Array 1 667-4705 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNOF01000202.1 Xanthomonas oryzae pv. oryzae strain PX061 scaffold201, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 667 31 100.0 34 ............................... ACCCACAGTCAGCAATATTGCCTGCTCAACAGTC 732 31 100.0 33 ............................... ATGGGTGCCTGCCTGTGCCAGTATGTATGCATG 796 31 100.0 35 ............................... GGTTGCCAGTGAGGTCTCGCAGATGATCCCTCAAC 862 31 100.0 34 ............................... CAGCTTAGCGGTAATATCAGTCATTTTATTGGTG 927 31 100.0 36 ............................... GACCAACAAATTGCCAAGGCTGATATCAGACGCAAC 994 31 100.0 34 ............................... CCAGCAGGACTTGACCGCATGGTCTTTGCAGCTG 1059 31 100.0 37 ............................... CAATCAGATGCTTGAGCAGTACCCAACCCGTCTTAAC 1127 31 100.0 35 ............................... TTGGTCTTAAGCCCAAACGGCACAGCATTGTGACC 1193 31 100.0 35 ............................... AGGCTGTCGGTGACATTGGCCAGGGTGGCTTCCAG 1259 31 100.0 33 ............................... CAAGTGTCCTTACAACGGTGAGGGCTGTGTCTG 1323 31 100.0 34 ............................... TCCTTGCGGTATTTGTAAATGAACTCCTGCACCC 1388 31 100.0 36 ............................... ACGTTGTCCAGCATGTCAAAGACCACCAGGCCGGCA 1455 31 100.0 35 ............................... TCGCTCACGGACACGGAGTCATTAAACGTCATAAA 1521 31 100.0 35 ............................... TACCTGTGGCGCGTGCGTATCACCGACCGCGACGG 1587 31 100.0 35 ............................... AACACAGTTAGGCACATATGCCAGTATCTTGACCA 1653 31 100.0 34 ............................... ATGACGGCCAACAAGGTGCGTCGCCCGGACGGCG 1718 31 100.0 34 ............................... CGGTCACGACCACGAGCCCTGGGCGTTTTTCGCA 1783 31 100.0 35 ............................... GATGCGCGCCTCTGGAACGAGGTCCTACCCCGCTG 1849 31 100.0 35 ............................... TCTCACGGCCACTGCCGACTCGTATGTCATGGTCC 1915 31 100.0 34 ............................... CATTGGTGCCTGCCTGTGCCAGTATGTATGCATG 1980 31 100.0 35 ............................... AATCGAGATGAGGCGGAGGCCCGGGCACGTGTGGA 2046 31 100.0 35 ............................... AAGCAATGGCGCTCGGCCAGCCTCTACAGATCCGC 2112 31 100.0 34 ............................... GTCGCCGGGTACCAAGCGGCAAACCTCACACCAC 2177 31 100.0 35 ............................... GCCACCCCCGACGGCCATCACACCGTCAAGGGAAA 2243 31 100.0 35 ............................... TTCGGCGTCCCGCCGAGCATGATTGGGCACAGCAG 2309 31 100.0 36 ............................... TTGACAGATGATCAGTATGACAGCTTTGCCAAGAAG 2376 31 100.0 34 ............................... GTGAAATACTCGCTCGCAATCGACTTGATGAGCG 2441 31 100.0 35 ............................... CGCTACGATCCGGCATACGGGACGTAGGGTTGCAC 2507 31 100.0 36 ............................... ATCACGCGGACGAACAAGCCCTCATCGCGCGATCCG 2574 31 100.0 36 ............................... TCCCTCTGTTTGTTAATGTTCTCAACCTCTCTGGAA 2641 31 100.0 33 ............................... GTACAGGTCGGGCTGTTGCGCTCTGTAGTACGC 2705 31 100.0 33 ............................... CAGCCCCGGCGTCGGCGGCCGCGTCGAACTCCT 2769 31 100.0 35 ............................... GGGCATGACTAAACTCCTCGTTGGCGTTACGGAAA 2835 31 100.0 36 ............................... TTGTAAAGCTCAGACATGGGGGCACCCTCTCCGCCT 2902 31 100.0 35 ............................... CGACCTCTTTGAGAGTGTGTCACTGTACATCTGCA 2968 31 100.0 36 ............................... GTCGTGCAAGGCCCGCTGATCCAAGCCTGGCAGCGC 3035 31 100.0 35 ............................... TTCGGCGTGCCGCCATCAATGATTGGGCACAGCAG 3101 31 100.0 33 ............................... TGGCAAACGGTGGTAACTCGTCTGCTATTAGAC 3165 31 100.0 34 ............................... ATCTACAAATACCGGAAGGAAAAGAAACGTGTCC 3230 31 100.0 34 ............................... GTGTCCCACTGCGCCGACCACTTCGCGCCGCCGC 3295 31 100.0 36 ............................... CGCCGCGTTCGCGCCGCAGACCGTAAGCAGTTGGCG 3362 31 100.0 35 ............................... TATTCCGCCCGACCAATCGATCCGGAGGTTCGGAA 3428 31 100.0 35 ............................... TTGGCCTACCAGGCTGCGGCGAAGTGGCCGCTGAG 3494 31 100.0 37 ............................... AGCGACGCAATTGCACTACTGCTCGAAGAAGGCTGTA 3562 31 100.0 34 ............................... GCCAAGGGCTGGACGAACCGGCGGATTCTGGCGG 3627 31 100.0 34 ............................... TGGCTCCGTTGGGTGGTTGGTAAAGCCATCGGAG 3692 31 100.0 34 ............................... CAATGGTTAGTGCACCTGGTCCTCGGCAACGCTC 3757 31 100.0 34 ............................... GCGCGGAGTATCGGCGCAGTACACACCGCTCCCG 3822 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 3888 31 100.0 35 ............................... GGGCGCGGGGCGAGCGGGACGACCTGGATGCTCAT 3954 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 4019 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 4084 31 100.0 35 ............................... AAGCTGACTAGCTCGAAGAGCCAAGCGGCGATGAC 4150 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 4216 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 4280 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 4347 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 4412 31 100.0 35 ............................... TTTGCGACGGTGTTCAACGGCGAGCAGATTGACGG 4478 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 4543 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 4610 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 4675 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 62 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : CCGACCGCAGGCTCTGCCCCTTGCGCGACAAATGGGCGTTGACCGCTTCCAGCATCCGAGCGGCAATGCCGTGGGTTTCCAGCAAACGGCGAAAGTTGAGAATCGTGGTCTCGTCTGGAACGTTATCCAAGCCGCCGAGCTGGGCAAAACGCCGCAGGGTCGGGATCTCGTGCAATGCCTCTTCCATCGCCGGATCGCTCAACGCATACCACTGCTGCAACAGATGAATCCGCAACATCGTCGCCAGCGCGTACGGCTGCCGACCCGGTCGTCCTGACACCGGATAGTGCGGCTCGATCAGGGCAAGCAGTCGCTTCCACGGCACGATGCGCTCCATCTCCGCAAGGAAGATCTCGCGCCGGGTCTGCTTGCGCTTGCCCAGGCCCTCGGCGTCACCGAACGTCAGTTGCATGGATGCCTCCTCATTCCGAACAAATAGTGTCTCGCATTTGTGGTGCGTTGTTCAGAGGTTCCCTAGCATGTCACCAAATCCCGAGCGT # Right flank : ATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCACCGAGACCAGATCATGGCCATGAATCGTGTGCAGTTCCAAGCCGGGCTGTCGTTGCCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 8353-9766 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNOF01000451.1 Xanthomonas oryzae pv. oryzae strain PX061 scaffold450, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 8353 31 100.0 35 ............................... AGGAAGCGGTCGCCATTAGGAAGCTGCCGGCGCAG 8419 31 100.0 34 ............................... CTTCTCCGTGGCTGCTGCCACATTGACCGATGCA 8484 31 100.0 35 ............................... TCAGCCACGCTGACGGAGTCATTAAACGTCATGAA 8550 31 100.0 36 ............................... ACCCGGTGCCATAGCCTGGGTCGCAACCACCGGCAG 8617 31 100.0 36 ............................... TTCGCAAATTTCAGCGAGCTTTCGGGCTTGAGGGCG 8684 31 100.0 35 ............................... TTCGTCGTTGTGCTGCTAAAGGTCAGCTGCACCCC 8750 31 100.0 35 ............................... TTAACAATGTACCTGTCATCGCCATCACCGTGGAC 8816 31 100.0 36 ............................... CGCAGGAGGCACTGCCATTGCAACGGGGACTGGCTC 8883 31 100.0 35 ............................... CAGTGTACAGCTGAAGCTTTAGGGTCGTGTGCGTC 8949 31 100.0 35 ............................... TAGACAACCATCCCCGCCTCTGGCCTAGCCATGCA 9015 31 100.0 34 ............................... CGCCGGCACATGGGCGATGGTGAGCCATGAGGTG 9080 31 100.0 33 ............................... TCAAAGGGGATGCCACTCAAAGACCAGCAGGCC 9144 31 100.0 34 ............................... CAGTCGCAACAGATGGATTAGCTGCCGTGATGGC 9209 31 100.0 35 ............................... CGCCCCCAGCTACCAGACATGCTGACGCCACTGAG 9275 31 100.0 35 ............................... TGTCGTGAAATTTGAAAAGGTGCCACCTGGGCCAC 9341 31 100.0 34 ............................... TCAAATACAAGCGCACCTGTTGGGCCAAATACTC 9406 31 100.0 35 ............................... TTCTCTACACGCGCCTCGACCTTGTCGTAGTCCTG 9472 31 100.0 35 ............................... GGGGTCGTCAGTGCACCAGCAGAGCCAGCAGCATC 9538 31 100.0 37 ............................... ACTGGCGACTCAAGCACTTGCAGGAGAGCATGCGCCC 9606 31 100.0 34 ............................... ATGGGTGCCTGCCTGTGCCAGTATGTATGCATGT 9671 31 100.0 34 ............................... AAGCCAGCCGCCGACAGTGTAAGGGCAGACCCAC 9736 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 22 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATAACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGC # Right flank : GTTGAAAACTAGGGAAGGTCTGAACAACCCATCAAACCTCTAAAATTCCAGCTTCTTGCATTTCAATGACTGGAAAAATGCTGAGTCGGGTGCGATTTTTGCAACGTTCTGGCGGTTTTGGCTGCCGCCAGGCAGCATTATCCCCTGGCCGGCAGCAAGTGCCGGCGCACCATCCACAGATTCGACAGCGCAAATAACGTCTGCACCTGTGCGGTGTTCTTGGCCAGGCCGCGATAGCGCACCTTGGTGTAGCCGAACTGCCGCTTGATCACCCGGAATGGGTGCTCCACCTTCGCGCGCACGCTTGCCTTGAAGTGTTCCCAACGTTCTGCCCAAGCACGCGCGCGCTTGTTGCCAATGGCTTGAATCGTGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //