Array 1 226619-224512 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDQL01000005.1 Salmonella enterica subsp. enterica serovar Braenderup strain 107 NODE_5_length_249165_cov_11.0315, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 226618 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 226557 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 226496 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 226435 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 226373 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 226312 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 226251 29 100.0 32 ............................. GGGCTATATCCACGCCAAAGGGCCGCGCGACA 226190 29 100.0 32 ............................. CTAGGCACTAACTCGCAGTATCACTCCCTGCC 226129 29 100.0 32 ............................. GTCATCGCCGGTGAGGTATTTTTTTGGCTTAG 226068 29 100.0 32 ............................. GATAGCGCGGAAATTGCCGAGGTTATAGCTAA 226007 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 225946 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 225885 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 225824 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 225763 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 225702 29 100.0 33 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTGC 225640 29 100.0 32 ............................. TGCGATCTAATCTCCTCTGGCGTGACTGTACG 225579 29 100.0 33 ............................. TTGCCAGCCGAGGCCGTTACCGTTCGCCAGAAC 225517 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 225456 29 96.6 32 ............................T TTACGCAATATTAACAGACCAGGGAGCAGCGC 225395 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 225334 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 225273 29 100.0 32 ............................. TCATCGAGTACGGAAAATCCGTTTTTATTGTA 225212 29 96.6 32 .............C............... CTACGAAGGCGTCTTTATGGCGCACAGTACCA 225151 29 96.6 32 .............C............... CCGTCCAGCTCCACATGCTCGCCAATCTCCTG 225090 29 96.6 32 .............C............... GTTGGCAGCATGATCGCTAAATCTAAAATGCC 225029 29 96.6 32 .............C............... TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 224968 29 96.6 32 .............C............... CCTGGCAAATTATTTCCTGGATACTCGATATC 224907 29 96.6 32 .............C............... GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 224846 29 96.6 32 .............C............... GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 224785 29 96.6 32 .............C............... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 224724 29 96.6 32 .............C............... GGGATTATGTCCTCTAAAGACTGGCTAATCAC 224663 29 93.1 32 .............C...........G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 224602 29 96.6 32 ..C.......................... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 224541 29 89.7 0 A...........TC............... | A [224514] ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 243881-242877 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDQL01000005.1 Salmonella enterica subsp. enterica serovar Braenderup strain 107 NODE_5_length_249165_cov_11.0315, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 243880 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 243819 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 243758 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 243697 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 243636 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 243575 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 243514 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 243453 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 243392 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 243331 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 243270 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 243209 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 243148 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 243087 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 243026 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 242965 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 242904 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 97.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //