Array 1 262689-264026 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVWH010000002.1 Clostridioides sp. ES-S-0048-02 CD-ESS004802-ESS004802-EN-USA-2017-093-JS_112, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 262689 29 100.0 37 ............................. TTCAAATTCTCACTTATATATTTATCTACATCAATTA 262755 29 100.0 37 ............................. AGTCCTGTCCCACCTAATGAAAGAATAAGAATTTATA 262821 29 100.0 37 ............................. CAACTACTTTTGAACTACTTTGTGATTTGTACCAACG 262887 29 100.0 36 ............................. GTAGAAAGAAATAACATGTATTCTTATAGGACTAGA 262952 29 100.0 35 ............................. TCAGAAATAGCAAATATGATGTTTAATAACGGAAG 263016 29 100.0 36 ............................. AAGAAAATAGAGGATTTAATAGTGTTAAAATTGTGA 263081 29 100.0 36 ............................. AAACGTAAATTTTAAGGATAGTTACTTTATCACTTA 263146 29 100.0 36 ............................. AGATTATAAGGGGATGATATATGTGGAAGAATTGGA 263211 29 100.0 39 ............................. ATATAGATGTAGAAGAGGCATTAGAACATATTCAAGAAA 263279 29 100.0 37 ............................. TGATTTTTTTCTCTTCATCTTTTATAATTTATGTATA 263345 29 100.0 36 ............................. TGATTTTTTTCTCTTCATCTTTTATAATTTATGTAT 263410 29 100.0 36 ............................. TTAATATCACTCAACGCACGTGTACTTTCTTCTTGT 263475 29 100.0 37 ............................. TGTATAGAGTGTAGATATTCAAGCAAATGTTTTGGAG 263541 29 100.0 36 ............................. AATTACTTGTTTTTCATAAAAGTTTAAATCCTCTAA 263606 29 100.0 35 ............................. AAGGATTATTTTAATTATATAGTTTTTTTAGATGA 263670 29 100.0 36 ............................. GTGAAATTATCTTATAATTTGTTCCTGTGTTATTAA 263735 29 96.6 37 .......................A..... TTAAGTCCCCCGAGACCTTTTTCCACACCTGCGGTAT 263801 29 100.0 36 ............................. ATTTTTGAAGTTAAACTTTCTGAATCTTATTCTAAA 263866 29 100.0 38 ............................. AGGTTCTCCAGGGTCGCCTTTATCTCCTTTAGTTCCAG 263933 29 100.0 36 ............................. TGGATTGGAAAGTAGAAGAAGTTTCAAAGCTATTAG 263998 29 82.8 0 ................A.AA...C....T | ========== ====== ====== ====== ============================= ======================================= ================== 21 29 99.0 36 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : ATTTTATCAATGATGAAAAGTATAAAGTTTTAAAGGCATGGTGGTAGAGAATGTTTGTTATTGTTACTTATGATGTTGTTGAACCTAAATCACTAAACAGGATTAGAAAAATACTCAGAAAATATTTGACTTGGACACAGAATTCTGTTTTTGAAGGAGATATTACTGATGGAAAGTTACATAAATGTATTTCTGAAATAGAAAAGGTTATTGATAATAGTGAAGATTCTATTTATGTTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGTATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGAAATTTATGCTAAAATAGGGTTTAACAGTTGGAATATAAGGCATTGAGAGTGTGTGATAATTATTCTCAATTGCACTACTGTTCGCTCACTGCAAAATTTGATATTTTTATTTAATTGTAATTGCTTGAGTATAGTATTTTCAATGTACTCAATTAGACCTATTTTGGG # Right flank : TAAAACATACATATTCTATAAATAATAATAAGAAAGCAATAAAAAAATGAGGTGAAATAAAATTTATGATAAGAAAATCAAATAACAAAGATATAGAAAAAATAATGGAAATATGGGAAGAAAGTACAATCAAAGCACATGATTTTATAAATAAAGATTATTGGAAAAATAACTACAATACTGTCAAAAACGAATATATGCCTATATCTGAAACTTTTGTATATGATGACGAAGAAGAAATAAAAGGATTTATAAGTATTATAGACAATGAATTTATAGGAGCATTGTTTATAAGTACAAATTATCAAAACTTAGGAATAGGAAGTAAACTTTTAGACTATGCACTTAAAGAATATAAAAATCTAAGTTTAGCAGTATATAAAGATAATAAAAAGGCAGTTGTATTTTATAGCAAAAAAGGTTTTAATATAGTAAAAGAACAAATAAATGAAGATTCAGGATTTAAAGAATATATAATGGAATATAGTAAACAACTTTAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 14259-13969 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVWH010000029.1 Clostridioides sp. ES-S-0048-02 CD-ESS004802-ESS004802-EN-USA-2017-093-JS_139, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 14258 29 100.0 36 ............................. TTTACAAAGCCTTTAGGTTTGCATTAAAAGAACACA 14193 29 100.0 37 ............................. ATATATTAGTAGAATAATACATTCTTAAATTGTAAAA 14127 29 100.0 36 ............................. CCGCTTCTCTAGCTGATAAATCAACATGATTTGCTT 14062 29 100.0 38 ............................. GATTCAGGAGCAATTAATAAAGACTATGTAAATAGAGT 13995 27 86.2 0 ....................-.-.A...A | ========== ====== ====== ====== ============================= ====================================== ================== 5 29 97.2 37 GTTTTATATTAACTATGTGGTATGTAAAG # Left flank : CATACGAGGATAAAACCTACTTCCTGATGAAAGGAGGTGGGAAGTATGGACAACTTTTTACTTAGTGTATTAGCTAGTTTAACAGCTAGTTTGATTGGATATACAGTTTGTATATGTATCAAAAACGTAAAAAGCCACTCTACTCGTGGCAAGAGTAAAAGTGGCTGGGAATTTGATTTTAAAATCAAATTCCACAAATTTAAATAATTTCTAATTTTTTAAATTATGAACTTCACTCTACGTCTAAATAGATTGTAGTTCTTCTTGCTTTTATTATATCACAAATTGGAGTAGATATTCAAAAATAATATTTTTATATGCTAGTAAAAATGTAGATAGTTTTGCAGTGTGCGAATTTTTAAATATAATGCTTGTAATTATTGAAATTACTGCATCAGAGACTAATTTTTCAAAATGTCAAAAAACACTACTGGTGCTTCACTGCAAATTTAAGAGAGTTTTATATGTGTAAGTATTGGAAATACTCAATTCATTTTGGG # Right flank : TAGAGTAGTTCAAACTACTCTATTTTTTTATTCATAAGTATATTTTATATTAATTTCCTTTTTATTAATTCTTCTTCGCAATAATATCTACACAATTCTAAAAAATCTATTTCTAAAGCAAGTGATAAATCTATAATTGTAGAAATATTAATATTTTTATATCTTTTATTTTCTAAATCAGAAATATATGCTCTACTATAATTTGCTTTTTTAGCTAATTCTATTTGAGTCAGACCTCTTTCTTTTCTTAGTTTTTTTAGCATGTATAAAATCTCCTTTTATTAAATTTTATATATGATATTATTTGTAGAATTATAAAATAAATGCGGGTATTAGCATCGTTTTTTAATGGTATAATATGGTAATATGTACTTAAGATAAAATTTTATCGTAGTAGAATAAAAAAATAGACATAAAAAGAATGTAAAAAATTGTAATAAAAAAAATTGAAATTAAAATTATGAATTTTGATATAGTAAGAAAAATACTCAAAAATACGG # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //