Array 1 53585-54833 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOGT01000026.1 Escherichia coli strain 474 BN4_474_1_(paired)_contig_26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 53585 29 100.0 32 ............................. AGATCACACTTACCCTGCAAAATCTTAATGGG 53646 29 100.0 32 ............................. ACAATCACATATACGACGCGAGACGGAGATCG 53707 29 100.0 32 ............................. CTACCGGGACCGTTGGTTTCCACCATGACCAG 53768 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 53829 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 53890 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 53951 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 54012 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 54073 29 100.0 32 ............................. CCAAAATCCCCTAGGAATCCCAGCACGGTGCG 54134 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 54195 29 100.0 32 ............................. TCTTCAACGGTTTTGATTTCAAGTTTTTTGAG 54256 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 54317 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 54378 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 54439 29 96.6 32 ..A.......................... AAAAAACAGTGGTACTACCGCCCCGCCGAACA 54500 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 54561 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 54622 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 54683 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 54744 29 96.6 32 .A........................... GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 54805 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 80533-82330 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOGT01000026.1 Escherichia coli strain 474 BN4_474_1_(paired)_contig_26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 80533 29 96.6 32 ............C................ GTCAACTGGCACCACAAAATGATGGCGTCGAA 80594 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 80655 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 80716 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 80777 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 80838 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 80899 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 80960 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 81021 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 81082 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 81143 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 81204 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 81265 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 81326 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 81387 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 81448 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 81509 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 81570 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 81631 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 81692 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 81753 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 81814 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 81875 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 81936 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 81997 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 82058 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 82119 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 82180 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 82241 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 82302 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 30 29 98.5 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //