Array 1 316314-317928 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXAU010000001.1 Salmonella enterica strain 160 contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 316314 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 316375 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 316436 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 316497 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 316558 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 316619 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 316680 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 316741 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 316802 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 316863 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 316924 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 316985 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 317046 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 317107 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 317168 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 317229 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 317290 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 317351 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 317413 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 317474 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 317535 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 317596 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 317657 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 317718 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 317779 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 317840 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 317901 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 334061-335537 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXAU010000001.1 Salmonella enterica strain 160 contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 334061 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 334122 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 334184 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 334245 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 334306 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 334367 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 334428 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 334489 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 334550 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 334611 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 334672 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 334733 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 334794 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 334856 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 334959 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 335020 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 335081 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 335142 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 335203 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 335264 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 335325 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 335386 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 335447 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 335508 29 96.6 0 A............................ | A [335534] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //