Array 1 503-1990 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQMP01000005.1 Neisseria meningitidis strain M28960 M28960_CHA4011A31_cleaned_ctg_7579, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 503 36 97.2 30 ........G........................... GTTTCTTCCCATATACTGCTGTTCAAACCG 569 36 100.0 30 .................................... CTTCCGTGAGATACATTTCCCAATCTTCTT 635 36 100.0 30 .................................... TGATTTGCTCGACAGGTGAATAGCCATAAA 701 36 100.0 30 .................................... AATTTAATACGGCGACCATCTCGTGCCAAG 767 36 100.0 30 .................................... TCATCAATCGCCCACTCAAACCCAAGCATA 833 36 100.0 30 .................................... ACGGCGGTGGAAACGGTTTTCATAAAATTT 899 36 100.0 30 .................................... ACGGCGGTGGAAACGGTTTTCATAAAATTT 965 36 100.0 30 .................................... GCCTCACAAATATCGTCAATGCTTGCGCGA 1031 36 100.0 30 .................................... TGCCACTTGATGTTTTAGCCATAGTGTTCT 1097 36 100.0 30 .................................... TGCGAAGCGAACACCCTGAACAATGCCGAC 1163 36 100.0 30 .................................... CCGCAAAGCAGCCGAAAAAGCCGACAGGAA 1229 36 100.0 30 .................................... CATGCCGTCGGGCGGTGTTGTAAATTTTAA 1295 36 100.0 30 .................................... TGACAAATAAAGCACGATTGTTGCAAAAGG 1361 36 100.0 30 .................................... CCAACGGATAAAATTACGCCCAAGCACCTG 1427 36 100.0 30 .................................... GTATTGAGCGTCAAGTACTCGCCATTCGAG 1493 36 100.0 30 .................................... TGAAGGTTCGATAATTCGACCTGAAAAACG 1559 36 100.0 30 .................................... TCACTCTAAAAATCCGATTCTACCACCGCT 1625 36 100.0 30 .................................... TTGGCTCGTCTGCTGCCGTCAATCGTGCGC 1691 36 100.0 30 .................................... TAGATTGCCTCATATACGCCGAGCGGGTAG 1757 36 100.0 30 .................................... CAGGTCGTGCTGGAGCAGGCCGACGATTTT 1823 36 100.0 30 .................................... CATACAGTTCATCTTCACCTGCAATCAGGG 1889 36 100.0 30 .................................... TGCTAAGGTTTAATTGGCATTTTCTTTTAA 1955 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 23 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGGAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //