Array 1 223357-224472 **** Predicted by CRISPRDetect 2.4 *** >NZ_BONW01000016.1 Plantactinospora endophytica strain NBRC 110450 sequence16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 223357 29 96.6 33 .....................G....... CGCCCGGGACAGGCTTCGGGACATCTGCTTGCC 223419 29 96.6 32 .....................G....... GGCGTCTGCCTCCTGGAGCTGCCCGAGGCGGA 223480 29 93.1 32 .....................G......G GCTGGGCGCTTCACCCGGTGGTCTGCGGCCCC 223541 29 96.6 32 ............................G TCCCCCTCTGCACCCTCGGCCAGCAGCCAGCG 223602 29 96.6 32 ............................G AGGCGTCCACGTCTCGGCTGGCCGCGACCGCC 223663 29 96.6 32 ............................T GCCGAGCGTCCGGAAGACCGCGCGGACCTGCT 223724 29 96.6 20 ............................G ATTCAGAAGGGGGCGCGCGT Deletion [223773] 223773 29 72.4 32 TG..AA..AC...T..............T CGTGCTCGGCACACCCCTGGAGGCAGACGACA 223834 29 96.6 32 ............................G TAGTGCGCGCTGACTTCGCGCGGGCTAACGAA 223895 29 100.0 32 ............................. TGTACGAGCGCACCTCAGCCTGTTGGTGCTGG 223956 29 96.6 32 ...T......................... GAAACCCGAACCGAGGAGACGGACACCGTCAC 224017 29 100.0 32 ............................. AACAGCATGTTGGACTGCCACCAGGTGGTGGA 224078 29 96.6 32 ............................G ATCGGCTGGTCGCGACGGATCTCCCGCGCCGC 224139 29 100.0 32 ............................. CGGGATCCGCAGACCGGGCACCAGTGCCGGTC 224200 29 100.0 32 ............................. TGCCGACCGTGGTCACCGGCGCGGCCGTCGTC 224261 29 100.0 32 ............................. GGCGGCAGCGGCGCGGACATCGCCGCTGGCGT 224322 29 100.0 32 ............................. CGGGTGCGACAGTCGCATGAGGACTGGGTGCA 224383 29 89.7 27 ....................AA......A GGGTGCCCCGGACCTGTCGAAGCTGCT 224439 29 75.9 0 .C........T.TC..T....A......G | GTGCG [224445] ========== ====== ====== ====== ============================= ================================= ================== 19 29 94.8 31 CTGCTCCCCGCGCACGCGGGGTTGATCCC # Left flank : GTGTAGGGGTCTTCGCCCACCTTCGTCTCTGGCACGTGCGGGTTCATGCCCTTCGTCCAGACGTCCCGGCCCATCGTCTCGACCAGGTACTCGGCGGTCCGTTCCACCTCGCGGCGGGCCCGTCCCAGGTCGACGCCGACCAGCCGGTGCTCGTGCTTGACCAGTCGGCCGTCGACCAGGACGGTCTGCACGTCGGCGCGCTGCGCCTGGAAAGCCACGTGGCGGAATTGTGAGTGACGCTTCGTCCGTCCAACGGACGGTGCCGGGACGCAGATCCGAGCGGTGCCGTGCGTGGGCCGGTTCCTCCGGGAAGCTACAGCGGACATTCCGGAGCTGGAAGGTCAAGCCACGGCCTGCGGCGTGCTGGCCGTGTACGCTGCCCCCAGCCTTCGAATCATCGCGCACCACCGCCGTCGGCCTATCGCCATGGAGGCATGATCTTGCAAACGAAAGTGAATAAAATCGTCGTACTTGATCTCTAGGGCCGCAGGTCAAGAAGT # Right flank : GGTGGCGGAGTACGGGGCGGCGAGGCATCCGGCGTGCTTCCCGCCAATACCAGGATCGTCGCCCGCCCCGGATCGGGGAGGCGATCCGGGGCGGGTGGGGGCGATAAGGCAAGTCAGCGACGGCGGGGAAGCCAGTACAGGATCTGTCCGGCGATCAGCGCTGCATGGGTGTCGGGCAGTTCTTCCAGCGCGCGGGCCAGGTGCGCGCCGAGGTAGACCATCAGCCCAACCCGGTCACCCCGGAAAGAGGTCAGGAGTGCCAGGCGGGCGTGCCGGCACGGCCAGGGGGCGGCGCAGGCGTGGCAGGCGTACGCCCGCGTCGGGAGATGGTGTGCGCTCCGGGCGTGCTTCCGCCGTACGTGTCGGTACCAACGCTCCTGTGGGCCTATCACCAGTCATGCCCGTTCACCATGCCGGGCGCGGTGCGTCTGCGCCGAGGCGAGTGTTCCCGCACGCGCGTTCGCCAGATGTGGGCGGGTCGACGCGTCCCAACTGAGTCG # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:-0.04, 8:1, 9:0.46, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGTTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 226515-227115 **** Predicted by CRISPRDetect 2.4 *** >NZ_BONW01000016.1 Plantactinospora endophytica strain NBRC 110450 sequence16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================= ================== 226515 29 100.0 32 ............................. GCTAGTCGGCTCGGTAGTGCCGACCGGAGCCA 226576 29 100.0 32 ............................. GGTTCGCGCAGCCAGCAGAGAGCCGACCCACC 226637 29 96.6 32 ............................G TCCTGCGAGGCGAGTAGTCGAGGGGGTGCATG 226698 29 100.0 32 ............................. TGGAAGGCGCTCGGCTACGACTCGTGGGACTC 226759 29 100.0 32 ............................. CCACACCCGGCCGTCGAGTCGAACGCCTACGC 226820 29 96.6 32 ......G...................... GAGGTGTCGGTGACGGCGATCGAGTAGCCGGC 226881 29 100.0 32 ............................. GCGTGCGCAGCCGACCCCGACGACGATCCGTG 226942 28 93.1 33 ..........T......-........... CTCGGTCCAGCTGTACGCAACCTCAAGCCCGGA 227003 29 86.2 55 ........A.........CA........G ATTCATCACGTCACCCTTGACATCCTGGCCGGACGGGCACGGCAAGTCAGGCTTC 227086 29 79.3 0 ..A...T......C..AT.....A..... | G [227100] ========== ====== ====== ====== ============================= ======================================================= ================== 10 29 95.2 35 CTGCTCCCCGCGCACGCGGGGGTGATCCC # Left flank : TCCGGGGCTGGGCGGCCAGTTCATCATTGCCGAACTGAGCGATGGGCTACGCGCCGGGTACGCCGACAGTCAGGTGGCTGCGCACATCGTTGAGGGAGTCGAGGACGTTGCTACGCTGGCGGGTAGATGGGAGAGAATCCGCAGCTTTGCGCTCCCGAGCTCCGCCTCACTGGCACTCATAAAGGAAGCAGCCCAGCATGGATGACCTGGCCGGCGCCCACTGGCGCAAGAGCACCCGCAGTGGCAACAACGGCGGCGCCTGTGTCGAGGTTGCCGATAACCTTCCCGGCAGAGTGCTAGTTCGGGACAGTAAGGACCGCGAGGGCGGCTCCCTCGCATTCGACTCGGGCGCGTGGCGGGCGTTCGTGGACGGCGTGGCTCGCCGCCAGTAGTCGGGCCAAACGATGTGTCGCGCCCTTGCTCGCGAGCTCGGAATGATCTTGGGGACACTAGTGAACAAGATTGACGTACTTGATCTATAGGGCCGCAGGTCAAGAAGT # Right flank : CGCCGTACAGACTGGTTATCTCGTCATCGACGCCAGGTCGCCTCGCCATCGGTCACTGACCAACCGCCGACCCCGACCTGGGCGCCGGTCGCCAGACGGGTGGCAAGCTCGTGCCCGGCAGCCCCCGTCACCAGCAACAGGACGAGCGCGACCGCGACCAGTAGATCGACGCATGCGACGGTGTCTACTCCGCTCAAGCAACGGGGCGGCGTAGCAGGTACGTGTCCATGATCCAGCCTTTACGCTCCCGCGCGGCCCGGCGTACCTCGACGATCTCGGGGCCGACCTCGGCGAGCGGTCCAGCGACCAGGATTTCGTCCGGGGTACCCAGGTAGGCGCCCCAGTAGATCAGCACGTCCGGCTCGGTCACGGTGGTGAACGTGCAGTGCGCGTCGAGCATCACCACCAAATCGTCCACTCCGGACGGCCAGCCCTCGGCCAGTAGCCGTCCCGTGGTCACCTGGAACGGCCGGCCGACCCGGTTCAGTCCGATCCGGTGC # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:-0.08, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 124782-124510 **** Predicted by CRISPRDetect 2.4 *** >NZ_BONW01000042.1 Plantactinospora endophytica strain NBRC 110450 sequence42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 124781 28 100.0 33 ............................ CGTGGTGTTGGGCACCCCAATCTGGATCGTTCT 124720 28 96.4 33 ...........C................ GTACGGGGTCGGCTGTAGGAGGCCAATCCGGCC 124659 28 100.0 33 ............................ CCGCCACCGGTCGACGAGGTGCGTCACGGTGCC 124598 28 100.0 33 ............................ CGACTGGGACTCGGCCGGCCACTACGCGTAGGA 124537 28 92.9 0 .C............T............. | ========== ====== ====== ====== ============================ ================================= ================== 5 28 97.9 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : GGGTGAGCGTAGCGACCGCGCACCTTTGGCAAACTCCTCTGTTCTGCCGGCCGGGGCGGTGCCGACGCATCGGAATCGATGACTGATCGATTCGCTTTGTCGACCGTCGGTCGTCAGACGGTAGCCTTGGCGGTAGGTGTTGCCTAGCTGTCGCGAGAGTGGACATAGGTCACCGGTCGAGGAGGTCGATGACAGCCGAACTGATAGTGTCGCTGTCGCTCACAGCTCGATCTGCACGTACGTCGTGGGCCTCGACGGTAGTAGCGACGAATGTGCCAGTTACCGCGTTAGCTGACCCGTACGGGCAGGGTCGCCAGTCCACGGACGACGGGGGAGGGGAGCCGGTTCAGCTCGTCCGGGGCGCAGGCGAGGCTGAGGTTGGGGAGCCGGTACAGCAGCGCACACCGCACGCCGAGGCGCGGTAAGCAAGGAGATTGATCCTGCGGACCAAAGTGAAGAAAAATGATGGAGTTGATCTTTAGCGCAGCAGGTCAGGAAGT # Right flank : GGTGCAAGTTACCTACGCGAGCAGCGCGGTCAGCACGTCGTCCGGATCACCGCTACGCGACTGGGCACGCTTGCGCGCCACCAGCTCGACGACGTACTCCCGCAGCAGCCGGCGACCCTCCTCGCGGGACATCGGGGCGTCGGTCACGAACGGCGGACGCATCGCCGCGACGGTCCAGGTCCGGAACCGGCCATGATCGATCGACGGTACCCCGAGCAGCTCGGCGATGACGGTGAGCGACAACGGGTACGCGTAGTCTTCGATCAGGTCTGCGGTCTGCCGCTCGGCGACGGCGTCGAGCAGGTCGTCGGCGATCTGCTGGGTCCGTTCCCGCAGCTCGGCCACCCGTCGCGCCGTGAACGCCCGGCCCACCAGCGCCCGCAGTCTGGTGTGCTCTGGCGGGTCGGTGGTGTGCAGGTCGAAGGTCGCGTCGCCCGGCTCACCGGTGACCACCCCGGCCGCCCGCAGCGCGTCCCAGGCGCGGCGGGGATCCTTCGACA # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 2 133842-133156 **** Predicted by CRISPRDetect 2.4 *** >NZ_BONW01000042.1 Plantactinospora endophytica strain NBRC 110450 sequence42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================================== ================== 133841 28 100.0 33 ............................ AGCCAAAGTGAGCATTCACAGCAACCAGAAACA 133780 28 100.0 33 ............................ TCTGGGCAACGCGCTTGGCTTCACGCGAGAAGC 133719 28 100.0 33 ............................ ACATTCTTCATTACTCTAGAACCACGTCGATCC 133658 28 96.4 33 ..........................T. GCAGATCGTGACCTCCCGCCCCTTGAGCCGGAC 133597 27 96.4 33 .................-.......... CATCTCTTCCTCCTTCACGGCCAACAGGCCGAT 133537 28 96.4 33 ................T........... GAAGCTGCCGTCCGGGTACGCGCCGCTGCTCAG 133476 28 92.9 21 ......T.................C... GTGCGGTACCGACTTGGCCCG G,CGCTA [133445,133454] Deletion [133428] 133421 28 96.4 90 .................C.......... GGGCTGGCCGGACGGCGCCCGGGAGGGCCGCGATTGCTCCCCGCGCGCGGGTGATCCCTCCAGGCAGACTTGCCGGCATTCACCACGGCA 133303 28 96.4 33 ......................C..... CGCCGGGTAGAGCCGGCGGCCGTCGTTGTCCTT 133242 28 100.0 33 ............................ GGCCGCCCGGACGGCGCTGGAGGCGGACATGCA 133181 26 82.1 0 ....-.............A..-..CC.. | ========== ====== ====== ====== ============================ ========================================================================================== ================== 11 28 96.1 38 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : GGCGTAAGTCAACGCGTAGCGACAGCGGGACCTGCGTCGAGGTAGCCGACAACCTCCCCGGCCGCGTCCTCGTACGCGACAGCAAGGACCCGCAGGGGCCAGTCCTGACGTTCAACCCTCAACCGTGGCGCGGGTTCGTCGCTCTCACGAGGCACGGGCAACTGTCCTCGTAGGTTCTTTGTGCTCTGACGATGTCGCGTGAATCGCCGATCCGAGCTATCGCACCCTTTGTGTACGAAGCCGGCGATCCACCTCCGACCGTCGGATGTGGGTAACCGGCTGGCGCCCGACTGAAATGTCCCGTGCCAGTCCGTACGAACGCTGACAGCTTGCTGTGCCCGGAGATTCAGTCGCTGGGCACCGCCCAGGTCCCTGTACGCTGAATTCAGGCTTCAAGCTAGCCACACCACACGCTCGGGCGTGGTTCCAGGAGGATGATCTTGCGGACCAAAGTGAAGAAAAATGGCGCAGATGATCTTTAGCGCCCCAGGTCAAGAAGT # Right flank : CGTCCCTCTGCTTGTCTGCGATGTACGAGCCCTGCTCGCCACGCAAGTCGCCAGTTACACCCGGCTCGAATGTCTCCGTGTTTCGTCCGAGCCGGGCGGCGTCCCGCCGAGTCCCGGCACAATAGTCGGCTGGTCGGCGGATGTCAGGCGGCGGTGCAGGACCTGACCAGTGGTCGGGCGCCGGAGTTGCCTGTAGTCGCAGCGGCGAAGTTGTTGCCGTGGCTACCAGTGGACGTGAGACCTGCCCCTGACGGTCGGTGTTGCCTGTCTGTCACGGGAGCGGGCACAGATCACCGGCCGGGAGGTCGACGATGGCCGAACTGACAGCGCCGCCGTCGCTCACCGCGCGATTCGCGCGATTCGCGATCAGGGTAGACGCCGAGGGAAAGCGGCGCGGCGCCCTCCCTCGGACCGGTCACACACCAACGCCCTGTCGACTTTCCGCGTCACGGCCGACGAGTCACCGCCCGGACCGGCAGCACCGCGCTGATGCGCGACGG # Questionable array : NO Score: 5.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.54, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 1 82432-83554 **** Predicted by CRISPRDetect 2.4 *** >NZ_BONW01000050.1 Plantactinospora endophytica strain NBRC 110450 sequence50, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 82432 37 97.3 34 ....................................G CGTGCACGTCACCGTCGCGGACGACCGGCACCAC 82503 37 100.0 36 ..................................... CTCCCGCAGTTCGCGGACAGCGGCAGCGGCCGGAGC 82576 37 100.0 34 ..................................... ACGAAGTGGAGTACGTGGAAGTTGACCGTCCAAC 82647 37 100.0 37 ..................................... TCACAATGCGATGATCTAGTTAGCGTTCCGTTACTGC 82721 37 100.0 35 ..................................... TACGCGCTGCTGATGGAGCGCCGGGCGGCCCGCCG 82793 37 100.0 34 ..................................... GCGGTCAAGGCGGCGGCCGGCGGCGGCTGGCGGG 82864 37 97.3 35 .........G........................... CTGCGTGCCGACCATGGCGCTGACCAGTTCGCCGG 82936 37 100.0 35 ..................................... GCCCACCGCTGCGGCGGATACCTCGCCAGCCCTCG 83008 37 100.0 34 ..................................... GCGCTGGCCGCGTTCGATGACCGGCAGGTCCTCG 83079 37 100.0 38 ..................................... GCACATGGCGGGGCCTGGCGCCGACGACGCCCCAGCGG 83154 37 97.3 36 ......G.............................. TCCAGCGCGGCGACGTTGCGCACGAACTGGTCGTCG 83227 37 100.0 38 ..................................... GCGGCCGCGTGCATCCGCCGTGAGGTCGGCGTCCGCGC 83302 37 100.0 35 ..................................... TCGCTCTTCCACTGCTCGTGCTCAACCGGCCGGCC 83374 37 100.0 35 ..................................... CGCCCCGCCGTGCTGCCCGGCCCGGCCCCGATCGA 83446 37 100.0 35 ..................................... CGGTCAAGTCGGGCGCCGTTGGCGGTAGCGATCAG 83518 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 16 37 99.5 35 CCAGCACCGACGGCTCGCCGTCGGTGAGGATCTCAAC # Left flank : ATCACCGGCCACGGCCCGACCCTGTACCAGGGCGGGCTGCCCGCAACGCGACAGCTCGAACTGCTCTCGACGGAGCCGCTCCGCAACGGCGCGGTGGCCATGCACTACCGCCGCGCGCTGAAGCACCGGGGGTCCATCGCCGCCAGCTCACCGGCAGCGCGGCGTTGAAGGGTATGGCCTCCGGGTACAGAAGTCCGTCCTCGAGGTGACCTGCACTCAATGCCCGTGATGCGTCGGAACTCACCGATACCATCAACCACACGCGCGACGACATTCGGCTGTCGACCGGCAGCAGGCACCCTGCAGGCAGTCGAGCGACTCGCCGTTGCCCAGCTCGCGCCTCACGAAGGCGATCACCTGTTGTGAATGATCTAGGAACCCTAAGCTCGACGATGCCGAGCGTTCGGCTCCACGTTCCAATTCGGTCCGTACTGGACAAAACGCCGCCTTGTTTCGCTGGAGACGATCTTCAACATTGTTCCTTGCCTGACCAGGAAGCC # Right flank : CAAGCATGCGGTGCTTCGGCCGGGGCTGCGGGTCCTGGCCGACGGCTGTCCTATCTGAAACCTCGAGGCCGTTGATCACCGGAGTCCCCTGCACCCGCTCCGGGGATCAAGATTGGCTTGGAGGGGTTGAGTATCCGAATGTCTTGTATTTGACAGTCGGGTATGACGCTTCGGTTTTGTCGTAGGGGTGTGGTTGGGTGCCCGTGTTGTCGGTTGTGAGGAGCATTCTCGGTGTGGGCGCACAGTGTGAACAAGATCGGACTCCGCCATCGCCTCGAAGATCACCTTCGAGGTACGGCTGAATTGGCGCGGCGTTTCGCGGCGCCGTTCTTGTTCAGTGAGCTTGCCTGGTGGACTGGTCTTGTCCACGATGGAGGGAAGGCGTGGTGTGCTTGGCAGGACAAGTTGCTCTTGGTGGAGCCGACGAATGGCCGTGTCGGGTTGGATCACAAGTCGTTTGGTGTGCAACTTGCCCGGCAATTCGGGCTCCGGCCGGTGGA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCACCGACGGCTCGCCGTCGGTGAGGATCTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-14.00,-13.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 2 92358-96121 **** Predicted by CRISPRDetect 2.4 *** >NZ_BONW01000050.1 Plantactinospora endophytica strain NBRC 110450 sequence50, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 92358 37 100.0 36 ..................................... TGGACGGGCACGAGCCGGGCGGCGGCCTCGCTGGCG 92431 37 100.0 34 ..................................... CGCGTTCAGGGTCTGTTGCAGGGCCGGGAGGTGC 92502 37 100.0 39 ..................................... ATGATGATCTCCCTACTGTTGTTGGTGGTGCTGTCGGAT 92578 37 100.0 35 ..................................... CACCACGGCTCCCCGCACAGCGGGAGGAGCCCCGC 92650 37 100.0 37 ..................................... GCAGATCACGCGAGCATGTCAGGCGGGCAGGTCGCGC 92724 37 100.0 37 ..................................... TCCGCCGTCGCCGACGATCACCGAGCCGCCCCGGGTG 92798 37 100.0 39 ..................................... TGCTCACTCACAGTCAGCTCACCTCCTGCGTGGTGCCAG 92874 37 100.0 33 ..................................... TCGGCTGCGGCGTACAGCCCACCGACCGCGAGG 92944 37 100.0 38 ..................................... ATCGCGCACCCGCCCCAGGTGGCCCGGCCGGCGCAAGT 93019 37 100.0 35 ..................................... GGCGTCCGGGTCGTCGATGTTGCTCCACGCCTCCG 93091 37 100.0 38 ..................................... TGCGGTTGGACCAGGACGGCGTAGGCCGACGTCCCCCA 93166 37 100.0 37 ..................................... ATCGCCTGGTTGTAGACCGCGATCCGGATCCGGGGCG 93240 37 100.0 34 ..................................... GGCCTGGTCACGGCGGCTCCGGAGGGGTCTTTGG 93311 37 100.0 34 ..................................... TCCGTCCGTACTGGGAGGCCGAGTGGGCCAGCGA 93382 37 100.0 36 ..................................... GCATACCAGTCCGGCAGGGCCCGCCGCGGCATGCTG 93455 37 100.0 36 ..................................... CGCCGGCCGATACCGGATCCCAACACGACCCGGCCA 93528 37 100.0 36 ..................................... CGTCGTTGGCGGGCTCTCGGCTGGACGCCGGAGCAG 93601 37 100.0 34 ..................................... GTCGTGGCGGGCGTCGCCGAGGGTGGCGCCGCAG 93672 37 100.0 36 ..................................... GATGAGATAAGGATGCTCGTCACATCCTCCGAGTCA 93745 37 100.0 34 ..................................... TTCGCGGTCGGTTTGTACGCGTGGACGATCACAG 93816 37 100.0 34 ..................................... TGGTCGACCGGCACCGCCAGGAGTGGACCCGGCA 93887 37 100.0 39 ..................................... GATGTTCCGCCATGTGTCCTCGTTGCCGCACACCCGGCA 93963 37 100.0 37 ..................................... CGTCGCCCTGGTCGGCGGCGAGGACGGCGGGGTCAAG 94037 37 100.0 38 ..................................... CAGTTGCGGGTGGTCCGGCACGTCATCACCGAAGCCGT 94112 37 100.0 37 ..................................... TGGCGGTATCGGCGAGCGTGGCCGGCGGGTCCTCGGC 94186 37 100.0 36 ..................................... AAGGCGAGCGGCCTCGACATGCGCGAGTTTGAAAAG 94259 37 100.0 37 ..................................... ACCTCCTCTGTCCAGAGGCCCTGCGGATGGAGGTGGT 94333 37 100.0 36 ..................................... GCGGTCACGTGGCGGGTGCTGGTCTTCCTGCCGCAG 94406 37 100.0 36 ..................................... ATCGACACCCCGCCGATCGACGCCGTCGTCCAGGAG 94479 37 100.0 38 ..................................... GTGAGCCGGTCGGGTGTCCGAACTGGGAGGGGTGTCGG 94554 37 100.0 35 ..................................... TCCGCCATCGCGGCCAGCGCCGGAGCGATCTTGTC 94626 37 100.0 36 ..................................... GTACCGGCGCCACTGACCGCGCTCGGTCTGCCCGCC 94699 37 100.0 39 ..................................... CTCGACCAGGGCCAGCTCGACCCGGTGGTCGACGTCCTG 94775 37 100.0 35 ..................................... ACCACCGACAACCCAGCCAGCGCGGACGCGATCCG 94847 37 100.0 39 ..................................... AGCGACGGCCGCTACGACACGGCCGCCCGGGTGGTGCGG 94923 37 100.0 33 ..................................... GCCGTCCAGTCCCCGGTCGGCGTCTGCCCCATG 94993 37 100.0 36 ..................................... TCGGTGCCTCGCGGCTTTCGGGGCCGGCTCGGGCGG 95066 37 100.0 35 ..................................... GCGAACGACGACCCGATGGCTCCGACAACCTGGAG 95138 37 100.0 37 ..................................... TCTACATCCGGCAATCCATCACCCGCGTCAAGCGCGA 95212 37 100.0 35 ..................................... GAGTGGCAGGCGCCGTCGGGGAGGGCCGTGCGGGA 95284 37 100.0 37 ..................................... TTCAGGGCTTGTTCGACGGCTCGGCGGCCGGCGGCGC 95358 37 100.0 34 ..................................... GCCACCGTGCGGCCGGTGGCGTTGCAGGTGCACC 95429 37 100.0 37 ..................................... GTGATCGCGGCGCCGTCGCCGGCGCCGGAGATCTCGG 95503 37 100.0 38 ..................................... GCCACGATCACGGAGACCAGCCACGCGGCGGCGGCCAG 95578 37 100.0 35 ..................................... CACACGTCCGGCGGCGCGGTGAAGATCTCCCGGAA 95650 37 100.0 34 ..................................... CGTGCCTCCGCACCCGCGAGGGCCGCCGCGTGAG 95721 37 100.0 34 ..................................... ATGAACAGCGCCCTTCCCGCTGCGGACGCGCAAG 95792 37 100.0 38 ..................................... CCGGAGGAAGAAGACATATCCGCTGTACTGGTCGGGGG 95867 37 97.3 34 ...............................T..... ATGTCCAGTCCGACTGAGGCGACAACCGGTCGGC 95938 37 100.0 38 ..................................... GCCGCCGCCGTGTCCGGGTCCGCCGCTCTCGACGTCAC 96013 37 97.3 35 ....................................T GGCACCCCGTGACCTGGGAAAACTCCGGGGGAGGG 96085 37 94.6 0 ......T.............................T | ========== ====== ====== ====== ===================================== ======================================= ================== 52 37 99.8 36 CCAGCACCGGCGGCTCGCCGTCGGTGAGGATCTCAAC # Left flank : CCATCATCCAAGCACGCCTACTCGCCCGACATCTGCGCGGTGACATGCCTCGCTACACACCGTGGAGTCCCGCCTGATGGAGTATCTCGTCACTTACGATGTCGACACCACGACGCCAGAGGGACAGCGGCGACTCCGCCGGGTCGCGAAGGTCTGTGAAGGGTATGGCCTCCGGGTACAGAAGTCCGTCTTCGAGGTGACCTGCACCGACGCCCAGATGCTCGTGATGCGCCAGAAACTCACCGACATCATCAACCGCACGACCGACGACATCCGGCTGTACCGACTGGCAGCAGGCACCCTGCAGACAGTCGAGCGACTCGGCGTTGCCGAGCTCGCGCCTCACAGAGGCGACCACCTGTTGTGAATGATCTAGGAACCCTAAGCTCGACGATGCCGAGCGTTGGGTTCCGGGGTTCAATTCGGTCCGTACTGGATGAAACGCCGCCTGGCCTCGCTGAAAACGATCTTTATCGTTGTTCCTTGCCTGGCCAGGAAGC # Right flank : TTTGACCGCGCGGCGTGCATACGCCTTCCGCAGCTCCGGCCATCGGTCAGGGATCATGGGCAGAGCTGTGGGAGTGCCGGTTCGGTACGCTGACCGCGACTTTGGAGACGGCTGGCGAACGGCGGTGTGCGGCTTGCCTGGCGGCAACTGGTGGGTCGACGACCCGATCGACAAGCCGAGCGATGACCTGTTCGGGCGCGGCCCGTTCGTAGCCCGCGCGGTCGCCTTGCTTACCCAGATCGGCTCCCGGCCCAGCAGCACGGTGGTGGGGTTGGTCGGCCCGTGGGGCAGCGGTAAGACCAGCACGATCCAGATGATCGTGGCGGCACTCGCCCCTGAGCGGTGGGGCGTTAGTTGGATCAACCCGTGGGCGTTGTCCGGTCCCGACGCGGTCGTCACCGAGCTGCTCGGCGCGATCCGGACCGCGGTGCCGGAGAAGTCCACCGCCGGCGCGCGGGTCCGGCGTGCGCTTTCCCGGTACGGCGCCCTGGCCACGCCAG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCACCGGCGGCTCGCCGTCGGTGAGGATCTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA //