Array 1 168945-168122 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADTQG010000002.1 Pseudomonas mendocina strain PSB00032 PSB00032_c0002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 168944 29 100.0 32 ............................. CAGCAGCCACCAGGTTGACGGTAATCATTGCG 168883 29 100.0 32 ............................. GTTTCGCCAGTCTCCTTTGCGATCGCCGTACC 168822 29 100.0 32 ............................. GCGCGGTCGGTAGCGCGCTCCAGCACAATCGC 168761 29 100.0 32 ............................. AGTTCGAGCGCCGCATCCGGCGCGAGATCGCT 168700 29 100.0 32 ............................. GAACAGCGCCCCGAGGCAGATGGCCAGGCCGG 168639 29 100.0 32 ............................. TCGCGCAGGCTGGTCACCGCACCGTACTCGGC 168578 29 100.0 33 ............................. TTCTGCCCGGTAACAACGGCCAGGATGCCATTT 168516 29 100.0 32 ............................. TTCATCGAGCGCCCCGCGCGCCTCGTCCGCCG 168455 29 100.0 32 ............................. TGGCATCATCCTGAACCCGCGCGACTGGCACG 168394 29 100.0 32 ............................. ACCGTGCGCATGAAGCTGAAGAAGGTGGCTAT 168333 29 100.0 32 ............................. GCGTACTGGGCTGTAGTGTTTGCGGCCCAAGC 168272 29 100.0 32 ............................. CATCACCATCCGTCTGGGCATCCAGTACGTCC 168211 29 100.0 32 ............................. CACACCGCCACCGTCAGCGAGGTCGCCATGTA 168150 29 86.2 0 .............T...........G.TA | ========== ====== ====== ====== ============================= ================================= ================== 14 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATGAACCG # Left flank : GGCAAGATCATTCCCACCATTGAAGAGGTCTTGTCCGCTGGCGGTATCTCGCCGCCCGAAGCTCCGCCTGAGTCCGTACCGCCCGCCATTCCCAATCCCGAAAGCATCGGCGATGCCGGACACAGGGCGCAGTGATGAGTTTCCTGGTCGTGGTTACGGAAAACGTCCCGCCGCGCGTGCGTGGACGCATGGCCATCTGGCTGCTGGAAGTGCGTGCCGGTGTTTATATCGGTGATGTGTCCAAGCGCACCCGAGAAATGATCTGGGAACAATTGAGCCAAGGTCATGAGGATGGCAACGTGGTTATGGCTTGGGCCAGTAATCATGAGTCCGGCTACGAGTTCCAGACACTGGGTTCCAATCGCCGCCTCCCGGTAGAGTTCGACGGTCTGCATCTGGTCGCTTTCCACCCCCTGGAAATACCCGATCTTTAACAAGGAAAAGTTGGTAGATCTTTAGCGACTGAATTTTCCCTTCGGGAACAATTGGTTACGCTAAGT # Right flank : GCGCAGTGGCCGCATATCGCTGATTGACCGTGGTGTTTTCTGCGTGCGCGAAGAGGGCTGAGCGATCAGTCTGGCCGCTGTTTTTTAGCCAGACGGGCGAGTAATCTGGCGGCCGATGGTTCTGCGTTCACAGTCGTGACGCGGATGAAAAGGGAACAGGGTGCGGCGAATTTCGCCAATGCCCTGGCTGCCCCCGCAACTGTAAGCGGCGAACGATGCCCGGATGCCACTGACTTCGGTCGGGAAGGCGGGCGAAGTGCCAAGCCGTGAGCCAGGAGACCTGCCATCGGCAACGGGCGTTTCGCCCATCCTTCATCCGAATCGTCGCGCGGTGGGCGCGGCAAAGGAACTCGCATGCATATCGAACCGGGCGTCGTCGAAGGCGCCAAGATTTTCCTCAGTTACGCAACGGCAGTCGCTGCCTTCGGCCTGACCGCCAAACTCGCTCTGGACAGTGTCCGCAACAACGGTGGTGCTGCCGCCCTGGCGTTGCGCAGCCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 180494-179673 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADTQG010000002.1 Pseudomonas mendocina strain PSB00032 PSB00032_c0002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 180493 29 100.0 32 ............................. ACCCTCCCACTCTCGCGAGAGCGGGCGGAAGC 180432 29 100.0 32 ............................. GCGTTCATGTTGCCGCCACCGGCCTGTTGCAA 180371 29 100.0 32 ............................. GCAGGATGGCGGCCACGGTGGTGTTCCCCAAC 180310 29 100.0 32 ............................. GGGGCGGTACCGAAAACCGAGATCCTGGACGA 180249 29 100.0 32 ............................. ACCAGCAGTAGAAACGACGCGCATTGATGGCC 180188 29 100.0 32 ............................. GCGTTGGTCGATCAGTTGCGCCAGCCGCTGGG 180127 29 96.6 32 ............T................ TACTTGCTGTGCTTGACCCACACGGAACATGC 180066 29 100.0 32 ............................. GCCCGTGCGCGAGCGGGCGATAGTAGCGACGG 180005 29 100.0 32 ............................. CTGTCCCCCAGGGCCTCGGTGAGGCGCGCCAC 179944 29 96.6 32 ..T.......................... CCGCCCAGGGCGCCGGCAAACAGGGCAACGCG 179883 29 100.0 32 ............................. CGCGTATTCCGCTGCCAGTCTTGCCTGGTGAG 179822 29 96.6 32 ....................A........ GCCCTGGCGCAGGGCAAATGCCGGCGCATCCA 179761 29 89.7 32 ...........A.T..........T.... AACTGCGTGGCTGATGACCCGGTGTTCCGTGC 179700 28 93.1 0 .......................-..G.. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATGAACCG # Left flank : AGGAAACCATCATGCCGCGTCTGTACCGCGAAGCGCCGGTCAACTCGATCTGGGAAGGCTCCGGCAACGTGCAATGCCTGGACGTGCTGCGCGCGTTGTCCAAGGAGCCGGGCGTGCTCGACGCACTGTTCACTGAATTGGGCGACGGCCATGGTGATGCCCGTCTCAAGGCGCATATCCAACGGTTGAAAGCCGATTTTGCCGATACCGCCGACATCCAATACCGCGCCCGCCAGCTCACCGAAGACGTGGCCGTGGCACTGCAGGCCAAGCTGCTGCTGGAGGCTGGCAACGCCACCGTCTCCGATGCCTTTATCGCCAGCCGCCTAGAAGGTCGCGGCCGGGTCTACGGCACCCTGCCGCGCGGCGTCGACGTCGACGCGCTGCTGGCGCGCAGCACGCCACATCTGCTTTGATGTGGCTGCGATCTTTAACAAGAAAAAGTTGGTGGGTTTTTAGCGGCTGATTTTTCCCTTTTGGAACAATTGGATACGCTAAGA # Right flank : GTAACGGCGAAAGCGAACTGTCGTTCGAGCTTGGGTCTGGCAAAACCGTTCTGGTTGTCGCCTAACCCGTCTGCAGTGCTAGCGGCGCTTTGGCGCTGGCGTCAGGCATGTGCCTCGCGATCGAGCACATCCGCCACCCATTGATTGATACTTTTTTGCGCCAGCTCTGCTTTCATCGCGACTGATGCGTGAAGAGCTGGCTCCAGACGCAGACTGAGTTTTCCTGAGTAGGGCTTTTGTGGGGCGCGCCCCAGTTTGGCGCAGGTTTCGAGGTAGTCGTCGACAGCTTCTTCAAAGGCCGTACGAAGCTCTTTCACCGACTCACCGTGGAAACCCACTACGTCGCGAATGCCGGCGATATGGCCAATCAACAGGCCGTCTTCATCGCTGTATTCGATGCGGGCCGCATAACCTTTGTAATTCATTGCGTTCATGGAGTGACTCCTGCTTGCTCAAGAAAGACTCGGGCATCACGAACCTGATAGGGCTTGGCTTCCTTG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //