Array 1 114977-114165 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_NXTK01000011.1 Listeria monocytogenes strain CFSAN046010 CFSAN046010_contig_0000011, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                       	Insertion/Deletion
==========	======	======	======	=============================	======================================	==================
    114976	    29	 100.0	    36	.............................	CTCTTCTCGTGTCGCTTGTTTTGCTCATTCCGCCAC  	
    114911	    29	 100.0	    37	.............................	ATAAATTTCGCTACTTTATCAATCATTCCAAATCTCC 	
    114845	    29	 100.0	    35	.............................	ATTACATTTATTAAACAATGTACAGGTTGAATTAA   	
    114781	    29	 100.0	    37	.............................	CTTTTTATATATTGTGCGCTTAACTTAGTTGTTAAGA 	
    114715	    29	 100.0	    36	.............................	TTTTTTGTAGCGGAGGTGTACAATGCCGAAAGTGAC  	
    114650	    29	 100.0	    36	.............................	CCCTGTAGGATTAATATACAAAGGTTCTCGTTTTTC  	
    114585	    29	 100.0	    35	.............................	AATGCCGAAAGGTTCGCTTTCATTTCGCTATTCAC   	
    114521	    29	 100.0	    37	.............................	AAAATAATCATTAATGCAAACGCAATACAAATGACTG 	
    114455	    29	 100.0	    38	.............................	GTGGTAACAGCGTTCTTATTTCCTGGCGGAGCGCTTCC	
    114388	    29	 100.0	    34	.............................	TTGGTCCTTCCTATCCCTCCACCTCTTTGTTTTT    	
    114325	    29	 100.0	    37	.............................	TCGTTCGACGGCTTAGACAACCATCACGCTTCTTTAA 	
    114259	    29	 100.0	    36	.............................	CCTAATACACCTAAACTACTCTTATATATAAAAACA  	
    114194	    29	  93.1	     0	.......................C....C	|                                     	A [114169]
==========	======	======	======	=============================	======================================	==================
        13	    29	  99.5	    36	GTTTTAACTACTTATTATGAAATGTAAAT	                                      	       

# Left flank :   CATTTAAAATTTGGTGGTGAAGGTATGTATGTAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATAAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTTGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAAGCGTAAAATAGAGCGG
# Right flank :  GTCTTCTTAAAATTTAAACCCAAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCTTGCAACACCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAGCTCAAAAAGAAAATCTGCACAGTTTCCGCAAACCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGTACTTTTTTATTCGCAAGTAATTCCTTCTCCACGCCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATAG

# Questionable array : NO	 Score: 6.23
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAACTACTTATTATGAAATGTAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:82.76%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [3-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,4.91   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
//