Array 1 90195-91283 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL586311.1 Prevotella buccae ATCC 33574 SCAFFOLD1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 90195 36 100.0 30 .................................... GGGCAGACAAGACGGAATGAACCGCATCCG 90261 36 100.0 29 .................................... TGAAGGGGATGCAGGTGACACCCAATGCG 90326 36 100.0 30 .................................... TAAAGGCACCACATATATCTGGCTGGATAG 90392 36 100.0 30 .................................... TTGCCACCGACGACACCGTGAGGATAAATT 90458 36 100.0 30 .................................... AAGCTGACTCATAGGTTCAATATTTCACTA 90524 36 100.0 30 .................................... CCGAAGAGGGGAACAACGAACACAAAACAG 90590 36 100.0 30 .................................... GATTAGTGGAAATAATTACAGTTACATGTA 90656 36 100.0 30 .................................... AATCGGGCGTGTCCATAAATTCGGCATTGA 90722 36 100.0 30 .................................... TATACCGATTTGTCGCGGTTTGAGATTTTA 90788 36 100.0 29 .................................... TCGTGAAACTTCCTCAATGTCTCTCTGAC 90853 36 100.0 30 .................................... GAATCCGTCGTTGAAGTCCATATTGTAGAA 90919 36 100.0 30 .................................... CGTAGTCTATATCGTCTGAATCATCACTGC 90985 36 100.0 30 .................................... AAAGTCTATCAAGGACTTCATCTTTGGTTT 91051 36 100.0 30 .................................... TTGTCACATCGCTAAATCCATTCAACCCTG 91117 36 100.0 29 .................................... CGTCAACTTCCTGCATCCCATGGCCCAAT 91182 36 100.0 30 .................................... GCCTACGTGATATTGAAAGATGGAAATGTT 91248 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 100.0 30 GTTGCATCTGCCTTCTTTTTGAAAGGTAAAAACAAC # Left flank : TGAGAATATTGAATATGCCAAATACCAAGCTGTGTTACAAGCACATAAAAGCCTGTATAAACTACTCAGATTTACTACAAATACTGAAAATGAAGACAGCATATTGATTTGGGAAAAAACAAAAGATGGTAAGCAAGAAGCAACCTATTATTTTAGAAAAGAAAACATACGCAAATTTATAAAAGAGCTTTCCAAAGAAATATATAACGAAGGATGTGGTATTTTTATGTCAAAAGAGGCTCTGTCACTAATTTCCGAATATAGAAATATTGTTTATGGTTTCATGCTTTCCGCCCAAAACAATCCCCAAGAAACAATAAGAATAACTAATAGAGAGTCTGTAGAACGAATGAAAAAGATTCACCAAAACCTCTCGATAGAAATCAGACAAGCAATCAATCTGAAAAAACGAGATTTAAGATTTTAATAAATAAAAAGTGAGGAAGTATAACCTAAAAATAAAGAAAATAGATTGGAAATGAGTCGTTTACTAAATATCT # Right flank : CTGCTATTTTATGAATGAAGATTATTACCTTAAAACATAATATTTCGTCATCTCAAATTGAAACATGAGACAGTTATCATCAAATATTAAAGCAAATAATTTTTAAGAAGGATACAAAGTATATAACAAATATAAAAGAGAATTTGGGTCTTGTATGGAAATTCTATAAGAATCAAAAACTTATATAAAATACGCGATGGGATAAAACGTGATCAAACATACTCATCTTAAATGAAAAGAAAAATGAAAAATCTCTTCTCAAACAAGTCTTTGTCCCCTAAAAAAGACACAGCAAAAGATTCCAAGAGAACCTTTTGCAAGATAAACAAACCATCTTGCAGATTCTACAAGCCATAACAAAGGGACCTACACAATTAGGCCATGAAAAAAGGGAAGCACACATGCACTCCCCTTGCTAACAAAAAATTACAAAATAAATGGACAGGACGTAAAGCGACATGAAATAAGTCGACTACTCTGACATACCATCATCAAATTGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATCTGCCTTCTTTTTGAAAGGTAAAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.30,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 1612523-1611552 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL586311.1 Prevotella buccae ATCC 33574 SCAFFOLD1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================================= ============================ ================== 1612522 49 100.0 27 ................................................. GGAGAAGTACACCGTCCGTGAGATGAT 1612446 49 95.9 28 ...............................................TG TATCTGACAAATCGCAGGTTGCTTTTTG 1612369 49 98.0 28 ................................................G GCCGGAGGCCGCATGGGGAGTATCTACT G [1612339] 1612291 49 98.0 28 ...............................................C. CTATGGGCAGGACGACAAGGCTAACTAT 1612214 49 95.9 27 ...............................................TC GGTTATCTTCCGCAACGGGGCGCACCT 1612138 49 95.9 28 ...............................................GC CGACTATTTTCTGAAATCGTATATTTCA 1612061 49 95.9 28 ...............................................GC TTCCGGCTTTCATTCTGCCTGATGGGGA 1611984 49 98.0 28 ................................................T GTGTAGGAATAGCCTGGCCGCACTTCGA 1611907 49 98.0 28 ...............................................C. CGGACACTCCACACTCGGCGGCCGGAAA 1611830 49 100.0 28 ................................................. TTTTTGGACACAAGGCGGTTGCTGTGGT 1611753 49 98.0 28 ................................................G AATACGATCTCACTATAGAGGTCTTCCA 1611676 49 95.9 27 ...............................................CG CGCACGGGCAACAGTAGTATACTCCAA 1611600 49 95.9 0 ...............................................TC | ========== ====== ====== ====== ================================================= ============================ ================== 13 49 97.3 28 GTTGTGATTTGCTTGAAAATTTGTACCTTTGTGGTAGCAACAACAACAA # Left flank : CGACAACGTGAGTATCGAGCCCTACGGTGGTGGCTATCTGGCCTGCGGCGTAGGCGGTAAAATCAAGGACTACGGCAAGCGTGCGGCCTTCAGCAGCTTTGAAGACGGCTACTTCAACCGCTTCGACGGTGGTCTGAAAATAGGTTGCGACGTGAGTTTCCAGATGCTCACCATAGGCATTGGCTACGACATAGGTCTCGCCAATGTGGGCCAAGACGTTTTCGACGACACTCGCACGGGCTGCTTCAACCTCAATGTGGGTGTGACATTCTAAGCGACTATAGGTGCTGCTTCTTCATTCATATAGCCACGCCTCTTCCCACACAAACGCCTCACCCACCGACACAACATAGAAAGGTGACTGTACCGAAGTTCAATACATCGGTACAGCCACCATCCTTTTGCTTAAAATATGAATGCGAAGATTTGGATTTATGGAATTATTCGTATATTTTTGAGCCAACAACAACCCATCACGCAGAGGGTCGAGCAGACCAGGT # Right flank : GATATCTATAATTCACTGAATTACAAATAGATACTTTGTTATTGCAAGAAAAATAAAATGACACCGCAAAGCAAAATCCCATTCGCAACGAATGGGATTTTCGCTTTCTATACAATACGTTCAGAATAGTTCCAGCTGTTGGAAAGGAGCATTAGGAAGGGTAGGCCTTTCCCCATAAAATAACTGTATGTTGGCAAATTGCTTGTCTGTAATACACAAAATTCCGACCTTTCCAAACTTCGGAAGATTATTGCGGATACGCTTGATATGCACTTCAGCATTCTCCATACTAGCGCAATGGCGCACGTAAATGGAAAACTGGAACATCGTGAATCCATCTTTAATCAGCACCTTACGGAAATCGATATAGGCCTTTTTCTCTTTCTTTGTATCCGTAGGCAAGTCAAAGAATACAAGAATCCACATAATTCTATATTCACTAAATCTGTCAAAACCAGACATAACAGGTTACATTTCGGGATAGCTAATATGCCGCACCT # Questionable array : NO Score: 4.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:-0.5, 7:-0.02, 8:1, 9:0.26, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTGAAAATTTGTACCTTTGTGGTAGCAACAACAACAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.83%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTGAAAATATGTACCTTTGTGGTAGCAACAACAACTT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.30,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //