Array 1 845271-846456 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCMR01000001.1 Salmonella enterica subsp. enterica serovar Newport str. SL254, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 845271 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 845332 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 845393 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 845454 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 845515 29 96.6 32 ........A.................... AGATATGAAAAACGTAAAAATTTACACCGCCA 845576 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 845637 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 845698 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 845759 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 845820 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 845881 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 845942 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 846003 29 100.0 32 ............................. GGCGCCCGCGTTTCTCGGCTCGGCGCAATATC 846064 29 100.0 32 ............................. GTAGTGCAACGCCGGTGATTTTACCAGTATCA 846125 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 846186 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 846247 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 846308 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 846369 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 846429 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 863126-864436 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCMR01000001.1 Salmonella enterica subsp. enterica serovar Newport str. SL254, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 863126 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 863187 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 863248 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 863309 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 863370 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 863431 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 863492 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 863553 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 863614 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 863675 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 863736 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 863797 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 863858 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 863919 29 96.6 32 ............................A CCAATAACCGAAATATCCACGGTGGAAATTTC 863980 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 864041 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 864102 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 864163 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 864224 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 864285 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 864346 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 864407 29 100.0 0 ............................. | A [864434] ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //