30730 36 100.0 35 .................................... GGTGTACGGCTATGGCAAAACAAACGCTGACGTGT 30659 36 100.0 35 .................................... GGTGTACGGCTATGGCAAAACAAACGCTGACGTGT 30588 36 100.0 40 .................................... AGTATCGACAAAGCAACCAAAGGAGGACTTTCTATGTTCA 30512 36 100.0 38 .................................... AAAAAGGAGAACCAAACCATGAGCTGCTGGAATAAAAT 30438 36 100.0 36 .................................... AAAATAGATCGTCGGTTTCGACGCTTGCCGTTACGG 30366 36 100.0 40 .................................... AAGGAGTTCCAGAGGTTTCGGGGGTGTATCAGTCCGTAGT 30290 36 100.0 38 .................................... GGTCAAATATTTCAAGGGGTGAATCTCGTAAAGTTTTG 30216 36 100.0 38 .................................... GAGAAGATCTGGGGACTGGCACTGCTGATAGTGTTGCC 30142 36 100.0 37 .................................... CCTGAGCTTGCCGCGCAGATTAGAGCCAAAGTACTGG 30069 36 100.0 38 .................................... ACATCGGCAAAGGCCCCGTTGGTGGGATTGCTGCGCAG 29995 36 100.0 40 .................................... GCCCCTCTACTCGGTGGAGGACTTAATTGAGATCTCTGGG 29919 36 100.0 37 .................................... AATCAGAGCAACAGAAACAGACGCCACTGGATGATCT 29846 36 100.0 40 .................................... GCCGTCCGAGGCTTTCCCAAGTTCTCGAAGAACTCATCTA 29770 36 100.0 35 .................................... TTGGAACGTACCGTGGCAATCTTCGAGCCTATCTA 29699 36 100.0 39 .................................... AACGCACAGGTGAAGTTGGATATAGAAAATCAGTTGCTA 29624 36 100.0 36 .................................... AAGATGGTGCGCTTCCATTCCCGCTGAATCTCAAAC 29552 36 100.0 37 .................................... AGTAGTGGCAGGGCGGAATGCGCGGCGGCGCTGCTGG 29479 36 100.0 36 .................................... TGAAGAATGGTTGGCGAGTGAACGACGGCGGAAAGA 29407 36 100.0 35 .................................... GCTTTATTTAGGTTCCACGAACTCTTTGCTACGAT 29336 36 100.0 37 .................................... TTTTGCCCCCCCGAGAGGCCTACGCCGCGCTCCCCCA 29263 36 100.0 37 .................................... TTTGCAGAGTTGATCACGGCCCGTGATAACTTCCTGG 29190 36 100.0 35 .................................... TATGCCTATTTCAGGTACTAAAGCTAAGTCTGTAG 29119 36 100.0 36 .................................... CAGGGGTCTTTCAATTTGAATATGAAATCCAGATCT 29047 36 100.0 40 .................................... TAATCATTCTGCGATTCAATTCTCGCAGGCTATGTGTACT 28971 36 100.0 34 .................................... TGAAGAAGAGGAAGAAGCCGTAGAATCAGCCCGA 28901 36 100.0 37 .................................... TACTACAATCAATTCCAAGGCAATGGCTATGCGGCAA 28828 36 100.0 40 .................................... TCAAGTAATCAAAAATGGAACTCCATCAAACATTAATGGA 28752 36 100.0 35 .................................... TTGAGGTAATTGAAAACGAATACGGCATTTACTAT 28681 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 45 36 100.0 37 GTTTCCATTAGTTCGACTTCCGAAGAAGTTGTTGGG # Left flank : TTTGAGTGCATCGACCCGACCCCGCAGACCTAAAGCTTCACTCTCCAGAGTGTATTGCTGCCATTCGTCGCCGCCGTCGCGCTCTAGCTCGGTGTGCAGTCGCAGGCCCGAATAGACCTCGGCATTGGGGGTATGGATGCCCTCAACTTCTTGCAGGTAATACTGGCGCGGACAGTAAAACAACGCTTGCAGAGCGCTGACGTTGATCGCCACCTGGGCGGCGGTATGGGGGATTGTCATAATGCGGGGTTTGCCTATCGGACTATGGGAGATATGAAATCAACCGACGCAGTCTCGATGCACCTGTCTATGAGTTCAGCAATCCCACAATGGCAAAAATAGTTATGAGCGTTTCTACGGGAGTTTGGAAGATCAATACATTCGTATTTCGTTGAAGTTGGCGAGATACAAATGAACTAAAAAGAAGAGGTTAGGCAGTTTTTTCAGGCTTCCTGTTAATGTCCGCAGGAAACGAAAAAATTGCCGACGGCGATTTTTTC # Right flank : AGCGGGCTGCTAGAACCCTTACCCAGCCTAGATCCTAGCACCCCCAATTCAAGGTGGATACAACCAGAGCCAAAAACCAGGGTTTTAATCACAATAAAGCCATGCCAAAAACAGCTCAAACCCTTGTCCTGCAAAGCATTCAAGGTGGATCTCGCAAGGTCACAGGTTACAGCCATCGCTTAAAGGTGCTTGCACAATAGAATACAGACCCGTGGTTCGCAGGCATTACATCCCCTCAGCCTAAACAGACCCAGGTGCTTGCCCCGCCAGTACGTAACGTTATTTTGGCACTTACCAAAGAAAACCTGAAGCTTTTGGGGCTGTAAGTGCGATCGCGCCTAGCTTGGGATAACTTTAGCCAAATTTAGACCATTGCGAATGCCCCATCGCTCTGACAAACTGATCAAATCTCAAACCTTTCCGGAATCGTCAGCATAAAATCTGAAGTCTGTTTGTAGCTGTAGAACAGCCTAATGTCGGTAGGTCAATTGCGACCCCAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTAGTTCGACTTCCGAAGAAGTTGTTGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.10,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 25123-19256 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWX010000076.1 Nodosilinea sp. LEGE 07088 NODE_150_length_25701_cov_38.6318, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== =============================================== ================== 25122 34 100.0 45 .................................. TAGGTCTTGCCGTCGCTGCTGGGGTTGGTGCTGCCATAGGGGTGG 25043 34 100.0 37 .................................. CCAGCAGTGGGCGCTAACGGGCCGCCAGCAGGCCACC 24972 34 100.0 47 .................................. AAGCATCGGTTACTCCACCGCTGGCCCCTGCCGCCGCAGCTGAGGTG 24891 34 100.0 47 .................................. CTGCATTCGCTGACGGCCCAGGGCATTGCCTACTGGGGCCAGCTCTG 24810 34 100.0 34 .................................. TCAGCGTGGGCATCGCTTCAGCCATGCGGGCCAT 24742 34 100.0 33 .................................. TTTAATAGGGTACCTTTTAGGTCTAGAACTCAG 24675 34 100.0 40 .................................. GCCTAGCTTGACCACACTGATCCAAGTCAATGCTCGTTAT 24601 34 100.0 36 .................................. CAATAATCAATGCGTTGGAGCAACACTATGAACAAG 24531 34 100.0 33 .................................. CTTATCTGGAATAGTAGCGGGGTTTACTGTGCT 24464 34 100.0 37 .................................. CTGCCAACTCGCTAGGGTGCGCGGCTTCCAGATGCGG 24393 34 100.0 40 .................................. AATATGCATTGAGCAGCCCCAGCAAAAGACAGTAGGTCTC 24319 34 100.0 39 .................................. TTAACGAAAGTCTGATACTTGAGAGCGGTAAAAGTGGTT 24246 34 100.0 43 .................................. GGCATGGATCTAGCGGTGCGCATTCGACTGATTGACGTGGGAT 24169 34 100.0 41 .................................. GCTTATTTGCCTCATGATCAACCTGGTATCTACAAAAAAGC 24094 34 100.0 45 .................................. GTGATGTCCCGCGACGACGAGGCAATGACAGTAACGGTCAAGATT 24015 34 100.0 40 .................................. CTGGGTCACTGGCCCATGGGTGCGCTATGAGGACGATAAG 23941 34 100.0 38 .................................. GAAAAGGACTGGAGGATTAACCCCATGACCACCCCTAA 23869 34 100.0 44 .................................. ATTCCCCGTCTTGAGCATCCCCATGGTGGCGACCAGCTCATCGA 23791 34 100.0 42 .................................. CCCTAGAGCCCCTAGGGATCCCTATGGCCCCTAGGGATCCAT 23715 34 100.0 47 .................................. TACCAATGCCGACGGGTTGCCGCTGACAAATAACGATGTGCAATCCA 23634 34 100.0 38 .................................. CGGTTTCAGCCCGGCGTGGGCAACCGCTGAACTCGCTA 23562 34 100.0 43 .................................. AGAAGTTGGTCGATGGCATCGTAGTCGCGAGCCAGAGCATACT 23485 34 100.0 41 .................................. CCAAGGGAAGCTGGGTAGAAGTAGGGGACAACTAGCTCAAT 23410 34 100.0 39 .................................. TTCCTTCCGCCAGGTGGGTACAGGAGGAATCTCGGCTAA 23337 34 100.0 40 .................................. CATATTGATTAGTAACAATAAGGGAGCCCTTTTGACCATA 23263 34 100.0 40 .................................. GATATGATTAGGAATAGAGAATGTTACCCAGTGAGCACCA 23189 34 100.0 42 .................................. AGCAATTCGGGTGTTTTGCTCAGAGTCAAGCAAATTTTTCAA 23113 34 100.0 36 .................................. TTTTCCAGTCCTAAAAAGATATTGTTATCGTTAAAA 23043 34 100.0 39 .................................. AGCTATTATCACCCGTTTGGTATGACCATGTTTGATCCT 22970 34 100.0 35 .................................. CCAAGTCACGCTTACGATCAAGTAGTTAGGTATGT 22901 34 100.0 37 .................................. TCCACGGGCTGATTATCTGCGTTGTTGCCCCCGATCT 22830 34 100.0 45 .................................. GCTACGGAAGCGGGCGGGCTTATCAGCGACGCCGATCGCCTCAAA 22751 34 100.0 37 .................................. TCTTTTTCCCGTTTTGCGAATTCCATCCCACTTCTGA 22680 34 100.0 36 .................................. ATGTACGCTTCAACAATTTCATTGGGCGTATGCTGA 22610 34 100.0 38 .................................. ACAGGTCTAAAAGGCGCTGATCGCGTAAGAACTGAACT 22538 34 100.0 39 .................................. ATGATAGAACTCATTCAGATAAGCGTTGTAATAATCATC 22465 34 100.0 37 .................................. TAACAGATTGTTGAACCAGAAAGCCGAAATCAGCACA 22394 34 100.0 38 .................................. CTATCTCCTCGCGATGTTGCTGATAGTACTCCTTTTTC 22322 34 100.0 40 .................................. AATAGGGTGGGGGCTGGCGGCGCGGCTTGCCACTGATGCA 22248 34 100.0 40 .................................. AGGGCCCCAGCCACCGCTACCACTCGTGCCCGCAACCTAG 22174 34 100.0 40 .................................. TACCATAGATTTCCAGTCTATGCCACTACTAAAAGATGTA 22100 34 100.0 40 .................................. ATCGTTTGTCTTCCAGTCGTTGGTAGGGGCGTTTGGGGTT 22026 34 100.0 39 .................................. CCCCCGAGGCCATTCGGCAAGCGGCGGCAGCTCTCTACT 21953 34 100.0 36 .................................. ATCATTTTAATACCTCCACTTTCATACCTCTCATAG 21883 34 100.0 36 .................................. AGCGAACAGTGCAGCATTGGCCGCTGGAACCTCAAA 21813 34 100.0 35 .................................. GGGCATTATGGATCGTGCGTTCAATGGCTTCAAAA 21744 34 100.0 36 .................................. GAATTTACCGGGTAACCAAATGATTTGTACTCCAAA 21674 34 100.0 36 .................................. TTGCCTCGCCGCTAAAATCAATTCCCCCTAGGTTGA 21604 34 100.0 39 .................................. TACAAAAGTTATGGCAGTAAAGAAAGCTTGGGTAGTTGT 21531 34 100.0 40 .................................. AATCTCTAAGAATTTCTCCACTCACACGCATCTCAAGACT 21457 34 100.0 37 .................................. ATTCGTCCTGGTTCCAGGCGAAGTAGAGGCTGTCTTT 21386 34 100.0 35 .................................. AATAGCGCCCCATAACGAATCAGGGATAGCCTCGG 21317 34 100.0 42 .................................. CTGGTCAGCGTGAGCGCGGATGTGCTGGGCGATCGCCCTTAG 21241 34 100.0 43 .................................. GGCCCGACTCTTGCTCTTCTGATATAGCTTGAGCGGTTTGACG 21164 34 100.0 38 .................................. TTTACCCAGGCCACGGCCCAAGCGCTGCAAACTGTAGA 21092 34 100.0 39 .................................. CGCTCTACCGGGGCGCATCCCGTATCGGTATATATCTAA 21019 34 100.0 39 .................................. AGCACATTGCGATCGCGGGGATGCTGATTGGCGTTGGGG 20946 34 100.0 39 .................................. CTTGAAACTTTGAAGCTCAAAACCTCTCTTGTCTCAAGT 20873 34 100.0 33 .................................. CTTTTAGGGAGTTAGATAGGGCAAACAATTTAC 20806 34 100.0 39 .................................. ATTTAGCTTTGACACCGATGACACCTACGGCCCCGCAGA 20733 34 100.0 45 .................................. AGTAATCCACCAGCCCGCTCAGTGTGTGAATATTGATCGCTTCCG 20654 34 100.0 40 .................................. TCGTAACGCCCATCATCGCTCCATGCGTTCATTACCTGGG 20580 34 100.0 40 .................................. TGATTAGGCAATGGCTTGGTGCCCCCATATCCTACGCACT 20506 34 100.0 39 .................................. CATTTTGCGATCCCCCGGTGAAGAAAGTTCTCTGGTCGA 20433 34 100.0 41 .................................. CATGTTGACCATTAATTCTGCCAAGCTCTCGATAGACTCTT 20358 34 100.0 31 .................................. TCTCGGGTGAGTCTTCGGGGCTTATTCTCAC Deletion [20294] 20293 34 100.0 37 .................................. AGCTTCAAGCGCCTGCACAACAAAGCCAACTGACTCA 20222 34 100.0 41 .................................. GCTCTAAATACGGTAGCCTCCGATTCTACCCAGGTATTACA 20147 34 100.0 36 .................................. ACCTGATAGTAGACTAGCTAGAAACGGCCCGCTATT 20077 34 100.0 39 .................................. TTGGAGCATGGTAAAATCAGGCTCACTTTTGGCTCCTAT 20004 34 100.0 43 .................................. AAACGGTATGGGCGTGGACAGATGGGGCGATCGCCCCATCAAC 19927 34 100.0 38 .................................. CAAGTAAAGTAATCTTTCGGCATCATTCTTGCAATTTT 19855 34 100.0 38 .................................. TCCAGAACCCCGGTTGTCAGGTCAACAAATCCTCTGAA 19783 34 100.0 41 .................................. CATGGGACGACTTCAAGCGCTCCATGCTAGGGGCCTTGACT 19708 34 100.0 34 .................................. AACGAATTAGTCGCTCGTCATTGGGGCCAATATC 19640 34 100.0 39 .................................. ATATGCGCCTCAATTTCAAACTGCCCGACCGTGCTTGAT 19567 34 100.0 33 .................................. CATGTGTATGCAAAGAGATACGACAGGGTCGTT 19500 34 100.0 33 .................................. TCTTGAAATTTTTGGGCATCAAAAGACACGTTA 19433 34 100.0 35 .................................. CACTAGAGGGCTAGCAGGTCAGCGATCTTGCCTAC 19364 34 100.0 41 .................................. AGTCATCTCTTTCTTAGTGGCCATTGGGTTGTTCTCCTAGA 19289 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== =============================================== ================== 81 34 100.0 39 CTTTCAAACCACTTCCCCGCAAGGGGACGGAAAC # Left flank : GTCTACGACATTCCCGACAATCGCCGTCGCTACCGGCTCTCGAAACTGCTAGAGGGCCACGGACGGCGGGTGCAGGAGAGTGTGTTTGAGTGTTTTTTGACCCAGGCTGAGATGGAGCGGCTGTATCAGCAAATTGCCGGGCGAATGAACCATGCGGAAGATAATGTCAGAATCTACTGGATTCCGCCAAAGGCGATGGCGAAGACGAAGACGATTGGCAGCGCTAAGCCAGAACCGCCGCCGTCGTCATATATTTATTAATCAAGGCTCGACAGAAGCTGGGCTTGTGAGTAAGGTGGGATGATGAATCCACACAGGTGGTGTGTACCTCGAAAACCTAATAGTTTCGTTTACTTCCGTGGATGGCCTGGCCTGTAAGGGTTTTAGGCTGTTCGTTAGATGCATTTTCGTGGTTTTTGGGGTAAAGTTCCACCAGGGTTTGCACCTCCGTGGTTTTGCCCCTCTAGAAACGGCTCTGGGTAAGGCTTCTAGAGCAGGGG # Right flank : CTTAATCAAGGCAGAAGGTAGAAGGCAGAAGGATGAAAGGGGTGCTTGTGGGCGACCTAGTAGAGCACAGGGTTCTCGCCAAAGAGAGTCCATTCCTTGCAAGGGGAACGCCGCTAAGATCGTTGGTTGATTCGCTAAGATGACAGACAAGCAAGCATCTTCACCATTGTGCTATGCAGACCATTGCTGACCTACCGCTAAAAGCCCGCGATCGCCAGGCTATTGATGCTGCCGTGACCCTGCTGCATAGCCAATTCCCAGTCGAAAAAGTCATCCTCTACGGGTCTAAGGCCTCTGGCCAGGATACAGACGAGTCAGATATAGACTTACTAGTGCTCACCCAGCATCCCCTACATTGGCAAGAGCGCAACGCCATCACCGATGCCCTCTTTGATATTGAGCTAACCTACGATGTTGTCATCAGCACCCTGGTAGTCGCTCAAACAGACTGGCTGACAGGCCACTACACGCTACTCCCCATTCATCACGAAATCGCGCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAAACCACTTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA //