Array 1 546979-546401 **** Predicted by CRISPRDetect 2.4 *** >NZ_FO704551.1 Xenorhabdus poinarii G6 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 546978 29 100.0 32 ............................. TGAGTAAAATTAATTTCGGATATGCGTTATAA 546917 29 100.0 32 ............................. TGAGTAAAATTAATTTCGGATATGCGTTATAA 546856 29 100.0 32 ............................. CAAATGTGCAAATCCCTGTCGCTGGTCAAGAA 546795 29 100.0 32 ............................. ATAGGGTGGCGTTTCTCGTCCAGCCCGAGGAA 546734 29 100.0 32 ............................. GAAGAACGTAGGCATGAAATGGACAGATCGAT 546673 29 100.0 32 ............................. TATGTGCTCAGCAAAAAAGACGCGACCGACGG 546612 29 100.0 32 ............................. GCGGCAGCATGATTAGATTATCAGCGACCAAT 546551 29 100.0 32 ............................. TTTCCGTACTTATTCAGCTTAACGTTTTTAGG 546490 29 100.0 32 ............................. CAACCAATTCTGGCTGGTGATTAGATTTGGTA 546429 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 100.0 32 GTGTTCCCCGTAAGCACGGGGATAAACCG # Left flank : CTGGTCGAGTTGGAAAGAATATCCGGCACACGATTGGGAATATAACCAAGTTGCTCCACCGCTTCCTCGATTCGTTTTCCCAATGCCTCAGAAACCTGATCCGGTTTACGTAAAAAACGGCTGACCGTCATTTTGGTGATCCCTACCAGGTCGGCAACATCCTGTAGAGATGGGCGTTTTTTTTTCATTTTAAATGCAATCAGTGATTAATAGGTGCAGATGAGTAGCTTGCGGTTTTAACACATTTATATAACATAAAAAGCCGCATAAGGCGCGGTCAGAATTTGAGTCGCTGCTATTTCTTCAGCATCAACGTCGCATTGACCACGATATTCGCCATAAAAAAGATGAGATTCAGGGAAATGGATAAAATGCGATCGGTAATACAAACCATAATTAGGGAAAAATAACCGCAATAATTTGACTAATTTATAAGCAAAAAAAGTGGTAGAATTTTTACCCCTTAAAAATTCATTACAAAACAGATAGATAAAATTAGA # Right flank : AACTAGTACTACAGCCGTAATCCATATTGTGCCATGATGGGGTTCTTCTTCCTCGAATCAAAGGTGGTGTCACATGCCATCCCCTGCCAAAATCTGGGAACAGGCGCTACAGGCATTACATGCCCGTCTGGCTCCCTTATTTCACTCTACCGGCCCGCGACAACGCAGCCTCGCCTATCTTCGGGGATTGCTCAGTGATGTTGAACGTAAGAATAGCTGGCAACTGGCTGAATGGATGGGGGAAAGTTCCCCCGATGGCATTCAATATTTGCTGGAACGCGCTGACTGGGATGTCGAGATGGCCCGCGATATCCTGCGGGATTATGTCACCGAACATTTGGGCGATGAACAGGGAGTTCTTATCCTTGATGAAACCGGTTTTATCAAAAAAGGGACCCATTCTGCCGGGGTACAGCGTCAGTATAGTGGGACCGCTGGACGGGTAGAAAACAGCCAGATAGGCGTCTTTCTATGTTACGCCGGCCACGGCGGGCATGCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTAAGCACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTAAGCACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 750184-749729 **** Predicted by CRISPRDetect 2.4 *** >NZ_FO704551.1 Xenorhabdus poinarii G6 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 750183 29 100.0 32 ............................. AGTGAAGACAGCTATGAGTGGTTTTTTACTTC 750122 29 100.0 32 ............................. TGCTCCTTGTAAGGCACTACCTGTTCCGGACA 750061 29 100.0 32 ............................. TCCGTTATCGCTATTTTTTTCAGGACGGTTTC 750000 29 100.0 32 ............................. GGCGGCGGGCTGAACGCAAACGCGCGGCGGCT 749939 29 100.0 32 ............................. AACAAACACTGATTGAGTATTATCGTGCTATG 749878 29 100.0 32 ............................. AAGGTTACTCAGACATTTTGATAACAGGAAGA 749817 29 93.1 31 ............CA............... GAATAAAATGTTTAATAATATTAAAAATAAA 749757 29 82.8 0 G......T.....AC..A........... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.0 32 CTGTTCCCCATATGTATGGGGATAAACCG # Left flank : TAACGGCTTAGGGACGATGCCTTGAGCTGCACGCTCGGCTACGTGCTTACGGTATTCTTCTAGCACGACTTTCTCCTCGCTCTCATTGTCATTTTATATACCCGGCTGTCTGCACCCGGTAACGATCATTGAAAACAGTCATCCAAAAACAATCATCAGGGGTGCCAGGTCAGAGGATTTTGCTCGCATAATATGAAAATTATGCCTAGCTTCGGGCACATAGCATACCAAAATTTGAATGGCATGTTAATTCATTCACATAAAATCAACATTGAACGTTGATAAAATGCTAGGTAAAGGCACATAAAGAGTGTATTAAAAGGATTAAAAATGTTTCGTGCCGGGAATTTCGGTAGATTGGAAAGGCGTCCGTTTTGTATTTTTTAACCTATTGAAAAACATATCTTTTTATTTTTGAAAAAATGGTATTTTTAAGTAAAAAACGTGGTAGAATTTTTTCCATCAAAAAAGTTATTAAAAAACATAAAGATATAATTAGT # Right flank : ATTGATAACGAATATAAATTAATATTACAAAAGCTATATAATCTCTTCCCAATTTACCACAGGAATCAAATATCGATAAAAGCGCCAAAGGATAACAATATTTTCTTTAAGAGGATTATCGTACTACTAACCGTTACATCCTGTTATCAGTCAAAAATCACTTTAATATCTTGTTGACATCCTTGAATCAAAAGAGTAAGTTTCTGTGAAGATCAAAAGACGTAGTTTTAAACAAATTTATGTTGTTCCTTACAGTGATAGTAAAGTAAATTAGTTAGCTTTTATTATTTAATTTATAGGTCCATAATTTTGATTAGTAATATAAAGAATATATTAATCGCTATCCTCAGCGGTTTCTTTCTTACCTTAATGTTTCAAGCTAATAGCGCACTGTCTGAAAAAACTTCCCCTGTCGTCGCTTCATGGGTAGCACACGGTACTGGTGTATTATGTTCTTTATTGCTTATTCAATTATTCGTCAAGAAAGCACCGAAAAAACT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCATATGTATGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched CTGTTCCCCATATGTATGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.30,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 787642-788829 **** Predicted by CRISPRDetect 2.4 *** >NZ_FO704551.1 Xenorhabdus poinarii G6 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 787642 29 100.0 32 ............................. AATGGCAGCTTCTTGTCTGGGAACCCATTCAG 787703 29 100.0 32 ............................. TTTGGGAAAAAGCCCCTATATCTATAGCTGGA 787764 29 100.0 32 ............................. AATTGAAATTCCATGTTGTCCAGAATGCGGTC 787825 29 96.6 32 ............................A GGTGCGCGATATTCGTGACCAGTTATCTATTC 787886 29 100.0 32 ............................. AACTCCCGGCAGGCACTGAAATCGCTGATCGC 787947 29 100.0 32 ............................. AGGAAGAAGAGGAAAGCAAAAAAGGGAAAAAA 788008 29 100.0 32 ............................. GCTGACGCCATCTTGCCATGATCGTGACTACC 788069 29 100.0 32 ............................. TCGTTTTATGTGCATTCCATCCCCATATGTAA 788130 29 100.0 32 ............................. GCTCCATGCTTTTAATTTGGAGGCCGTTTATT 788191 29 100.0 32 ............................. CGCTTTTTGCAATCGCTAATGAGTCCACCGCA 788252 29 100.0 32 ............................. CTTGGAATAGGAGAGCAACTCAGCGCAAATAA 788313 29 100.0 32 ............................. CATTTTTCGTTTACCCATATCGAACTGGGTTC 788374 29 100.0 32 ............................. TGTTCCGATGTCTGAGGTGCCTGGTGTTCGTC 788435 29 100.0 32 ............................. ACATTCTTTACCTCTTTTATCGTTGATATTCC 788496 29 100.0 32 ............................. CTGATATGTCCGTTTTTGTCAAAATGCACTAA 788557 29 100.0 32 ............................. TGTGAGAGGCTTTACAAATACGCAAAACCCCT 788618 29 100.0 32 ............................. TTCGTGTGCGTGCAATAAATGCGTCTGAAATT 788679 29 100.0 32 ............................. AGGGCTCAAATGGTATGAGTCGCACCGTGAGT 788740 29 100.0 32 ............................. TTCGTGTGCGTGCAATAAATGCGTCTGAAATT 788801 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.7 32 GTGTTCCCCATATGCATGGGGATAAACCG # Left flank : TGCCTCATTTTGAAACGGAAGCATACCTGAATCATGTAGGAAGCAATTAAAATCAATATGTTACAAGTATTTGGATTTCTCTTTTACTATGTTGAGTTTTATCAATTATCTGATAAATTTATTAATTCCTTGTCTGTTATTTTATGCCATCCTGCTATCAAAATATGCCATTCAGATTAAATTCAAAATGCATTCTCCTGTATTGATTAAATAAGGGAATAAACATGCAAGATAAAAAATTGAGGCACCGGTATTAGACGATAACAACCTTGTGATCGCCACAACACTAAGAATATGTCAAAGATTCAATCAAAGAAGTCAAAGATTAAAAATGTATCATGTCGGGAATTCGGTAGATTGGAAGGGCGTACGTTTTGTATTTTCTAACCAATTGAAAAACATATCTTTTTATTTTTGAAAAAATAGTATTTTTAAGTAAAAAACGTGGTAGAATTTTTTACATAAAAAAAGTTTTTAGAAAACATAAAGATATAATTAGT # Right flank : GCGGTACACCGCATGGCGATATCTAAATACATGCGTGTTCCGAACCCTCTGCCTACAAAGCTAACCACAGCCGCGCTTACAATATCGCTGAGGCGGGTGGTTTAGTCACAGGCATCCAAGACGCTTTTGTTCCGCGTGACAAATTGGAGCGCCTGACCAATACCAAAACGTTTGGCGCAGCTTACGTGCTGTCAGGTTACACATCCCCTCAGCTTGGGATGACCAATTGGCAAGGCGGTTTGGTCAACCTTGCGAACTGGGTTATCGGCCACAAGAAGCACGGTGCTCGCAATAGTCTTATTGCGTGGATGCCTGCAAAAGAAGCTGTTTCACCGACTGATGCTCAGGCCAAACTTCTTTCACATGTGAAAGTTTCCGTAGAGTCAGCACTGTCAGGTTTAGGTGCGGATTTCACACTGCTCTATGACAAAGATGGTGAGCTAACTTACCAATTTTACAAAAGCGATTGGGGTTGCCCTATGTGGGTGAATGGACAAAGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCATATGCATGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCATATGCATGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 1122821-1123215 **** Predicted by CRISPRDetect 2.4 *** >NZ_FO704551.1 Xenorhabdus poinarii G6 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1122821 29 100.0 32 ............................. GCTATTCAGCAAATGAAAACTATTCAAAAAAA 1122882 29 100.0 32 ............................. TGGACGGTTACCCGTCGGGCGGTGCCGGTGCG 1122943 29 100.0 32 ............................. CCAGCACGGGTGATAGTTGCAGTGGTCACAAC 1123004 29 100.0 32 ............................. TTAGAAGATGCGATTAATGCAATAAAAGAGGA 1123065 29 100.0 32 ............................. GACGCTCATGAGCTGAGTAGTCCGGCAGCTAA 1123126 29 100.0 32 ............................. TACAAATGCATAGCGCGTTTTCGTGGGTCAAC 1123187 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 GTGTTCCCCATATGCATGGGGATAAACCG # Left flank : TTTTTCCAATTTCAAAATGAAAAATGCTTTCAGATTTTGTCTTGGTAATATACCGAGCTTTTTTAATTTCAGAGAATCTGTTTTTATCATCGTTGCAAGGCCTTCATGTTGTATCTCTACGCGTTCGGTAAACACATGAGAATTTATTTTCGATTAAGGACATCAAAGGTTATCTCAGCCAGAAACTGGTGGACGGTTTGACCCAAACCGATGTTACTTTCATCACGACAAAGCGCCATAAGATGAGAACGCACATGCTGGTTTATCTCTATAACATCGTGTTACTAAAAGCGTTTCACCATCAAGACAATGAATAAGCAATTAAAAATAATCTTTCAAGTAACGCATTCTCGCCACCGAAGTATAAAAGGATTAAAAATGTTTCGTGCCGGGAATTTCGGTAGATTGGAAGAGCGTACGTTTTGTATTTTTAAGTGAAAAACGTGGTAGAATTTTTTACATCAAAAAAGTTTTTAAAAAAACATAAAGATATAATTAGT # Right flank : GTTACCATAAAACCATATGAAGTATTGTCTATCCCTACTTTGTGGGGATAGACACCTCACATCTTGAAGTTGGGTTAGTATAGAGATAAAAATGAATATTAAAAAATAATAAACTATTGAGATCAAAAAAGGTTATCAAATGATAACTTTTTTTGATTAGTTTTTTATTTTTTTATGATTATGCTGGGGATCTGAGTTGAGATGATTATATGGTAGTCAATGTTAAAATTGTTTTTTATATTAAGTTTATTTTCAAAACTATTTCTGGAGTGAATTTTTTTTAATGTAATGTGATTAATTATAATATATTAATAATAATACGAGGTGATAAAATGGCAGCTATTACTAGCACGAAAATTTCACCACTGGCTAATAAATTAGAGGTGGGTCACAAAGTGACATTTTCAGTAAAATTAACATCGAATAAACCTATTGATAATAACAAGTATATAATAGTAGAAAATGGCTACATTCAAAATATAAAATTTGATAACTTAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCATATGCATGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCATATGCATGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 2345392-2345604 **** Predicted by CRISPRDetect 2.4 *** >NZ_FO704551.1 Xenorhabdus poinarii G6 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 2345392 30 100.0 31 .............................. CCAATCAAACCTTTATTTATCAATCGATTTT 2345453 30 100.0 31 .............................. CAAATCAACAACTCGTACATTAGAACTAGTG 2345514 30 100.0 31 .............................. GCAGCATTATGGCTAAAATCTCAATCAAAAA 2345575 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =============================== ================== 4 30 100.0 31 CGGCCTATCCCCGCTCGCATGGGCAACACA # Left flank : GCCAGTTGGCGTCTGACGAACGGTAGCGCGTTTAATTTTTCCCTCGAACGGGCGAAAACCACGGCAGCAAACCCAACCCGCTTTGGGTAATTTTAATGCCCGATCGGTTAATTGGATGCTAGCTGCAGCTGTCGCCGTATATGTCGCATCACCACGGTGTTTCGATTTGAATCTTGGGAATCCGGGGGTTTCACCATGTTTAACACGACGGAAAAAATTTTTGTACGCGGTGTCCACACAGGTGCATGCATATTTTAGCGCCTGGCTGTCCGCATCCACCAACCACAGGTATTCATTTTTCAACAATGTCATACGTTTCATTAAATCGTATGCCGATGAGCGTTTTTCACCTGCCTCATATTGTTGTTGGCAGAACGCCAACGCGTTATTGAAAACCCAACGGCAGCACCCGAAGGTTTTCGCGAAAAATTCGCGTTGTTCTGCATTTGGATATAAACGAACTCGTATTGCATATAACATTAAAATTCCCCCTAAAATAC # Right flank : ACTAACGAATTTTAGTAGATAAATCATATTGTTAAATACACCTAAAAAATCCACCAAAGTTTTGCAGCAATTTCCCTTTTCAACCACCGCCTTTCGCGATGTCCCAGGGCGTTAATTCGGGTCGGCCTAACCCTATTTATAGACAGGATATTAAGTAATAACTCTCTATTTCAGATAGAAAAAAGTCTTCATTTATGATCTGATAATTGTGACTAATAACAGATTAAAATCACCGAATAAAGCCGGTGATGATTATCACTATAAAACACCCGATGGTGCAATTATTTAGTGGCTATTATTTGGAATCTATTGACTCTCAGCATCCATTGATTAAATACGTGAGAGATATTAAGAAAATACACCACATCCTCATTGAAAATTTGCTAAACATTACGATTTGGATATAACTCTGAATTATGTAGACCATACAATCTGATATAAACCAAGCAGGCCAAATTTCTATTTTATTTTCATACCAATCTTATGATCTGAAAGAGTCA # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGGCCTATCCCCGCTCGCATGGGCAACACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.40,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA //