Array 1 571-3 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQXO01000076.1 Acinetobacter baumannii strain MCR6739 NODE_125_length_6816_cov_15.341843, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 570 28 100.0 32 ............................ AACTCATACAGCGGGTCCAAGAGCCTATGGTA 510 28 100.0 32 ............................ AAGACCAGTTTTGAAGGATATTAACTTTTTAT 450 28 100.0 32 ............................ TCGTGCTTGGGTATCACATATTGATGTGACTT 390 28 100.0 32 ............................ CACTAATCTCTTTGATTTAATTAAGTTTCAAC 330 28 100.0 32 ............................ ATCCGCATCATCAAAAATCGCAAGTGGGTTTG 270 28 100.0 32 ............................ AATAACGACGGTTGCGCTGTTGCACGTTCAGC 210 28 100.0 32 ............................ TTGATGAGAAACTGTTATTGTGTATGTCTCAC 150 28 100.0 32 ............................ ACGACAGGTAAATTGGTTGCCATGTGTATTGA 90 28 100.0 32 ............................ AATTGTAGAAAGCGTATCACTTATTTGCTTAT 30 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 10 28 100.0 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : AAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 5661-6890 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQXO01000076.1 Acinetobacter baumannii strain MCR6739 NODE_125_length_6816_cov_15.341843, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 5661 28 100.0 32 ............................ TAATAAGCCATATGATGTTGATGTAAGCCAGA 5721 28 100.0 32 ............................ TTATTGTGAGCACCTTGATTGCTGTGCGCTGC 5781 28 100.0 32 ............................ TACAGCGGGAAACTTGAAAGTCATTGCGAAAT 5841 28 100.0 32 ............................ TGATTGCCCCCTGAGGAAACTGTATAAAGTCC 5901 28 100.0 32 ............................ AAACACCAACTAAGCCATTCCCTATTCAAAAA 5961 28 100.0 32 ............................ ATGAACTTTTAATGGATGCATGCGCCGCCCAC 6021 28 100.0 32 ............................ ACGAACAACGATAATTTGGAATACACGCTCAT 6081 28 100.0 32 ............................ TCAGGAGAAAGATCGTTCAAAAGCTCAAAACC 6141 28 100.0 32 ............................ TGAAAGTTTTGATATCCACTCTGCTGTTTCAA 6201 28 100.0 32 ............................ AGATGGTAAGAAAATTATTGAGTCTGGAGACA 6261 28 100.0 32 ............................ CGACAGTCCAGTTGATCAGATCTTGATTAGAC 6321 28 100.0 32 ............................ AATGACATGGTTCAACAATTAAATTCATCTCA 6381 28 100.0 32 ............................ GTTCTTTTCTGCAATATGTGCCATTAGGTATT 6441 28 100.0 32 ............................ ATTTTAGATGAAACAAAAGATAGCAGGATTAT 6501 28 100.0 32 ............................ AGACCAAGCGGATTGACCGTATTGATAAATAA 6561 28 100.0 32 ............................ TTCTGCAATACAAATCACTGGATCAGCCAGGT 6621 28 100.0 32 ............................ TGAGTCTTTGATTTCCCAAATATTACTTGAAA 6681 28 100.0 34 ............................ CCTGAAAAATTTCACTGTGTCCATTTCGTTATTA 6743 28 100.0 32 ............................ TATGTCTTTAAATTCTGAAAAAACACTTGTTC 6803 28 100.0 32 ............................ GAAAAAATTGAAAACTTTTTAGAAGTAAATGA 6863 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 21 28 100.0 32 GTTCGTCATCGCCCAGATGATTTAGAAA # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACTTTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : GCCACACATGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCGTCATCGCCCAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 136753-136014 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQXO01000005.1 Acinetobacter baumannii strain MCR6739 NODE_13_length_136666_cov_28.698513, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 136752 24 85.7 32 ----........................ ATAATCACGAATATCACCAGTAAACCAGTGAT 136696 28 100.0 32 ............................ TTATTGGTCCTGGTCAGTGGAATGGTGATTCT 136636 28 100.0 32 ............................ TGGGTAAAAGCCGATGGATTAATCATCTTTTG 136576 28 100.0 32 ............................ ATTAACAAGAGTGGAATTTATTGAACTATTAA 136516 28 100.0 32 ............................ TCTGGGTTCTTTTCGCGTGTATGGGATACTTG 136456 28 100.0 32 ............................ TGTAAAGTCATTCGTAATAACCGTTATACGGC 136396 28 100.0 32 ............................ AAAACCAATCAAATAACGGTTATGTGGCCACA 136336 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 136276 28 96.4 32 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 136216 28 78.6 27 ....C.....CTCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 136161 28 92.9 32 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGAT 136101 28 89.3 33 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 136040 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 13 28 94.5 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : | # Right flank : GAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGCA # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.00, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 749-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQXO01000115.1 Acinetobacter baumannii strain MCR6739 NODE_200_length_684_cov_12.374269, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 748 29 100.0 31 ............................. TCAGTTGGATATGCCTTTGATACCAAGAAAC 688 29 96.6 31 ............................G CCTGCAGACACGGATTTACGCAGCTGATCGA 628 29 96.6 31 .........................C... AACCAAACTATGTCATCGATCGGAGATTTCA 568 29 100.0 31 ............................. TAAAATAAATGCCTGTGGTTTTTTCTTAACT 508 29 96.6 31 ............................A GTTTCCGAAGTTGAATTACACTCGCCAAGTT 448 29 100.0 31 ............................. AACACAGTGATTTGATTACCTTGAGCAACCC 388 29 96.6 31 ............................A TCTTGATGCCGAGGTCTTTAGCTTCTTGAGA 328 29 100.0 31 ............................. CATCCACCTTTGATGAAACGGATCCACGCAA 268 29 100.0 31 ............................. CTTGTGTGACGGCCTCCACTCCAGATCCCGC 208 29 100.0 31 ............................. TAAGCTTCAAAAATAGCCATTGATTATAAAA 148 29 100.0 31 ............................. GACAACTTTCCACGGCAATCAGGGCTTTCCA 88 29 100.0 31 ............................. AAAGATGCACGTGGCCTAATGCAAGTTATTC 28 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= =============================== ================== 13 29 98.7 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : CTATATCGCTGTTTGCGGTCA # Right flank : A # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2-330 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQXO01000025.1 Acinetobacter baumannii strain MCR6739 NODE_32_length_44057_cov_30.227682, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 2 29 100.0 31 ............................. TACTATTATAATGATCTAAACCCATTACAAC 62 29 100.0 31 ............................. TCATCAATAAGTTGGCCTTGATTTAAATAGT 122 29 100.0 31 ............................. GATACAAACGAGTTCGCATCTCGACCAGAAG 182 29 100.0 31 ............................. TTATCCAGATAAAACCATATCTACAAAGTGG 242 29 96.6 31 ............................T CAACCTGAACACAGACATACATGTTCTATTG 302 29 82.8 0 ...GC...................AT..T | ========== ====== ====== ====== ============================= =============================== ================== 6 29 96.6 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : TG # Right flank : TTTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTAC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //