Array 1 1062730-1066682 **** Predicted by CRISPRDetect 2.4 *** >NC_014935.1 Nitratifractor salsuginis DSM 16511, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 1062730 31 100.0 35 ............................... TGTCGCCCCGCTTGAGATTGACAAAAGTCTCTGGA 1062796 31 100.0 35 ............................... CGCCGCCCCACGTCGCTAGGGCGATAACCCAGGCA 1062862 31 100.0 34 ............................... CAGTCTTGGGGTGGTAGAGGTCGCAACTATCCCA 1062927 31 100.0 36 ............................... CTTCGTGAGGGAATCCGCTCTGCTCGTGTGCTATGA 1062994 31 100.0 34 ............................... GCTCTCTTTGAAACGGTCTCCACAAATTCCTTCG 1063059 31 100.0 37 ............................... GTCTCATGCTGCCACCTTTTTCTTTTTCTGGATCATC 1063127 31 100.0 34 ............................... CACAGAAGAGAAGCTGAAGAGGATCAACCCGCTC 1063192 31 100.0 36 ............................... TTGAAGCGGTCCGCCTCGATGAGTTGGAGAGTAAAC 1063259 31 100.0 37 ............................... CCGTCAGCGGTTTTGGAGATCTTCCCGTCAGATGTCA 1063327 31 100.0 34 ............................... ACGTCGGCCATTGCGCTCTCGAAATCCATCGCTG 1063392 31 100.0 37 ............................... TCAAGATATGTGGTTTTCAAAACGAAAGCATCCGGAT 1063460 31 100.0 36 ............................... GGTTTTTTCAAATGCTCATGTCCGATAGCTCCAGCC 1063527 31 100.0 35 ............................... CAGTCTTTTTTGATAGCTCAGAATCTTCTGCTATT 1063593 31 100.0 33 ............................... TCGGGTACCCACAGATCAAGCACGCCCTGGTCA 1063657 31 100.0 35 ............................... CCTGATGGAAAAGGAGGCGATCGCTTCCAGCCGGG 1063723 31 100.0 36 ............................... CGGACCCACGAGCAGGAGATCGCGACGATGGGCGCG 1063790 31 100.0 35 ............................... ATTTGGGCCTTCTTCCCCTCGTCGATACCCCCAAT 1063856 31 100.0 35 ............................... TCCGTCACCCTTGGCGACGTTCCCGGCACACTTTG 1063922 31 100.0 35 ............................... GATGATGCAGCGCAGGACTTTGCCCACGATCTGAA 1063988 31 100.0 36 ............................... GCCTCGCCAATGTCGCTGGACTCGATATCAACAATG 1064055 31 100.0 35 ............................... TTTTGAAGAGCCAAAAGAAGGGGAATATATCGTGA 1064121 31 100.0 34 ............................... CCCAGATCGAGCTTGCAAAAAAGATGGGTGTCAG 1064186 31 100.0 34 ............................... TCAAAGTGAAGGTGTGCCTGTGAGCTTGATCGAA 1064251 31 100.0 36 ............................... CGCTAAAAGCTTTTCGATGAGCTCCTCATGCTGCTT 1064318 31 100.0 35 ............................... CAAAAGAGGCCAGCTCTCCCAGACGTTTGCCCACG 1064384 31 100.0 36 ............................... GGTTGATAGTACGCCCATGCACGGCAAATTCATACC 1064451 31 100.0 36 ............................... CCGGTCATTTTCCAGAATATTCAAAATCCCAATGAA 1064518 31 96.8 36 ...T........................... TGTGCTGCGTGCACTGTTTGAGGGGAATGCGGTGGA 1064585 31 100.0 36 ............................... GCCCACACTCTGATCTCTCTGCCATCCTCCTGCCTG 1064652 31 96.8 34 ....................A.......... ATCCAGATGAAAGGGGCGTTGTATAGCTCCAGGC 1064717 31 96.8 36 ....C.......................... ATGACAAACAGATAGATCCCATACCTGCGGGCCAGC 1064784 31 100.0 35 ............................... CCACTCCCTGGTAAAGCTCCTTTACCACCCTGGTT 1064850 31 100.0 35 ............................... GCATTACTTACGTCACTATTCAAGGAAGCAGTATG 1064916 31 100.0 37 ............................... CCGAAGCGATGGCAGAAGCGCGCCTTCTACGAAGGGG 1064984 31 100.0 35 ............................... CTCAAAGGATGAGTCAAAGGTATACGATGAACAGC 1065050 31 100.0 35 ............................... CCTCAATTTCTCTTACAATTTCATCGTAAGGGCGA 1065116 31 100.0 36 ............................... ACGCCGCTTGCCGTTCTTTTTCGATCTGCTCCGGAA 1065183 31 100.0 35 ............................... TTTTATTGTGCCAAAAGAAAGGCTCTACTGCTGAA 1065249 31 100.0 36 ............................... TGGGAATGTTTTCGTGGACGTCTCCTCCTCGCGGGT 1065316 31 100.0 34 ............................... TAGCGCATTTCGGCACTACGCGAGTCGATGAGAT 1065381 31 100.0 35 ............................... TCAATTATTTTGTTGACAAGTCCTATTGTAATTTC 1065447 31 100.0 36 ............................... CCGTGTCTATGCCCTTGGGGAGTGGGGCACACTCAA 1065514 31 96.8 35 .....A......................... TCTTGACATTCTACAAAAGTAGACGAAGATGTTGT 1065580 31 100.0 36 ............................... TCCGTTGATAGCTTCATCTCACCTTTGGCCGGTGGC 1065647 31 100.0 36 ............................... TATCGTTGTCGTCTTCATCATATACAGCATATGAGA 1065714 31 100.0 36 ............................... ACACTCCTTTTCTCCCAGGTTGACCTACTAGCCAAG 1065781 31 100.0 37 ............................... AAGTCGTAGGTATGCCACACCGTATCCCCGACTTTGG 1065849 31 100.0 35 ............................... AATTCCCCTACGGCATCTTCTGAATACCAAGATAT 1065915 31 100.0 38 ............................... GCTTTCCAAACTCTTGGAAGTTTCGCATTTCCAAAGCC 1065984 31 100.0 37 ............................... ATGGTTCCTGCCGCTGGAACATTATTGGACGCTGCAA 1066052 31 100.0 37 ............................... ATTGCATCGAGTGTCTCGATCTCCTTTGGAACATCGA 1066120 31 100.0 35 ............................... TTTGGTGCTCTATGGCGGGGCAGGTTCCGGCAAGA 1066186 31 100.0 37 ............................... ATGTCTATAATAGCCTGGGCGTATTCGCTGATCCCCC 1066254 31 100.0 35 ............................... TTGACGGTGCTTTCATTGTATTATGAAAAAGTCGA 1066320 31 96.8 33 .....................A......... TATCCAAATCCGAGAGGCGATATCAAGCCTGAT 1066384 31 100.0 37 ............................... ATTTCTACCTGTTCTATCTGTTTGCATGTGAACAAAT 1066452 31 100.0 35 ............................... GAATAGGCGCGGACCTTGCATTTGCAGTTGTAGCC 1066518 31 100.0 36 ............................... CTTGCCCCCACACAATCAGGGCAGAGGACAAGACTG 1066585 31 96.8 36 ..T............................ ATATCGAGCCAGTAATTTTCAGGTTCGATAATGGGG 1066652 31 93.5 0 ..T...........................C | ========== ====== ====== ====== =============================== ====================================== ================== 60 31 99.6 35 ATCATGAAGCAGTCCCTATGGGATTTGAAAT # Left flank : AATCTACAAAACCGAACTCGATCCGCGCATCGGCTTTCTGCACGAACCCAACTATCGCAGCCTCAGCCTGCATCTGGACATCGCCGAGATCTTCAAACCCGTCATAGGAGACAACCTGATCTTTACGATGCTCAACAAAAACGAGATCACCGCCAAAGACTTCAAAACAGACAGCGGACGCATCCGATTCACTAACGACGCGATCAAAAAGATCGAGATGAAGATGATCAGTAAACTCACAGAGCAAATCACCATCGGCAAACAGCAACTCACCTGGCGCCAGATGATCCGCCGCGAAGTTAACCAACTCAAGAAAACTATCTGCGAATACAGTGACTACGAACCGTTTGTACTATCGTGATAAAGCATTTTCTAAGTTTTACAAAAAGCCGAAATATCGGCGTTTGTGCAAGTGAAAGAGAGGGTGTTAAGCTGTTTGAGAGGCGTAAAAAAAAGAGCATATTTTGCTAAAAACACCTAAAATTGGGGATTTTTTTGCT # Right flank : CGCCCGTGGCCTGCCCCAAGACGAGTGAGGATTGAAACATATGTGCGATGGCAAAGTGTCTGGCGGGGCTGAGTCACACCCGTTCCGGATTGAGGCACAACACCTTTATTTTGATAAGAGCTCTATTTATCTACTCCCCCGTTTGCGTTACAATAACTCAAAGTAGCAAAGAAAAAGGAGAGGACAATGAAACTACGCTGGAAAGCGACACTGGGATTTGGAGGGGGAATGGCGGTCGGGATCCTTCTCGGCGTGCTTCTGACGATGGGGATGACTTCCCTCTCTGGGGTCCAGGGCTCCAATCCGCGGATCGGGGTGATGAATCTGCTGGGGATGGGCGTGGGGGCCTTTGTCGGTGGGGCGATTGGCGGGGCTTCGCTGGGACGGGGGCTCCGGCCGATGATCGGCTATGGGATCGCCTTTGTGCCGATGGCGGCGCTTTCGGCGTTCTCTTTGCTGATGTTTCTGTAGGGGGTGCGGGATGCCGATGATGCTGGAGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCATGAAGCAGTCCCTATGGGATTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 2 1482851-1482028 **** Predicted by CRISPRDetect 2.4 *** >NC_014935.1 Nitratifractor salsuginis DSM 16511, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================================================================== ================== 1482850 36 100.0 30 .................................... AAAACTTCAAGCGAAAAGCCGCACCGGGTC 1482784 36 100.0 30 .................................... AAGTATTTACAGGCAATGTCGAAAGCCCTG 1482718 36 100.0 30 .................................... ACGACACCGACCGCAAGATCCAGGAGATCA 1482652 36 100.0 30 .................................... AGGATGTCTTTTTTAAGTCGTTTAATCTTG 1482586 36 100.0 30 .................................... AGTTCAGGAGTGTCAATCTTTAACAATACA 1482520 36 100.0 30 .................................... AGGGAGAGGGAGGCAAAAAGAGAGAAAAAT 1482454 36 100.0 31 .................................... CAGGTCTTTCGGGATATTCCACTGTCCATTT 1482387 36 100.0 30 .................................... ACATCGTCCCAAACGTGCTTTCTGAATTGG 1482321 36 100.0 30 .................................... CGGTTGATGTCGATCTGTCCGACGCTACCA 1482255 36 100.0 30 .................................... TTAGTGGTGAAGGCTATATTCATATAGATA 1482189 36 100.0 88 .................................... CATTAAAAAATCTCAAAGTTTTTGAAAATTTTGGTGATTTTCATCGAAATTTGCATCTACAGTAAGGTTTTTGCTATAATTTCTAACC 1482065 36 91.7 0 G............A.....................T | TT [1482042] ========== ====== ====== ====== ==================================== ======================================================================================== ================== 12 36 99.3 35 ATTGTAACAGGGTGGGGTTTTGAGGGGTCTTAAAAC # Left flank : CTGGTCTCACTGCCGGGGATGATGACGGGGCAGATCCTCTCGGGCGTCTCCCCGCTAATAGCAGCCCGCTATCAGATTATGGTGATGCTGATGATCTTCAGCGCTTCGGGACTTTCGACGGCGCTTTTCCTGCGTTGGGTCTCCGCCAAAAGCTAGTCGAGCTTATTTTTTCTTTTTCACCACAAAGGAGATTTTGGCGACGACACGATAGACGGTGATCTTGTCACCATTGACCTTGGCACTCATATCCTTGATATAGACGGATTTGATGTTGTCGACGCTCTTGGCAACCTCTTTGACGGCATTGGCCGCGGCATCTTCCCAGCTTTTCTTGGATTGGGCGATCACTTCGATCACTTTGACGACACTAGACATTTTTGACTCCTTCTGTGGGAATATTTCATTATAGCGCAATGCCGGAGAGGGATTTATGCTGTTTTTGGGTGGTTTTTGATGGATGATAGGAATATTGAGAAGATTCTTTGAAAGAACTTTTGAGG # Right flank : CAAGAACTGTTACAACAGTTCCATTCTAGGGCCCATCTTCGGACGGGCCTCAGCCTCTATTTACTACTTCTATTTACAGATCAGAATTTTTCTTCATCAGAAATCGAAAAGTGTCGGTTGTGTGATCTCTTCCTGTGAACTTTGTTCCCCTACGACGATCTCCATCTTCCCAAATTGTGCGTCGGTAAAGAGCAGCATTCTGACATTTCCCTTTTTGACATTGATATGGAGGAATTCTTTCATCCTTTTTTTGCCGTGGTTGGCGGATTGTAGAGAGTTGAAGACTTTGGCATAGACGGAGTATTGCAAACGGATGAAGCCCTGCTTGTCAAGATAGCGGGAGAGCCATCGGTAGCGTTTGCGGTCCTTCTTTGATTGGGTGGGGAGGTCGAACATCACTACCAGCCACATGATCCTAAAAGCACTCACGAAGCGCCCCGAAATCGATGGTGGGGAAATGGAGATTCTCTATTTTTCTGCTACGGACCACCGCTTTGAAT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.39, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTAACAGGGTGGGGTTTTGAGGGGTCTTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA //