Array 1 578-2488 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPDE01000010.1 Veillonella atypica KON strain ATCC 17744 Contig_10_len_79726, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ============================================== ================== 578 34 94.1 43 ....T........T.................... AGGTTACTATCTGGATTCTGAAACTGCTGAATACGCTGAATAG 655 34 100.0 45 .................................. GCGGAACAAGTTGCAGAAATTAAAGAGATTTTATTAGATGAGTTG 734 34 100.0 45 .................................. AAAAATGAATAACCACAATTTAATAATGAATGTTAAGGCGTTACG 813 34 100.0 44 .................................. GCTATTACGGGGGAATTATGATGATTGGATTTATGCAAGCGGCG 891 34 100.0 45 .................................. ATGTCAAAAGAAAATAAAACAGTCGTATTATACGATAGAAATAAG 970 34 100.0 44 .................................. CAGACCACATTTATATTAACGGTGAAAAATATGATTTCGCCGGG 1048 34 100.0 43 .................................. TGCAGGGTATCAATAAACGATACCAACTATTATTCACACCGCG 1125 34 97.1 45 ...............T.................. ACTAAATTCTTCGGTGAAGCGAAACACACTTCCAATAAATATTTG 1204 34 100.0 46 .................................. TGGTGAGCGTGGTGGTAAAAGATTAATTCATTCGCGGTTATTTGAG 1284 34 100.0 43 .................................. GGGTTATAAAAATGTTTGTGAATATTGTTCAGATGTTTTGGAG 1361 34 100.0 45 .................................. TTAAACGAAAGGATTTAAAACAATGACATTACATATAGACACAAG 1440 34 100.0 44 .................................. TAAACCATCTTTCAGATGTGAAAATTGGTTATTCTTTTAGTAGG 1518 34 100.0 45 .................................. CCACTTGCAAACCGTCAATAATTGCACCCTTTAACGTGCTATGGA 1597 34 100.0 44 .................................. CCCCGCTACGGCAACGCTTGTTTTGATTATCGCTTCCGTAAGTA 1675 34 100.0 45 .................................. AAGGAATTAAATTATTATGACACGTGCGGAACAATTGCAAGACAA 1754 34 100.0 43 .................................. TGAACAATATACTGACTATGCAAGCAACCACGCCCACGACTAA 1831 34 100.0 45 .................................. AAGTAAAAAACTTGGTTTTTAATAATCTTCTTAAAAGCACACTAA 1910 34 100.0 44 .................................. ATGAAAATGGTGATGAATATTTACGTATCGTATATAACAAAGAA 1988 34 100.0 45 .................................. ATCCACGCAATATCTTTGTATTTGGTCGTGATGGTGTAGCACATA 2067 34 100.0 44 .................................. GCGACATCTACGAAAGCGACAATATCGAAGATTTTAAAATCATA 2145 34 100.0 44 .................................. ATAAAAGAGGGTAAATAATGGAATATCTAAATATCATACAAAAA 2223 34 100.0 43 .................................. TAACGATAAGGCTAATTCTGAAAAAGCATTGTTAAAAGACCAA 2300 34 100.0 44 .................................. TCAATGCATACCATCTTATTAGAACACGAATATTTTAAGAAAGA 2378 34 100.0 43 .................................. TAATGAAAACTAAAGACAATATACAAAAGGTTATAAATTTAAA 2455 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ============================================== ================== 25 34 99.6 44 TTTCCGTCCCCATCAGGGGATTATTTAATTTAAC # Left flank : GAGATTTTATGGTGCGTCTATCATAGCCTAATTCACGACCTAGTAAACTATAATTAGGTTTCAAATTGCAAACCTCCAGAATGTCCCTTAATAATGGTAAGTCTAATAATGATGTTACAGTAAATGAACTGTTAATAGCGTATACGTATTGCATGTTGTTATCACCTCAACTATAGTATCGGTGATACAATTAAAATTGTACATTCTTATATCATCATTTTTGTACATTCTTAGAGTATCATTTACATAAAATATTTAACAGAATAAATCTAGCAACATAACAAAAGTAGCATTACTAACGTATAGACACAGATGGCATATGCCAATGGTCTATATTACTTATAGTAATGCTACTTTTTTATTGTAAATTACATCATAATCGAAACCTAGTCAAAGTTCAGGAGATATATAGAACAAATTTTGGAAAATGATATTTCAGGAATCCTTATATTCAAATAAAGCCTTATAGTAAGCCTAATAATTTTAACAAAGATAAATAG # Right flank : CCCTGTATCTGAAACAATAGATATTACCTAGTTCAAAATCACTATTAACGGCGGAGATCATAAATGAGCCTAAAACAGCACTTTAGCGTGCTAAAATAACACCTATAAATCGCGCCACTATCACAACGGCGGAGATTGTATTTCACAAGGTTATAATCTAGATATATTATAGCATAAAAAAACAAAAAAAATACAATAGTAGAATCACCAATGCCAGTACATTAGATATATGCAGCTAATCAAACAAAGATAATTCTACTATTGGTTATTAAATAATATTTCTAATCAATGCATTACAATATGATACAATCTTGCTCTTTTCGTTCGCCAATTCCCCATGTATAAATATTAATAATATCATCAAGTATATATACTCGTAGAGAATCCTCTACTGGATTAATAATTCGACTTGCCCGACGCATCATTACATCGTATTGTTTTCTATTGAGCAATGCCTCAAATGCAGATTTCTGAACACGTACGCCATATCGTTCTAAACA # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCCGTCCCCATCAGGGGATTATTTAATTTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.60,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA //