Array 1 165960-167183 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYEW01000002.1 Campylobacter coli strain PSU100 NODE_2_length_212094_cov_338.238, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 165960 36 97.2 30 A................................... TCCATTCTCATGAAATATTTAGCCATTATT 166026 36 97.2 30 A................................... GCACCTGTTTTTGATTGAACGAAGCAACCA 166092 36 100.0 30 .................................... AAACTTTTTACAGCTTTGTAGAATATATAA 166158 36 100.0 30 .................................... TTATTTTCAAGTGAAAAGGAATAAAATGTT 166224 36 100.0 30 .................................... TTATTATAGCTAATACTGCTTTATTTTGAA 166290 36 100.0 30 .................................... GAACCTTTAGAGTATAACGATAATCAAGTA 166356 36 100.0 30 .................................... TTATGAATGTAATTTAAGTACAAGCTTTAG 166422 36 100.0 30 .................................... TAAATTGCTTAATTGTGAAAACCAATTATT 166488 36 100.0 30 .................................... AATCAAGAGCGCATAGGAAAAGATATATAT 166554 36 100.0 30 .................................... AAATAATTTCAGTAAAAACACTTGACAAAT 166620 36 100.0 30 .................................... TCCATTCTCATGAAATATTTAGCCATTATT 166686 36 97.2 30 A................................... GCACCTGTTTTTGATTGAACGAAGCAACCA 166752 36 100.0 30 .................................... GAGAAAATATAAAAAAATAAATAATTTCAA 166818 36 100.0 30 .................................... TTCGAATTCAAATTCCATTAAACATTTTCC 166884 36 100.0 30 .................................... ATGAAGTGTTTTAAAAAGGCTTAAAGGTAT 166950 36 100.0 30 .................................... ACAAAAGATACATATTTTATTGATAAAGAC 167016 36 100.0 30 .................................... AAATTTGCTTTATTTAAATTGGTTTGCCTA 167082 36 100.0 30 .................................... TATATATTAATTTTAAATTATTTGTCAAGT 167148 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.6 30 GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Left flank : ATAAAACCAGGTAGACATATCAAAATAGCTAAGGCTAATGAAAAATTCATCATCGCCTTACCAGGTTTTCCTTACTCGGCTATGGTAATGTTTAATCTTTACGCAAGAGAGATTTTAAACTCTTGGTTACTTCAGCCTAAAGACTATATTTGCAAAGCCTTTTTACAAGGAAGTTACAAGAAAAAAACACCTTATTTGGAATTTGTCGCTTGTAACATAAAGTTTGAAAATGGACGCATTTTAGCCAATCTTGAAGGCAAAAAAGAAGGCTCTAGTGCGATTATAAACAATCTTAACAATAAAGCTGCCCTTATGGTGGCGCCAAAAGAATGTGAAATTTTAGAAAATGAAAGTTTAGTGGATATTATCTTTATGCCTTAAAATTATTTAAATAATTTTATTTCGATTTTAATCAACCCTAAATTTCAATAAGTTTCAAATTCGCAACCTCCTTTTAGTGGAGTAATTAGCCCTAGCGGAGTTTCAATCCACTAGGGTTT # Right flank : TAGATATTTACCAGATAATGAAAATTTCGGGGTTTTTTCATGAAAAATAGCAAAAATTATGCTATAATCTCATAAGAAATTTAAAAAGGGACTAAAATAAAGAGTTTGCGGGACTCTGCGGGGTTACAATCCCCTAAAACCGCTTTTAAAATTCAAATAAATTTTGCTGATGATATTTTTCTTGTTTTTTGTTTAGTTGTATTTCTTCATTATTTGAATTTTTGTATTTAAATTCTCCATGACTATCTATATCAAAAAGTGTTAAATTGGTTTCGTTATTAACTTTTTCATTAAAAACTATGCCACCAAGCAAAAGCTCCATTTTATCAAATTGCTTTTCAGTGATGATTAAAGCCCTTACATTTCCATAAGGTGGCAAAATCTTTTTTACATTTTCAATAGAACTTTTTGCAGAACTTAAACCCTTGCAAATACGCATATAAACGCTAAATTGCAGCATAAAATAACCTAATTTTATAAGATTGTTTCTAAATTTACTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: F [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //