Array 1 220751-221771 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QXTX01000003.1 Staphylococcus simulans strain SNUC 1347 contig003, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    220751	    36	 100.0	    29	....................................	ACATCGGCACAACTTGATCTAGTGCGTAC 	
    220816	    36	 100.0	    30	....................................	GATGATTTCTTCAACACAATTAAGAATGGA	
    220882	    36	 100.0	    30	....................................	ATGTTGTAACCGCGCTCATCTTCCGTAATA	
    220948	    36	 100.0	    30	....................................	ATACGTCACAACCATTCACAGATGATTCGG	
    221014	    36	 100.0	    30	....................................	ATACGTCACAACCATTCACAGATGATTCGG	
    221080	    36	 100.0	    30	....................................	ATACGTCACAACCATTCACAGATGATTCGG	
    221146	    36	 100.0	    30	....................................	ACCTCTCTGAAACAGTAAATACTCACACAT	
    221212	    36	 100.0	    29	....................................	GCAGTTGATACCTGTATCAAAAGCGACTA 	
    221277	    36	 100.0	    29	....................................	CACAGCTAAAGGTTCAATCGCATTTGTAC 	
    221342	    36	 100.0	    30	....................................	TTAAACGGAAATCATCTGACAATTAATGGA	
    221408	    36	 100.0	    30	....................................	ATCGATGACGCGACCGCGAAGATGAATGCA	
    221474	    36	 100.0	    30	....................................	GTATCTGCTAAATCTAGTCGACCTTCCCAA	
    221540	    36	 100.0	    30	....................................	CATTGAGATGAACAGGAGGAACTGGAATGG	
    221606	    36	 100.0	    29	....................................	TATTTCACGATTAGAAAAGGAGAGTTAAA 	
    221671	    36	 100.0	    29	....................................	CTTATACACTGCTAAACAATTTGCTTACG 	
    221736	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        16	    36	 100.0	    30	GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	                              	       

# Left flank :   ATTATCAAGCAAAAGAAAAGGCGTTTTTGATTTATCTGTATCCAGAAGCGGGTTTAAGTATAAAAGAGCAAATTAGATTTAGAAAAACATTAAATGATCTGCCAATTCCAATAATAGTATTAACAGAGTCCTCATATTTTTTATCAGAGAATATCAAAGGTTTGAACTACTTTATCAACAATATCCAAATGATTACTGAAGAGTTTATTGATGATAGTTACTGGAATGCGCCAATTAATATAGAAATAGAAAAGTTTAAAGAGAGATTTGAGTATTTGTTTAAAAACTATTGTTCTTTTCTAGAAGTTAATCCTACAATTTCTAATTATAATTTGACGGAAATTGTTGTTTTCGATGATTTGGATCTTTATATAGTCATAGCTTTTTTAAAACATTGCAAATTTAACTATCACCTAGACATTGATAAGGAGAAAATTTCTTCAGCATTATCGGCGTATCTATTTTCTTAACCAAAATTCAAGTTTATAATTGTGCTAGAG
# Right flank :  CTTTTGCTTTTTGCATTCAAGCGTAGCGAATGTTTTAGTACTCTGTAATTTTTAAGCAGCTTCGGCTGCTTTTTTCTATTTTCTGTCATTGACATACTTTAATGATAGGCATACAATAATTCTGAAAATTACGAAAACATCAGGTCTTTTGCATCACGAGAGGAGTCTTTTTATGGAACACACAGCGATGGATCATACTTCACCCACACATCCAGGGACTAAGATAGGTCCCAAATATTTTCTTTTTAACTTATTAAATGGGGTTGCGATTGGTATCGTAGCAGGTTTAATCCCGAATGCGATTTTAGGAGAAATCTTAAAAGCACTTGTCCCATTCAATCCAGTCTTTACTCAATTACTACACGTTACGACGGCTATTCAATTTGCGGTGCCTTGTTTAATCGGTGCGTTAGTTGCGTATCGTTTTAAATTTACCCCTTTAGGTATCGCGGTAGTTTCAGCGGCTTCCTTTATCGGTAGTGGTGCTGTCGTCTTTAAAC

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:72.22%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-3.60,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.87,0   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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