Array 1 317437-319478 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZEC010000066.1 Salmonella enterica isolate 2385_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 317437 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 317498 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 317559 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 317620 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 317681 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 317742 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 317803 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 317864 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 317925 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 317986 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 318047 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 318108 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 318169 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 318230 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 318291 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 318352 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 318413 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 318474 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 318535 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 318596 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 318657 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 318718 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 318779 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 318840 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 318901 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 318963 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 319024 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 319085 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 319146 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 319207 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 319268 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 319329 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 319390 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 319451 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 335611-336781 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZEC010000066.1 Salmonella enterica isolate 2385_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 335611 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 335672 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 335733 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 335794 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 335855 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 335916 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 335977 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 336038 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 336100 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 336203 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 336264 29 96.6 32 .........C................... TTCTTGAATATGATTGCGGGTATATGTGGATA 336325 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 336386 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 336447 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 336508 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 336569 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 336630 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 336691 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 336752 29 96.6 0 A............................ | A [336778] ========== ====== ====== ====== ============================= ========================================================================== ================== 19 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //