Array 1 1598-27 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCQS010000047.1 [Clostridium] scindens strain DFI.1.130 MFEFCHDH_47, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 1597 33 100.0 34 ................................. GTCCTTATGTGCCGCTGTAGATTTCTGGATACTG 1530 33 100.0 35 ................................. CTCTATTCCGGCTACCGGGCGAACTCCCAGTAATG 1462 33 100.0 33 ................................. TACTACAGTAGTTAGCCATAGAGGCTTGACTAT 1396 33 100.0 35 ................................. TCGCACAACTTTCGCTCCTGGGAAGTGTGGCTGAA 1328 33 100.0 33 ................................. TACTTCCTGCTCGAATTCCTTTACCATATTCTC 1262 33 100.0 35 ................................. CCTGACTCCCTCCCCGTATACTATTACCGTGCCCG 1194 33 100.0 34 ................................. TCCAGTATCCCCCATCCCTGGTCCATATCTGGAT 1127 33 100.0 35 ................................. ACCCAATAAGACACAGGTAGCATGTCAAGCACAGG 1059 33 100.0 33 ................................. TCAGATATGTGGATATCTTCACAAACTTATTCA 993 33 100.0 34 ................................. CAGGGTAGAGAGGGCGATCAGGCACGCATTCGCG 926 33 100.0 34 ................................. GCACAGCATTACGTGTGCGAGGGAGAGACTCAGT 859 33 100.0 34 ................................. TCCACGGATGTTGTACCACTGCTCCGGTTCTACC 792 33 100.0 35 ................................. TCAAAATCAATCGTGACATTGTTGATCAGCACATC 724 33 100.0 33 ................................. ATTTATGTTGCACTCTGGGGGCTCGTCCCCTTG 658 33 100.0 33 ................................. ATTTCCCTGCTGTCCCCATGGGAAGGAATATCC 592 33 100.0 35 ................................. AGACTCAGAGAAGAAGCGGGAGGCTTTCCGGGAAG 524 33 100.0 34 ................................. CATGATCTGGCAGGGTATATCACTAAGACGCCGG 457 33 100.0 33 ................................. TGAGGATAGGAACAGATTCACAGGGTATAAGTA 391 33 100.0 33 ................................. TGAATACATCCCCTCGATCTCTTCGAGTATCAG 325 33 100.0 33 ................................. GATTGGAAGCACTGCTTCCTTTCCTGCTTCTCC 259 33 100.0 33 ................................. GATAAAGGCAATGTGCAGACGGCCACGCAGATA 193 33 100.0 33 ................................. CAATGGAATGGGGATTGATGTAGACGCATTATT 127 33 97.0 35 ....................T............ AGACTTAATAAGAATATTAACTTAAGGACGAAGCA 59 33 97.0 0 ...T............................. | ========== ====== ====== ====== ================================= =================================== ================== 24 33 99.8 34 GTCGTTCCCTACATTGGGAACGTGGATTGAAAT # Left flank : ACAAGTTAGGCCTTAACTATGTATCTTGCTCACCATTCCGCGTGCCGATCGCAAGACTGGCTGCAGCACAGGCTGCAATCGCAGAAAAGAATGCATAATTAAATTACAAGATATTCTGACGCAGGGGTAGTATGCCTCTGCGTCTTTTCGATATTGAGGAAAATAAATTTAATAAAGTTCAGCAAGAATAGCAGTCAGCAACGTAATGTACTTAAGAAAATTCGCAATCGAAGCCATTCTTGAAGCCTTAGTTATCAGAAAGGCTTATCAAAGTCTTGGGAAAAATAAAAAGTAGTAGAGGAAATTTGAAGATTAGATAGCAATTTGGTAGTGCGAATATGAAGTATACATAAAAATCCCGGGAGATTCGCACCAAAAAAGTTGCACAAAAATTGAGTATTGTATTACAATATAGATTAAAGAGGAAAAGATATTAAAAGAAAACCGTAATATGTTACAAATATAATGTTGTTTAAGATTGATATTTGGATATGTTTGCT # Right flank : TCAATGGAATGGGGATTGATGTAGACG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTTCCCTACATTGGGAACGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 1 32820-33790 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCQS010000037.1 [Clostridium] scindens strain DFI.1.130 MFEFCHDH_37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 32820 33 100.0 34 ................................. GGATCATCTGGAACTTGAGACATACCAGGGCTGC 32887 33 100.0 33 ................................. AAAGAGCAAGAAAGTCAGGCAGACAAAAACTCC 32953 33 100.0 34 ................................. GGCTGCCGGCATGCAGGCCATGCAGGGCCTGACA 33020 33 100.0 33 ................................. ATCCAGTGTTATTTCGCCTCTGCCACAAATACC 33086 33 100.0 35 ................................. TGCGCTCATGCACATCGGCTCGCCTGTCTCAGCAT 33154 33 100.0 35 ................................. CTGCACTCAATCCCATTTGCTGGAGACGAGCTGCA 33222 33 100.0 36 ................................. ATGCCAAGCGTCTTTCGCAGCTTGTGTGGATATACG 33291 33 100.0 33 ................................. CGCTTGAAGGATGGAATACTGATCGTCTTGGAT 33357 33 100.0 33 ................................. CATAATAGATTGCAATATTTCATAAAAATACAA 33423 33 100.0 35 ................................. GGATATTGCTGATAAGTAGACTTACAAGCATGAAC 33491 33 100.0 35 ................................. CATCATTCGTGATTTGAAAATGCGCCAGCGCCATT 33559 33 100.0 33 ................................. TTATCCAAGCGTAGACGATATATGCCTGATCCT 33625 33 97.0 33 .....T........................... GTGTCATTAAGATAGGCAAAGTTTATAGAATCC 33691 33 100.0 34 ................................. TTGGATATGATCTATTAGGTCCTGATAGTTTTTC 33758 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 15 33 99.8 34 GTCTCCCTCTGCGAGGAGGGAGTGGATTGAAAT # Left flank : TAAAAAGCGCCTCTAAAAAATATAAAGATTGTGAAAAGGCTTATGGGTTTGACATGGAAATTCCCAATAGAGAAATGATTGTAAGAAATGGAAAAGAAGTAGAACTGCCTGCCAAGGGGCCATATTCTGATGAGAAGACCAAGCCGTGGAGTAAATGGTCGAAAGAAGAATATGATGATTTCCAAAAAGAATTAAAAAAGAGGATAAAAGATAAATTTCCAGGAACGTTTCCGATAGAGTGGGAAGGATCAGCCTGGATCGAAATAGCGAAAAAGCGGAAATAATTGTGGGCTTGGGACTGGTTTGAAGAAATTGGAAATATGGTTCAGGTGCGAATGGTAAGTGCACATAAAATGCGTGGGGGATTCGCACCTGGAAAAAGGGGTTAATTTGGAGAAAAGGTTAGAAAAAATTAATTTTAAAGAAGGATTTGCTTGAGTTATTGTGGGTTTTGTGTGTAATATGTAAGTGGGCAAGAGGTATTTTTGTGCGTTTTTGCT # Right flank : TTTTTTGGCTGTTACGGAATGAGGATCGGGATAGCTTCCCTCTCGAGGTAAAGTGGATTGAAATTCCTGGTAACTGGTGCCATATGAAAAAGATGTTAATGAACTTCGCGGCCAATACATGATATATCCTAAAATACATAAAATCCTTTGTGAAAAAGGTTATGCTGTAAGCATTGCTTCCCTTAAGATTATTATGCAAAAGGAAAGAGCACGGATGTATGAGCATAGGAAGAAAGCAAGGAACAGTCTAAATTTATTCAGAGAAAATCTTTATGTCAATTAATTTATAAAAAATATAGAAGATGTTATAACGATACCTCAAAACAATATGAAGAAGTATTGAAAGAATATCCTCAACTAGGACAAATATATTCTTTGGTTAAAGATTTTTACAGTGTGATTTTTTCCAAAAAGCCAGAAATATTAGATGACTGGATAGAGTTTGCTCAAAAATGTGATATACCTGAATTACAGACATTTCTTGAAGGATCCTTTCGAGA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCCTCTGCGAGGAGGGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTCCCTCTGCGAGGAGGGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.60,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 7599-6773 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCQS010000050.1 [Clostridium] scindens strain DFI.1.130 MFEFCHDH_50, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 7598 32 100.0 35 ................................ ATCCTCCAATGCTTGACAACAATGATCCCGTCATC 7531 32 100.0 34 ................................ CGCAATCATCTGCATTTTAAAACCGCACACAGGG 7465 32 100.0 34 ................................ TGTTTTACCCTCCTTGATTTCCTCTATTCCGGCT 7399 32 100.0 35 ................................ TCTGCCCGATCGCTCTCCGTCTCAGCGGCGGATAT 7332 32 100.0 35 ................................ CTCAGATCAATCAGGTGTTTCTTGCAATTGTTGTA 7265 32 100.0 33 ................................ ACTGACATCCTCCTTGTCATCTTTCGTAATTTC 7200 32 100.0 34 ................................ TGAAACCATGCTTTCAGCTGCGCAAGGCTGTTGG 7134 32 100.0 35 ................................ TCGTTGGATTTGACACAAGAAGAATTAGAGCGGCT 7067 32 100.0 34 ................................ AGGTATGCGACTGCTGCCATCTTATGTTTTTCGC 7001 32 96.9 34 .............C.................. TCGTCATCCCATCCCATCTGCGAAAGTTCCAGGA 6935 32 100.0 34 ................................ ATCTAAGAACTGTTTAATAGCAGCATTGCATTCT 6869 32 96.9 33 .............C.................. CTGCTCCTGGCAGTCGCACTGCTCGCCAGGATC 6804 32 71.9 0 ....A.....ACA........CAA....G.T. | ========== ====== ====== ====== ================================ =================================== ================== 13 32 97.4 34 GTCGTTCCCCTTGTGGGAACGTGGATTGAAAT # Left flank : GGATGCATATCCGCCATTTTTATGGAAGTGAGGTGACATTATGCTGGTATTGATCACATATGACGTTAATACAGAGACAGCGGCCGGAAGAGCAAGACTAAGGAAGGTTGCCAAGCAATGTGTCAATTATGGAAGGCGTGTTCAGAACTCGGTCTTTGAATGTATTTTGGACAATGCACAGTGTGTAATGCTGAAATCTACTTTGATGGAAATTATTGATGAAGAAGTGGATAGTTTGAGATTTTATTATCTGGGAAATAAATACAAGACAAAAGTAGAGCATGTGGGAGTCGATAAAGGGATTGCTGTGGATGAAACATTGATTCTGTAGTGCGAATGTGAAGCACACATGAAAATCCCGGGAGATTCGCACCAAAAAAGTTGCACAAAAACTGTAAGTTATATTAGGATATTAATTAAATATCAAATCATATCTAAAGAAAATGTAATTTACTACAAAACATATTACTATTTTCTTTTGAAATTTGGATATATTTGCT # Right flank : ATTACCATAGTAGATATAGGCGCCCCTGTACAAGGTTGATCCACTTGTGAGAATCAGAATATAGATACCTCTTAATGGGCATAATAGTTTGATTGTTTACCGCAACAAAAAGCAAGGCCTATTTTAAACAAACCATACTACGAAGTTATTAAAAATTAACTAACATGTTTAATTCATAATGATACATTTAAAGGGGAATAAAAGTGATTTTACGCAGAAATGCGAAAAGATTTATCAGTTTTGCATATATAGAGCAAATGCCCATAGTTCAGGGCGGCGGAGATTTTTCTCCGCCGCCCTGATTACAATACCAAGCCAAGCACCTACATCGCAGCATTAATTGCAGCCACAGCGCCATCTGCCACGGCTGTTGCAGCCTGGCGTACCTGCTTGACGCGGATATCGCCAGCAGCATATACGCCGGGAATGGAGGTTTCCATTTTTTCATTCACCGGAATATATCCGTTGTCTAACTTAAGTTCCGTATATAATTCGGTATT # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTTCCCCTTGTGGGAACGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.40,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : NA //