Array 1 36891-35447 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRQA01000003.1 Mitsuokella sp. AF33-22 AF33-22.Scaf3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ====================================================== ================== 36890 23 100.0 52 ....................... ATGAACATTCAGATATTTCAATGTCATACCCATCGTAATGGTTTGAAACCAA 36815 23 100.0 51 ....................... GAGGGAGGTGATGACGTGAAGAACTGGGACTGGCAGGATGTTTGAAACCAA 36741 23 100.0 49 ....................... ATTGAGGAGAAAGTGTTCTCCATAGGTAACACCGAAAGTTTGAAACCAA 36669 23 100.0 53 ....................... TAAGTGACAACGTGCTTTTGATTGTTTTTCCAGACAATCACGTTTGAAACCAA 36593 23 100.0 51 ....................... ACAGAACGATAACAATGGCAAGTAAAACGTATTCCATTTGTTTGAAACCAA 36519 23 100.0 50 ....................... ATTTAAGAATCAACTTGAATCAACTCTTACGATATAATGTTTGAAACCAA 36446 23 100.0 54 ....................... ATCAAATCTTTCTCCGGCTTTTACGGCTTCCGCATAAAGGAAGTTTGAAACCAA 36369 23 100.0 49 ....................... TCTTTCGTGTAGAGGAATGCTGGGCTGAAAGACTGGAGTTTGAAACCAA 36297 23 100.0 51 ....................... TAGAGGCCGGATTCGTTGATGAAAACTGGATACTGGTCAGTTTGAAACCAA 36223 23 100.0 53 ....................... GGTTTGTAGTCATGTCTCCATGTCATAGCCACTGAGCACAAGTTTGAAACCAA 36147 23 100.0 52 ....................... CAAAAGCACGCCATGTATAGTCAAGCACGGCTTTCAGAATATTTGAAACCAA 36072 23 100.0 52 ....................... AGGATAATAGCTGCTGCATGATTCTTGATGGCCTCTACCAATTTGAAACCAA 35997 23 100.0 53 ....................... AGCTTCACCGCTTGCAGGTGGTACTTCTTCATGAACTCCGAATTTGAAACCAA 35921 23 100.0 54 ....................... CTTCACGAATTGCCGGTTTCTCGCTTTCAAAAGCCTCAATCAATTTGAAACCAA 35844 23 100.0 52 ....................... CCGCGCAGCAGATTGTAAATATACACCTGTTTTTCTTTGCATTTGAAACCAA 35769 23 100.0 52 ....................... AACACTGGCGTATCCTTTGACACGCATTCACATTTCACATATTTGAAACCAA 35694 23 95.7 52 .....................C. CCCTTTTCTTTCTCAAAACTTCACCCCCTTGCCCTGGCATATTTGAAACCAA 35619 23 100.0 51 ....................... TATTGCGACTTTAATTGCACATGCTCGTCAGGTACGCCGATTTGAAACCAA 35545 23 95.7 53 .........T............. CCTCAGGATTTAAATATTTACTAAGCTGCCTATGCGGCAGAATTTGAAACCAA 35469 23 91.3 0 .....................TA | ========== ====== ====== ====== ======================= ====================================================== ================== 20 23 99.1 52 CATCCCCGACAGGGGACGGAAAC # Left flank : TAGAAGGTCGGTTCAAGTGCGACTTCGATGATCTTGGCGTTGCGGATGAGGGCCGTGCGCTCGTTTTCGAGCGTGTAGTCGTGGAAGTAGTGGAGCAGGAAGGCTCCGAGCAAGGCGAAGGACGCAAAGATGATGAGCAAAAAGGATGTTACGAGCCGGCGCGTGATTTTTGAACGAAACATAAACATTTCCCCTGACTGCAGAGTTGATTCGACGCCTTTATTATATCATATTTATTCGTGATGTCTGGTAAGAGTTCTTGCATAGTCAATGTATGTCAAAAATAAGAAAACAAGAAGGATTTTGCGTATCTGCGTAGAATTAAAATAATAAATCCATTGTGGTGGTGACATAATCCGCACCGCGGCTTGCTGTATAAGGATTCGAGCAACATATAGAAACTTTTCGATTGACAAAACTGAGCGTTTTGCCATCCGCCCCGCAAAAGCCCGTTTCTCCATTGCCGCGCAACGGATTTCACCGACAGAGTTTGAAACCAA # Right flank : ATAGAAGGGAGGTCTTGCAATGAGTTTTGTTTATATCACAGAAGATGGCGCCTTTATCCGTAAGCGCGGGGGCAGCTTTATTGTGGGGCAGAACGATCAGGAGCTTATGGAGATTCCCGAAGCGGTGCTTGATGGATTGGTCATCATCGATTCCGTGCAAGTATCTTCTCGGGCGATGGTTGAGTTTCTTCGTTTGGGAATCCCCGTGACCTGGCTTTCACGGCGAGGTGCCTTCTTTGGCCGCCTGGAATCTACACGTCATGTCAATGTCTTTCGTCAGGAAAAACAGGTTTTGCAACGTGGCGGGCCATTTTATCTGGCCTTGGCCAAGAAATGCATAGCGGCAAAAATTCATAATCAACTGACGATTTTACGGCGTTATAATCGTTATACAGAGTCATCTGATGTACAAGACGGCATACGTCAAATCATCGCTAACAGCCGCCATATTGATACGGCAGGGACCAACGAGGAATTGATGGGGTATGAGGGCATCGTTG # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.40, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CATCCCCGACAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,12] Score: 0.37/0.37 # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 44365-40187 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRQA01000003.1 Mitsuokella sp. AF33-22 AF33-22.Scaf3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 44364 28 100.0 33 ............................ ACGGACAGAGCAGAGAATGGCGATTGGATTTAT 44303 28 100.0 32 ............................ GCGCTGTCATCCTGTGTCATGTCTTGCGTCAT 44243 28 100.0 32 ............................ ATATCGTTACAACGAATGGCGCTTTCACGAAG 44183 28 100.0 32 ............................ TACAGCGCGTGGTGGCGATAAACAACCGTTAC 44123 28 100.0 33 ............................ AGCATCTTTGCTCCACCCGTGATAGATGGATTT 44062 28 100.0 32 ............................ TTGCTATGGCCACAACGGATCCCGTACTTGCG 44002 28 100.0 32 ............................ ATCTCATTGACAAGGGTTCGCCCGCCGTGGAA 43942 28 100.0 32 ............................ AATAATTTTGAGGAATACAAGGATTGCACTAA 43882 28 100.0 32 ............................ ATCGTCTGCACAAAAGATATTCGCGTACTGTC 43822 28 100.0 32 ............................ AACTGATTTCCGGCTACTGTTCCTATTGTCCC 43762 28 100.0 32 ............................ TTACTATAGGGTTCGGATTTTTGTCTGCCGTA 43702 28 100.0 32 ............................ TTACTTTTGCGACCACGTTACTATATAAAATA 43642 28 100.0 32 ............................ AGTAGAAAAAGAGATGCGGGGCAATTCTGGGC 43582 28 100.0 32 ............................ TTTATCACTTCGTGATAGCTTCGCTAATCATC 43522 28 100.0 32 ............................ ACCATGCTTTATAATACAATGCAACTTCGTGA 43462 28 100.0 32 ............................ TCACTCAACAAACGGCTTTCCAGCGCTTGATT 43402 28 100.0 32 ............................ ATACGATATATACGTCATCCTTTGTGATTTCC 43342 28 100.0 32 ............................ GCTTTAATGTTTTCCGGGACAAGTTTAGCCTG 43282 28 100.0 32 ............................ ACCGCAATAATCTGTTCTATAACTATTTGTTT 43222 28 100.0 32 ............................ GATACGGCAACGACCGTATACAATAACAACTA 43162 28 100.0 32 ............................ GATACCGGCAGCGCATCACAAAGACGGAGGTC 43102 28 100.0 32 ............................ TTCGCCAATCTCCGCGAGCAGGTCTTTCAATT 43042 28 100.0 32 ............................ TGTCCGTGACGCCGCCGCCTACGCCGTCATCG 42982 28 100.0 32 ............................ GGAAGGATCTCTGCTGAAGCGTGAGGAGGCGA 42922 28 100.0 32 ............................ ACCTCACATCAGAAAAGCCAGCTAACAATTAG 42862 28 100.0 34 ............................ TTGCGGCTCTTGGTACGAAAGAGCAGTAGTTTCT 42800 28 100.0 32 ............................ TGCTTGAGCTTGCCGATGATACTTTCCCGCTT 42740 28 100.0 32 ............................ TGATTGATGATATTCTCGATGCTCTCGGAATA 42680 28 100.0 32 ............................ ATCTGCTCCAGCTGCTCCCGCCAGTCATATCC 42620 28 100.0 32 ............................ TCGTCCATTTGACTCTGGCGCTCTTTCTTCAA 42560 28 100.0 32 ............................ TGCATGACATCCATAGCCTCCCCGCTGCCGAG 42500 28 100.0 32 ............................ ACGTTCTCGTCCATCGCGAGCGACTGACAAAA 42440 28 100.0 33 ............................ AAAATGGTTTGCGTTTGCATATAAACATTCATT 42379 28 100.0 32 ............................ AAGCTCGGCATCACGGGCCTGATGGACACCAA 42319 28 100.0 32 ............................ AGAAGAGCACCGGTGCGGGCAAGTAAGGAGGA 42259 28 100.0 32 ............................ ATGGAATGACGTGCTTGCGGCGCTTGTCGTCG 42199 28 100.0 34 ............................ AATATCCGTGCAGGCGGCCATGAGCAACCACGTT 42137 28 100.0 32 ............................ AATGCTGACTGGGAGAATCAATGCGCTTCCTG 42077 28 100.0 32 ............................ ATAACATTGACGGCGTACTGCGCAATCTGCGG 42017 28 100.0 32 ............................ AGCCACGCAGATTTATTACCAGAATACGATGC 41957 28 100.0 32 ............................ GACAATATGCCTGCAACCATGTCAACGACTCC 41897 28 100.0 32 ............................ TGGACATGGTAGACAGAGGACTCAAAGAGCGG 41837 28 100.0 34 ............................ CTTGAGCTGTTCTTCCTGGACCGTGATGGCATAT 41775 28 100.0 32 ............................ GAGATATTACCGCCAGTTTTATCTAACCTTAC 41715 28 100.0 32 ............................ GCCCGGGCATAAGGCGGAGCAGCGGGTTCGAG 41655 28 100.0 32 ............................ AAACATAGGTACAGAGGAGACGGCAAAGCAGG 41595 28 100.0 32 ............................ TGAGAGCTGCGCCAGTATTCGTCTCATGCGTG 41535 28 100.0 33 ............................ CGTGTTAAGTCGGTCGCAACAAACGAAACACTG 41474 28 100.0 32 ............................ TATATGTTATATACCCCTGCCATCTGCTACCC 41414 28 100.0 32 ............................ AATCATCAGTGCCCTTGTTCTGCTTAATCATC 41354 28 100.0 32 ............................ TGATTGACGAAGAGCTGATTCAGCTTGATCAG 41294 28 100.0 32 ............................ TTATATCAAAGACAATGCCAATTTTGTCTGGG 41234 28 100.0 32 ............................ TGTCTGAAATGACGGCGCGACAATGGCGCCCG 41174 28 100.0 32 ............................ AGTTCGATACGAACGCCATCATCGAGCGATAC 41114 28 100.0 32 ............................ AACATGTCACGGATCTTACACCAGCCAGATTC 41054 28 100.0 32 ............................ TGTGCTTGCATCTGCTGGGCAAGCTGCGGGAA 40994 28 100.0 32 ............................ TGTTACTACATCATTTCTCCACTGTTTAAACG 40934 28 100.0 32 ............................ GTTGGCAGGTAGACAGTGGGGAACAGCTACTG 40874 28 100.0 32 ............................ AGAAAGCTTTGTAATACTGCCGTATCCATTCG 40814 28 100.0 32 ............................ ACGTCGGATTTCATGCGGCTTGACTTGTCTTC 40754 28 100.0 32 ............................ ATTTTGACGTATCCAGATTATTGCCATTCAAG 40694 28 100.0 32 ............................ AAGCGCTGATAAAGGCTAGAGCGCTTGTCCTG 40634 28 100.0 32 ............................ ATAAAGCCCGCCAGCGTGTTCACGATCGGCTT 40574 28 100.0 32 ............................ GCCAAGATTGCGTTTGTCACCAGTCCGGCCGG 40514 28 100.0 32 ............................ TTCCGTGCTGTCCCGTCTGATCTGCTTGACCA 40454 28 100.0 32 ............................ ATATGATGACAGCAGCAAGACCGCCGCCCAAG 40394 28 100.0 32 ............................ ATGCGTTGATGGTATCATTATAGCGCGTAAGA 40334 28 100.0 32 ............................ AAGTTATTTAGACCGCTACGTTGGTGGTTGTT 40274 28 100.0 32 ............................ GTACAAAAAGCCAAGCGCGCCGGAAAGGCACG 40214 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 70 28 100.0 32 GTTAACTGCCGCATAGGCAGCTTAGAAA # Left flank : ATTTGCAGCATTTGAATCTGACTGAGGCATTGAAGCGCTTTACACCAGATTATGTGAAAATAAAGACCATCCGTCCAGTCCCCGTCAGGGCCTGCAAAGGCTTCGTGACGTACGGGCGATATCAGCCAGAAGCCACTGTTATGCGGAAAGCCAGACGTTATGCAAAGCGCCATGGTATTTCGATAGAAGAAGCGCAAAAGCTTTTTCCGGCACCTATCAATAAAACCCGATATCCATATATTCAATTGGATAGTATGACCAACCATCATCGCTTCAGCCTGTTCATCCAAAAAAAAGAAGCAGTTGAGCAGCCCTTCAAGGGATTTTCTGCATATGGGTTCAGTACTGAAACATCGGTGCCTGACTTTTGACCTAAAAATTTTCCGTTGCTGGCAGGCCTTGTAAATCAAGGGTTTTGACAAGGACCTAAAATTTTGGTTAAATAAGGGTAAATAACTGCGAGCTTAGTCAGAATAAGGGTATTCACGCAGGATATTACT # Right flank : AGGACGGTCATCGCGATGCGCGTATCATAGTGTAAGCGCTAAATTATCCGGTGTATAATCTGCCAGCCTGATGGCTAAAATTTTCGTCATCACTGAAATGCGCATCAAAAAGCGCTGCTGTGCGAGCAAGGAAATTTGGATGGTTCATTTGCAGTTTTACTGGATTGTCTCATTCCATGGCAGGACGTCGTCGAGGTACTTGGGATGCTGCTGGATGTCGGCGTTTGACAGGTGCTTGAAGAGGTATTGGAACGGATTCAGGCCGTTGGCCTTGGCTTCTTTCGGGGAGTCGCTGAACAACCAGTTCTTGCGCCCCTTCTCTTTGTGGACCTGTACGGGCGTCTCATCTGCATGGATGATATCCTGCTCGAGGAGGCCCTGCTGCAGTCGCGAGACGAGCGGCATGGCCGGGTTCTCGATGGAGAAATGCTCTTCCTTGCGGCAGGTGAGGCATTGGAAGGATTCGCAGCAGTAGTCGATGATCTTGATCTTGGCGGGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 38253-38740 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRQA01000015.1 Mitsuokella sp. AF33-22 AF33-22.Scaf15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 38253 37 100.0 38 ..................................... ACCTCATAACCAAGATTCCACGCATTATCGGCGATGTG 38328 37 100.0 38 ..................................... ATCTTGCAAGCTCATCCGAGCACGCGCTTCGCGCGCCG 38403 37 100.0 37 ..................................... GTCTCACTGCTCGAGGGCGCGAAGGCCGAGGCCGTCG 38477 37 100.0 37 ..................................... AGGTCGAAATCTTTTTCAGCCTCTCTCAAAGCGGAGT 38551 37 100.0 39 ..................................... CCTTACGAGCGACGATCCGCGGCTTCCAATCCTTGACCG 38627 37 97.3 40 ...................................A. CTCTCCAAATCCGGTTCTGTTCAGGGCCTCCATTAACTGA 38704 37 89.2 0 .............................T..CTC.. | ========== ====== ====== ====== ===================================== ======================================== ================== 7 37 98.1 38 ATTGTAGCCCTCCTAATACCGTTTTCGGTATTGAACC # Left flank : CACACCGCTCCGCAAGGGCGCTCTGACTGATGCCCAGTTCCTGTCTTCGCTGGATGATAGAAGAAACAATATCGCTTACTTCTTCAATTTCCTCCATATTGCGGCGTTCTTCCTCACTAACTGCTTTTACATGATTTTTATAGTCTGCCCATCTTCTCATGCTTTTTCCTCCTTCATGTTCTTATCATAATGATAGCATATATGCTATCATTATGTGAATTACATACCCTGTATTCTTCGCTGCCCGAGGATTTGACAAAATATTCCCATGATGGTATACTGCAAAATATAGAAAACCATTTTGAGGGGCAAAAACGCCCCAGGTTTTCCGTTTTTCCACCGAACACCGCCAAGCCTTGCAAGTCAAGCGTTCCCGTAATCTGATTTGCTTGAAAAGCGAACATGGGCTTTCACCGCAGCGTTCGAAAAACCGAAAAACGACTGAGGTTTTCCACTTTACTGATCTGGGGCCAGTAACCCCAAGGGCTCAGGGGCACAGT # Right flank : CATCATCATCAAATTAAAAATCCCCGCTTACATATAGATTCCACAAATCCATATGTAAGCGGGGATTTTTCTGAACATAAACGAAAGGAACGCGTATGCGCACTTACCTTGCCATTGACCTCAAATCCTTCTACGCCTCAGTCGAATGCCGGGAACGGGGCCTCAATCCGTTGACGACGAATCTGGTCGTGGCGGACCCGACGCGGACGGAAAAGACCATCTGTCTGGCCGTTTCGCCGTCGCTCAAGGCCTATGGCATTCCGGGCCGTCCGCGCCTGTTCGAAGTCGTGCAGCGCATCAGGGGCGTAAACAGCCAGCGGCGGTTTCACGCACCCGGCCACACGCTGACGGGGAAATCCGCCGATGCCGAAGAACTCGCGCAGCATCGGGAATATGCCGTCGACTACATCACGGCCACGCCGCGCATGGCCCTCTACATGGCGTACAGCACGCGAATCTACCAGATTTACCTGCGCTATGTCGCCCCGGAGCTCATTCAT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTAGCCCTCCTAATACCGTTTTCGGTATTGAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 34049-40433 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRQA01000020.1 Mitsuokella sp. AF33-22 AF33-22.Scaf20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =============================================================================================================================================================================================================== ================== 34049 33 97.0 33 ................................C AACAGGTTGCCGTTTTTATCGAAATCTGCATCT 34115 33 100.0 33 ................................. TGTCTGGATTGGTGTGTGGCGTAGCATCTTGGG 34181 33 97.0 36 ................................C CCGCTTACGATGATACGAGCATTGCGGCGAGGAGCG 34250 33 100.0 35 ................................. CCGCGTGTACAGTCCATTCGCCGAGCTTCGGGATA 34318 33 100.0 35 ................................. GTCAAAGTGCCGGAATGTATCTAATACTTCGCGAC 34386 33 97.0 34 ................................G TCTCGGCATCAGTCTCCGGAGGATCACTGTATCG 34453 33 97.0 34 ................................G CAGATGACGGCAAGCCGGTGACGGTCCAGCAGAG 34520 33 100.0 36 ................................. GCGCGGGAAAATGGAAGGGCTCAGCGATGTACAGCA 34589 33 97.0 36 ................................C CCTTGCGATTGGCCAGAAGAACGTTGTTTTTTGGGC 34658 33 97.0 33 ................................A ACAACCTGATCGTTACTTTCCCAGCGCTGTGAA 34724 33 97.0 35 ................................C GTTCGGCTCGACGCTGGCACCGACGATCCGCGCGA 34792 33 97.0 35 ................................A CGTTTTGGTAGAATTCAGAATCAAGATTTCCCTGA 34860 33 97.0 34 ................................C TTCGTCCCGAACAGGTCGAACGGAATCCGGCGAG 34927 33 97.0 34 ................................A ATGAATGCCGATGCTTCCGCCTTGCCGATATACG 34994 33 100.0 35 ................................. CGTGCGAGCTCGGCGCTTGCCGCAGCATCATTGGC 35062 33 97.0 35 ................................G TTATCGTCACATGCACATCAATGGCTTGATAGGTT 35130 33 97.0 32 ................................C GCGATGTCACGTCATTGTCGCGTGAAACCCTG 35195 33 100.0 34 ................................. GCGACGAACGCGACAACCGGCCTCAAGAGCCGCG 35262 33 97.0 34 ................................C ACCAGCGATGCAGACAGCACCGAGCATGATGCTA 35329 33 97.0 34 ................................A CATGGCTGAAAACGCGATACATCTTGACCGACAC 35396 33 97.0 33 ................................A TTGCAAAATCCTCCTCAAGATGTGATAAAATAG 35462 33 97.0 34 ................................A CTTTTCCGCCACACAGCAAAAGCCTTCAGCACTT 35529 33 100.0 34 ................................. TAAAACGACGGCCATCATCGCGCCTGGCGTTGCT 35596 33 97.0 33 ................................A CAAATCAAGACGGCCTTGAGTGGCTGGCTGAAC 35662 33 100.0 34 ................................. ATTGATGATACCGGAACCAGAGATAGAGGAAGAA 35729 33 100.0 34 ................................. CCACGCCGGTAAAGTCTACGAGATTGACAGCGTT 35796 33 100.0 34 ................................. TCGGTTTGATCTGTACCTGTCTAAGCTGTGGTAC 35863 33 97.0 35 ................................C TATTATATACTGTGTTACACAACCCAAAGGGCAAT 35931 33 97.0 33 ................................A AAGATCCGTAAATATCGTGAGGCTTACGTCCAG 35997 33 97.0 33 ................................A GCCAACTGCGTATAATCCGTCGGTTACGATAAA 36063 33 100.0 35 ................................. TGACTGCATAAATTGCTGGCCCTGATGGTTGGTAA 36131 33 97.0 33 ................................A CGATATTGGCAGCCGTTGCCGTTGCGTCAGCTG 36197 33 97.0 33 ................................C CCTTGCGATTGGCCAGAAGAACGTTGTTTTTTG 36263 33 97.0 36 ................................G TCGGTTAAGGTCACTTCGTACGGATCGCCGTGGCTG 36332 33 100.0 35 ................................. TTGGGCAAACGTACCCAGCCGGGTGCATCCGGCCA 36400 33 97.0 34 ................................C AATAATAAGAGCAATACGAGCAGCAGCGGACGTA 36467 33 97.0 33 ................................A ACTCCCTTGTCCTACTGACTGGCAATAAGACAG 36533 33 97.0 34 ................................G AATTATTGTTTATCCAGAAAGCGTAACCTGTCTT 36600 33 100.0 33 ................................. GTCTGCGGTCAAGGATCGTCAGATTAAGGTTGA 36666 33 100.0 35 ................................. TCGTGCCGTAGTCGCAGGCAATATAGCGGCGGCAC 36734 33 97.0 34 ................................A TGATGTCCATGCGCTGGTCCAATAGCTTGCCGAT 36801 33 97.0 37 ................................C TTGCGTCCATGACGTCGGCTGCATCTTCATCGTCCTG 36871 33 100.0 33 ................................. TCTGACACCGCTGTCACCGTTACTGTTGCCGAG 36937 33 93.9 35 ...A............................A ACAGATATGCTTGACGCGGTAATTCTGGCCACAGA 37005 33 100.0 33 ................................. ATGTTGGTTCGATGTTTGACTACGTTGCTTATT 37071 33 97.0 33 ................................A TCGTTTGTCTTTATGGTTGCCGCCATCTTATCA 37137 33 100.0 32 ................................. ACGAGGTCTCGGCCGTCAATGAGCCAGCCTAC 37202 33 100.0 33 ................................. CTCCTCCAAAAGCAACCAGTATACAGTGGGGAT 37268 33 97.0 35 ................................A AAAGCTCGATAGAGCAAGTGCCATTGCAAAGATGG 37336 33 97.0 33 ................................C TGCGCTCGAAAGTCCGGCAGAAACCTTCGCACC 37402 33 100.0 37 ................................. ACCGCTGGGCGAAGGATGCGCTGATCACGAACCTGGG 37472 33 97.0 39 ................................C TTTTGCCTCGATGACATCACCGGTTGCAATGTCGATGAG 37544 33 97.0 33 ................................C ATGCAGACTGATGACAAAAAGAAAGAGAAATAT 37610 33 97.0 34 ................................A TCCGCGCCGCCCGCGCTGGCTGTCGTATTTTTTA 37677 33 97.0 34 ................................A GATAATCTTGTTCTTTTTCCGAGAGGAACAACTC 37744 33 100.0 34 ................................. CCGGTACATGGGTCGAAGAATACGCAGATAGCAT 37811 33 100.0 33 ................................. CGTCCAAGTGGCGTCCAGAAGATTATCAGACCA 37877 33 100.0 36 ................................. TCCACGCCGCGATAAAAACTACTGTCAAGGTTCCCC 37946 33 100.0 33 ................................. TGATACAGGTATTTTTAAAGACTATAAGGGCTT 38012 33 97.0 34 ................................A TCAGCGTCAGCGGGTCTGTGTAGGCGTACTGGAA 38079 33 100.0 35 ................................. TCAGTCAGCCAAGCATCCCACTTGCTAGGCCTGCC 38147 33 97.0 35 ................................A GCAGGGCCGATGATACATTGAAATAGCCGAGGCAC 38215 33 97.0 34 ................................G CAGGCCGGCTGAACCAGGGAAGAGAAAAACCGAG 38282 33 100.0 33 ................................. CAAGCGCTACCCGATGCAGCTCGATGCCAAGGA 38348 33 97.0 33 ................................G GCGAGAAGCAGGTGGAGAAGCGCCTGCAGCTCA 38414 33 100.0 34 ................................. TGAGCTCGCCCACCTTCATCCAGCGCGTGATCTC 38481 33 93.9 34 .............G..................G AAAAATCCGCATAGTTTACCTTGAAAATCTGAAC 38548 33 97.0 33 ................................A TTCAGTAGTCTTACCAAACGGTTTGCGATATCA 38614 33 100.0 34 ................................. GGCTGAGAGTCAAGGATGGCCTCGGCGATCATCG 38681 33 97.0 33 ................................A CTGGCCCACGTGACGAAAAGACGGCCCCCGCTC 38747 33 93.9 33 ...............................TA CCGAACGCTTTAGCGTATTCCGTCAGTACCTTA 38813 33 97.0 35 ................................G CCGCCGTAAGCAATCGACAGATCATTGATATCCTC 38881 33 97.0 34 ................................A TCCAGCGCGTAATCTCCGGATGGACTTCTTTCAA 38948 33 100.0 32 ................................. CGCCGAACTCCGTGCTCAGCATATCGGCCAAA 39013 33 97.0 33 ................................A GTCGCTGGGAGTGAAATCAGAGAAAGACGGAAA 39079 33 97.0 36 ................................A TAAGGTGTCCAGCGCGTAGCTACGTCGCACGGCCCC 39148 33 100.0 34 ................................. TGTCGCGTTCGCGCTCCATCACGAGATAATGGAA 39215 33 100.0 34 ................................. CAACATGTCAGATGATATCGTGCTGATTGGCGAC 39282 33 100.0 34 ................................. AAGACATGCTGCAACACGACTTTCAGCCGCGCGT 39349 33 100.0 35 ................................. TGTAAATTGCGACAGCCCCCAGGACGATGGCAGCC 39417 33 97.0 33 ................................A CGGTTACCTACAATCGGCAAACATTACAATCAT 39483 33 97.0 33 ................................A CCATCCACTTGATGTCGCGTACGCCGCGCTTCG 39549 33 100.0 36 ................................. CCGCACGGTCCGAGTCAGCATCCGTACCATCCGCAC 39618 33 100.0 34 ................................. CCTCGCGGATCTCGTCGAGGTCCTTTTTGGGGGG 39685 33 93.9 34 .G..............................A ATGGCGTCCTTCAGCCGCTCAATATCGCTAAGAT 39752 33 97.0 35 ................................C GAACCGCTACACTACTTCCGCATCCATCGCTGGAG 39820 33 97.0 34 ...............................T. CCGTATGATTCAGATAGGGATTCATGGCCATCAC 39887 33 97.0 36 ...............................T. TTGACCAGCATGACGATGGCGGCAGAAGGTAGGGAG 39956 33 97.0 34 ...............................T. ACCACGTATGCTACGGCAGCAAATCGAGCAGGCA 40023 33 93.9 36 ...............................TG GTGGCAGAATATCCAGTAGTGAGACGCTTTGTAGAT 40092 33 93.9 34 ...............................TG CGTGAGGGCATTGAGAAGGCAAAGGCGATGCTCG 40159 33 93.9 207 ...............................TG CTTATGCGGGTTCCTGTGACGAATTCGGTCAGTGTCGCACCTTCATGGAACGCATTGTAGCAGACATCATTGAACGATTAAAGTTCAATAGCGTTCGAAACATGGCCAAGTCTTCCTTAAATGTGATATAATAAATAGTTGTATTCTTCTTAATCGTACAAATTAAAAGAAAATTTATTTTGCCTTGTTGTTAGCTTCGGCTTTTTC 40399 33 81.8 0 ..T...TT........A..........A....A | GA [40425] ========== ====== ====== ====== ================================= =============================================================================================================================================================================================================== ================== 93 33 97.7 36 GTCGCACCCTTCATGGGTGCGTGGATTGAAACT # Left flank : GTGGATGGTTATGTATCGGCAAATCTGGCACGGAAGGTGACTGGCTTTAGCGAAGATGATTTGCAGCTTTTATGGAAGGCAATCATCAATATGTTTGAATATGACCGCTCCGCTGCCAGAGGCAATATGGCTGTACGTGAACTCATCGTATTCAAACATGAAAGTGAATTGGGAAATGCGCCAGCCTATAAACTCTTTGACACTATTCACGTTCAGAAAAAAGAAGGCGTTGTTGCTCCTAGAAGTTATATGGATTATGATGTTACCATAGATGAAGCTAAGATGCCAGAACGCGTTACTTGTATTCGCATGATTTAAAAGGGATATATAGTGTCGCGAAGTGGCATCACACATGAAATGTCTGATACCTTCGCGATACTGTGATTTCCTAGGTAAGAGAATGATTGCTGGATAGTTTGCTCGTGCGGTTGATTTTTCATTTACAGGTTCGCAATACAACCGTCGTAAATTAAGTCTGTGACTGAGTTAATTTGAAGGCC # Right flank : GTAGGGGTGTTCGCGTCGGGTGAAATTCGCCAAATTGCGTCGGTCGAA # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.16, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCATGGGTGCGTGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //