Array 1 239591-238385 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARPA010000004.1 Listeria booriae strain FSL L7-1769 NODE_4_length_289007_cov_26.461067, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 239590 30 100.0 34 .............................. TTTCCATTCGCATCTTTAAATTCGATTTCCATAT 239526 30 100.0 36 .............................. ATGTACATTCTCACGACTGTCCCAGCTGCCTGTGCA 239460 30 100.0 37 .............................. ATATCCGCCTGGCAGAAGTCAATATACATTAGCTCCG 239393 30 100.0 37 .............................. TCGGATATAGCCATTTTGGAAGTGCGTCAAGGCTATC 239326 30 100.0 36 .............................. ACAATACGAAATCTGCCAGTTTGTCCATGAGCGGGT 239260 30 100.0 37 .............................. TTCGTATATCCAATCATCTAACAGGTCAAAATCTATC 239193 30 100.0 36 .............................. ATGAGTTTAGCTTCTCGATTAATTTCGTCCCTTATA 239127 30 100.0 36 .............................. TATCATCGCAAAGGGCGGACGTTCTTCCATGAAGTC 239061 30 100.0 36 .............................. TCAATCTTGCCAGTCACATCATTACAATAACTTTTC 238995 30 100.0 36 .............................. ACGACTTAGGCGATGTCGGGAAGAAAGATGTTGATA 238929 30 100.0 35 .............................. AGTCGACTTTTGTCACTTCTGCTATCCAGGTATCG 238864 30 100.0 35 .............................. CTGCTCGCTTAAATTAATCCAGTCGCGGATAATTT 238799 30 100.0 36 .............................. TAGATATTCTCCTTTACAATTAGATAAAACGCTCCA 238733 30 100.0 36 .............................. AGTTTTAACAAAAATAGGAATTAATAATAATGCAGT 238667 30 100.0 36 .............................. GAAGCGAACTACCAGGATAAAGTGGCGGGTGTCATC 238601 30 100.0 35 .............................. TATTTCTGTAATGACAGACATTGGCGGACTGTTCG 238536 30 100.0 35 .............................. TCGCGATTGCAAAAGACTATCTACCGCTCATAGGA 238471 30 96.7 27 ........................A..... TAGGAGAAGGGCGCACTTATACACCCT Deletion [238415] 238414 30 70.0 0 ......CC.G.....C.A.....CA...CA | ========== ====== ====== ====== ============================== ===================================== ================== 19 30 98.2 35 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGGTATGTATATTATCTTGATTTACGACATAGCAATGGATAACGGCGGTCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACACACGTGCAAAAATCGGTATTCGAAGGCGAAATAACCCCAGCACTACTTGCCAAATTGCGAATGGAGTTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAGGAGTTTTGGGGCGTTGCAGATGAGAAAACATCGAATTTCTTTTAGTAGGTAGAAAAATCTGTCGACCCCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTAAGCATTGGTGTGATTGGGTTTAAGGCTGTTTTTGATGTTCGGCTTGTAAGGTTTGAGAGCGGGAATTTGGGATTTGGTTGTGGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : CGGTCTGTTTAGCTACGATTGCTTTGGCAGACAATCTCAGTCTACCAAAGCAATGTTCGTAGCCAGTATACGCTACTTTCCAGTCCTCACAAAAAATCCTCACGATAATCTTTAACATACTGATCAAACGAAGTAGCCTCACGGTGCAGCAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTAATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCTCGTTTTATTATGGTTGCGCGAAATCGTAATAGGGACGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGTTGTCATCTTCTCTGCCACCTCATAATACGTCAATGCTTCTTTTCCGGTAATACTATACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCGATCTCCCCAATATCACGCGTATCAATAAAGCTCGTCCGCGCATTGCCCGCAGGAATGAATAAATCGTCATGTTTCTGAAT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 70202-71152 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARPA010000010.1 Listeria booriae strain FSL L7-1769 NODE_10_length_79930_cov_25.038521, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 70202 30 100.0 35 .............................. CAACACTACTTAATGCAGTTAAGCGAGACACAAGC 70267 30 100.0 36 .............................. CACGAAGATTTGAAGTACACATTCAAAGAAAATATT 70333 30 100.0 36 .............................. ACGCATAGCTCGTATAATCTGGAACTTTCGCTTTAA 70399 30 100.0 36 .............................. TTGTTCTTTCTTGGACTTCGTAGCCCAATTACTAAA 70465 30 100.0 35 .............................. GCCGTTAGCGTTACCTGTCGACTTTTCACAAGAAA 70530 30 100.0 36 .............................. CAGTTTGACAGACGGCATCGCGCTTATGGAAACAGG 70596 30 100.0 35 .............................. ACAACCATGTAGGTTCAAAATTGCAGGTAATAAGC 70661 30 100.0 37 .............................. CCTGTTCAGCGTCTAATCCATCAAGGACTTTAGCCGC 70728 30 100.0 36 .............................. ACGATTGAACTGCCAGTTTTACCGCTGGTAACAGTT 70794 30 100.0 36 .............................. GAAATACTTCCGTTGATGTCTTTTGATACCATTTCT 70860 30 100.0 36 .............................. TTCCATGATGTCAGGGCGCCTGTATCTGGGTGACAG 70926 30 100.0 36 .............................. AAGAATATTGCAGATGGCATTTTTAATTCGCTTACC 70992 30 96.7 37 ..........................G... ATATTGGAAGATTTGGCTAGACAGTGTGATACAAGTG 71059 30 100.0 34 .............................. TTCTCTTTTTATAGCTGCCCTAATTGTCATCAAA 71123 30 83.3 0 ....................C..CA...TC | ========== ====== ====== ====== ============================== ===================================== ================== 15 30 98.7 36 GTTTTTATCTAAGTAATGTGTAATGTAAAT # Left flank : GATGCTGAGCGCAATATCAAACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTTCTAATTGCCGTCGGATTCGCCGGCACAACCAAGTCAGTATTCGAAGACTTCCAAGTAGCAAAAACAAACCGCCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGACTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTAGGGGACATCGACAGATTTTGTTTTTGCTTAGGGGGAGAAGGGGTTAGGATGGTTTTCGAAAAGTAGAAAAAAATAAACAGGTGCAAAAAAGATAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAGGAGTTAAGAGGGTACCT # Right flank : CCCCAAAGAAGGAGAGACACCAAATGACTATGGAAAAATTAATACTACGAGTTACCATAGACAGACCTATCGGATTTAAGGACGACTACGGAAATACATACCCAATAAACTACGGATTCGTTCCCAGTGTCATAGCCGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAACTCCACTTGACGTATTTGAGGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACCGAAGACAAGTGGGTGGTTACTTCAAAAAATGAATTACTATCCAAACAAGAGATATCCGAAAAAACGCATTTTCTAGAGCAATACTTTGATTCCGTTATCGAACTCCTTTAACAAATACAACGGTATAAACGCTCACCTTCTCGTAAAATACCTAAATAAAAGATGAATCACTATTAAAAACAGCACACTAACCATGAAAAGACCACTCGATACCCAGTCCATAAAAAGGCATACAAATACTAAAATTACGAGAAC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 74401-75483 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARPA010000010.1 Listeria booriae strain FSL L7-1769 NODE_10_length_79930_cov_25.038521, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 74401 30 100.0 34 .............................. TTTTTTAATGCTCTTTGAGTCTGTAAGCTCCTCT 74465 30 100.0 35 .............................. AAAGAAAAGAAAATAAAAAATATTGTTCAAACAAT 74530 30 100.0 36 .............................. AAAGCAATTATAAGAAAGGATCAGGCCGTCAGGAAG 74596 30 100.0 36 .............................. TTTAATCCCGCCTGTTACCGACATGTTAGGGTAGCC 74662 30 96.7 37 ........................A..... CTTGTTGTATTCCTCAGCTGCTGTCTTGGTTGCCGTT 74729 30 100.0 36 .............................. CGACAATATCTCCTTCTACTATTGGAATGGCGAGAA 74795 30 100.0 37 .............................. TTTTTCTATGCCTTCCATCACGATTGGATTTTCTTGG 74862 30 100.0 34 .............................. CTGCGGAACTCATTAAAACGACGACCTTGTTTAC 74926 30 100.0 36 .............................. TTACCACTTTTACAAGCAGTGTATGCGGCTTACATT 74992 30 100.0 36 .............................. GAATTAAGGTATACGCAAAACGGTTTAGCTGTAGCT 75058 30 100.0 34 .............................. TCATTAGATTTCCGCTCCTCTCTTATCGCTTTGA 75122 30 100.0 36 .............................. ACCATCTTTAAATGTTTCAATAAATTCTTCCCATGT 75188 30 100.0 36 .............................. CAGCCACATACACGTTTTATATAAATCAACGGCTTG 75254 30 100.0 38 .............................. TGCAAACTTGCGTTTTGTTTGTCGTCCTTCTTTCCAGA 75322 30 100.0 36 .............................. ATAAACGGGCTGACATTTTTAGCAGTGTTAAATTCA 75388 30 96.7 36 .............C................ GATTACGATGCATCAAATCATGTTATTGCCAGTATT 75454 30 93.3 0 A....................G........ | ========== ====== ====== ====== ============================== ====================================== ================== 17 30 99.2 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AATGTTCCACCTCGACGAAGCCAACTGGAAACTGCATAAAAAAGACATCATCAGCAATTCGAAAAGCTGGGAACCATTCCAAAAAGAAGCGTTACAACATGAAATGAGCAATTTTGAAGTGCTAGATAAAGAACGCCTTGTTCAGAAAACAACATTCGGCGCGAATCTACAAGTCATAGCGAATTTCTCGAACAAGAATTTTGAGTACGAAAAGAAAACCATTCCTGCGAATAGCGCGATGATTGTGCAAAACGGGAAGAAAAAGATAATTTCTACAGATAATCTTGATTCGTAATAACAGGAAGAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTATGTATTGATACTAAAGAGGTTAAGCCTGTTTTCGAAGTTTGGGCTGTAAGGTTTGAGGGCAATAATTTAGCATTTTGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAAGTGTTGATGGGGTACCT # Right flank : TGTCAGCGAGGCATATTTTTCAGAGTTGCAAAACAGGTTTTATCTAAAGTAGGAGTTAAAACATAATAAAACGAATTGAATAACAAGAGGGTTAGTATCCATTAATACTAAACAATGGATACTAACCCTCTTAATCTATTGGCCTCTTTGATGAAAATTTTTAGTATGCAATTATCTACTCAAACTAACTACTTTGGTATCAAGCACGTTACCATTGATATCGTAAGCAGTGATGTGCGCGCTATCTGTCGTGTTAAGGATGACCGTTTTTGCATAATATTTAATAGCTGGTGCAGTAACGGGGATTTTAACGCCCTCTACACCATTCACAGTAAGGCTAATTTTCGCTACGTCTCCAGAGAATTGACCAGTAACATAGCCTTCTTTACCAATTACAAATGGAGCAAGTGTGGTGATAGAACCGGTTGCTACTATTTGACTTGCAAGGGTAACAGTTTTTGTGTCTAGTATTCTACCATTGGCATCATATGCAGTTAGTG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 296986-297611 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARPA010000001.1 Listeria booriae strain FSL L7-1769 NODE_1_length_826025_cov_25.868901, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 296986 30 100.0 36 .............................. AACTGACGGTAACACGTCTATTGAAGCGGATGACGT 297052 30 100.0 36 .............................. AGAAGAGAATCAGAGACTATGAGGGAAAGAAGGTGA 297118 30 100.0 37 .............................. ATGCTTGCCTTGCCGTTCAACTAGCCAAACAAGATTT 297185 30 100.0 36 .............................. TCCTCAATCCCTGACAGATTGTGCGAAGAAAGCGTA 297251 30 100.0 36 .............................. ACCTTCCGTTAGTAACATGGAGTTGCACAGCACGTT 297317 30 100.0 34 .............................. TAGTGACATGTACTGCTCAACTATGTCTAAATAG 297381 30 100.0 35 .............................. AGAATCGACATTCTATAGTTAAACTCGTTGTAACC 297446 30 100.0 39 .............................. ATTAATGGACTAGAATGTAAGATCACATTACCGAATCGC 297515 30 100.0 37 .............................. GCGCTCCCCATTCGACCTACTTCGGCACCGGAGGTAT 297582 30 96.7 0 .................A............ | ========== ====== ====== ====== ============================== ======================================= ================== 10 30 99.7 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AGGCAAATGGGCTGGTATGTGTGGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGTTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAGTAATTTCGTTGTTTGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGTAAAAGCGGGAATAAGAATCCTAAAAATCTGTCGACCGTCGGTAGCGTGGAAATTAGGGGGCATCGACAGATTTTTGTTAAGCGTTGGTGTCACCAGATTTGAGACCGTTTTTGGAGGTTGGGTTGTAAGGTTCGGGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGTGTTGATGGAGCACCT # Right flank : TAATAACAACCGAATTTTTGAGGACTAAACCGTGATAGTCTTTATCTAAATAATATGAATCCAGACTAGATTACTCACAGAAGCAGTGTTTCTATCCATTTTTTATAGAATCAATTATCATTCAACAATCTCTAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACTGTATAGAAGGAGGAGTTTTTGCGATGACGAAAATTGGATTTATTGGTGTTGGGGTTATGGGCGCTAGTATGGTGCGGAATTTGATGGCGGCGGTGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCGATCTGGCATGAGACACCGCAGGATTTGGCGCCTAAGGTCGATGTGCTTATCACGATGGTTGGATATCCGACTGATGTGGAGGAGCTTTACTTGGCGGAGGACGGGCTGTTGACTACGCTTCGTTCGGGAGCTATTGCTATTGATATGACGA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 90993-91488 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARPA010000005.1 Listeria booriae strain FSL L7-1769 NODE_5_length_252430_cov_31.022108, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 90993 36 100.0 30 .................................... GAAGATGAATTAAGACATTATCATGAGACG 91059 36 100.0 30 .................................... TGGGCTTGAGTTTTAGAATGAGGTGAGCGA 91125 36 100.0 29 .................................... ATTGGCGCCCTAAGCTTCACGTGTTGCAT 91190 36 100.0 29 .................................... TGAAAAAGATATAGCAGATGAAGAAGGTG 91255 36 100.0 30 .................................... CTAATGAGTATGCAGATGAAAAAGACTTAG 91321 36 94.4 30 ..............T.G................... AAACGAAAAAGGCATACATTAGAAAGTCTG 91387 36 97.2 30 ................G................... GTGAATTAGATCAAGCAATCGCCAAAGCCT 91453 36 86.1 0 ................G..........T.T...TA. | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 97.2 30 GTTTTAGTCCTCTTCTATTTTGAGGTACTCTAAATC # Left flank : ATCAGAATACTGTACAGATATCTCCATATCAAATATCTTCGAAAAATCATCAACACTTGGCAGTTTCTTTGTACTAATAATTTCTTCGCCTTGAAGTGTGATAGGTAACGCCTTGCTACCATCTTTCTTCAATAAACGCATAACCTCATCATTTTTGAGAAACGGTTCTAGCGAGTCTTCCAAGTAAAAAGCATCAAGAACTATTTGCTCCTCCTTTACGAAGAGATAACTTTCTTGGAACTCCTTGTCAAAAATAGAATTGAATAGCTCTAGCTCTACTTCATCAGACTGTTTTAGACTGTCTCGTGAGTCGAGGAAGAAAGTAAGTTTTATCATTATTGCACTCCTAACTGCTTTCGAAACTAAAATAGGATACATCATTGTTTTAGCAAATAAATACTGCATCATTGACTACTAATCGGATGAGCATCACTTTGAATGCTCTATTTTCTATGGCTACTAACCTCCGATTAATTAGAAATAACTTATCCACAGTAGAG # Right flank : CTTTGTTCTTTTATTAATAATTGAAATACCCTACGTCACATCTCCAATAGCGCCTTCACTATACTACAATACTCTTCTGAAACTTGATTCGTTTCAATATAACTATCATTTAATTTTTTCCCACTTAAATGTCTCAATTTTTTTGGTTTTAGGCTTGCTATTACCAATCTGTGGTTATTGTTTTTCAAGTTAGCAAACACAACACACATACCATGCTTATCTAAAAGATCGATTAATGATTTAGTAACTGCGTTCTTTAATTTGCGATCATATTTAAGCATTTCTCTTAATTTCTCGAATAAATACAATAACGAATATTTATTTTTTGGTGATAAATAATTTAAATGCGCTATACGATTTCTGTCATTTCTCTTAGAAACAAACAAGTTCTCCCCTACCATGAATTTATGAAGTTTTTCAATATGTTTTGGCCATGTTTTCCTGCGTATTTTTTTCCAATATTTTTCAGTAGTATTAATCCAGCTATCCACTCTTTCGGT # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTCTATTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 94953-95450 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARPA010000005.1 Listeria booriae strain FSL L7-1769 NODE_5_length_252430_cov_31.022108, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 94953 36 100.0 30 .................................... AAACTATTATAAACGAATATCAAAAGTGCT 95019 36 100.0 30 .................................... ACGAGTATTGAGGAAAATACTCGTGAAACT 95085 36 100.0 30 .................................... TGAATACCGACCGCTAGGCCCATTGATACA 95151 36 100.0 29 .................................... TCAATGATTTCGGTCATGCTGCCGCAATT 95216 36 100.0 30 .................................... ACAGGCGAAAACTTTACCTATGACGACGTT 95282 36 100.0 30 .................................... TCATTTGGTAATACTGTAGCAAAAATGATA 95348 36 94.4 30 ..........C...C..................... AAATTCGACAAAAAGCTAGAAAAAGCGATA 95414 36 83.3 0 ................A.........TG.A..C..A | A [95443] ========== ====== ====== ====== ==================================== ============================== ================== 8 36 97.2 30 GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAATC # Left flank : GTAATACCGCTGACATTAATTCTGTTATTTCTTTATTGATTGCTTTGTTGATTGCTATTTTACGTTTATCTTTTTCTTTTTTGTTGGGTTTCCTCACTGTTTTGTTGAGAATACTCTTATAAAACGACTCTTTCTTTTTATCAAATATAATTTCTTCTGTCTTGTTCTCATCAATACCTTCATAAACCAACTGGCCTTCTTTACTTGTCCTCTCCATTACGATAGTTCTTCCATCAACTCTCATTTTGGTGATTTTCATTTGTCTGCTCAGCTCCATTTAGTTTTATAGTTGTATAGCTAAATGTTTCCACCTTCATACGTGTCTGATATTGCTAATATTTATCAATATATTCATTATACAAGAAGGTATTGCGCAAAACAACATCCATTGGCAATTATCCACTTTGCTAATAATTGAATAAAGCCATAAAAACTACTGATCCAATTCTTTGAATCACAGTTTTTATGGCTTTATTGTCGAATACTTATCCACAGAAGAG # Right flank : ATCTATTTTACTTTCAACAGTTTAACTATACCAGATTATTAGTAACTCTTCATCTTCGCGTAATCACACGTACTAAGTAACTGTATTTAGCTATAATTATGGCTTTTATAATACGAAACGTATTCATCAATCTTTAGGATACTTAACACCAAACGATTTTGAAAGAAATGCGAATTAAATTCTATTTATTTTTGTCCAAGATATTGACAACACATCAATATCGCCAATCGTTCACTTTACTCATCTAATCATATCTAAAAAGGATAGGAAGTCTTTTGCAATCCAATAAGTATTTTCTTCATCGGTTGATTCTTCAAACTGAAATGAGTCATCCCAATAATAGATACCTTCAAATTCTCCCTCGCAAATCATTACAATCATTCCTTGCATGAGATCATCGCCAATAATTATTGAACCTTCCATCATATCTTCTTTTAGTTTTTCCATCCACGTCTCTATATTAGAGGCACTTTCCCCAGTGTTCACACCATATAGCACAT # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 17709-15252 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARPA010000003.1 Listeria booriae strain FSL L7-1769 NODE_3_length_340612_cov_32.251689, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================================================== ================== 17708 36 100.0 30 .................................... AAAGATACGACACATGAGGTGGGTTCTACT 17642 36 100.0 30 .................................... TCATGGTAGAGCAAAAGAACAAACAACCAT 17576 36 100.0 30 .................................... AAGCGTTGGAGAAAGGCATGGTTTTTCATT 17510 36 100.0 30 .................................... ATAAAGAAACTGCGGATGGGCATATGTTCT 17444 36 100.0 29 .................................... TGAAAAAGGAGAATGATACATGGTATTAG 17379 36 100.0 30 .................................... CTATTTTCTACTTGCTTTCCGTCACAGTAA 17313 36 100.0 30 .................................... GTACTTCAATCCATCAATGATAATAAGATT 17247 36 100.0 30 .................................... CGGTTATTACTAACGATAAGGCAAGGTATA 17181 36 100.0 30 .................................... GTAGCGAACGGCATATTAAATATTGAAACG 17115 36 100.0 30 .................................... CTTTTTATTGGATAATTGAGGTTCTTTCAT 17049 36 100.0 30 .................................... TAGTCTTCTCTAAGGATATATGCCGGATTA 16983 36 100.0 30 .................................... CACAACTGCCGCATGTACAATAACGCCTTT 16917 36 100.0 29 .................................... ATAAAAGGACAGAAATGGCTTGTGACTCA 16852 36 100.0 29 .................................... TTTCGCTCGTCCTCTTTCGATAAGCAGGC 16787 36 100.0 30 .................................... CCTGAAAGTGATGCTAAACCTGCACCTGAG 16721 36 100.0 30 .................................... ACAGAAAAGGTGAATCAACTGCACTATTAA 16655 36 100.0 30 .................................... GAAAGCGGGTGAATAAAATGGTACAAGTGA 16589 36 100.0 30 .................................... TGGGTAGTGACAAGGGCTTCCGCATTGACC 16523 36 100.0 30 .................................... TGCAAATGGTGACATTAGTTTTGATGAGCT 16457 36 100.0 30 .................................... TAAACACAATGTGGTTGTTTCAAACGACTA 16391 36 100.0 30 .................................... GCTAGATAAACGATAGCCTTATCTAGCGTG 16325 36 100.0 30 .................................... CGTCTGTCGTTAAATAAAAGCGCCTTGCAA 16259 36 100.0 30 .................................... AAATGAAGGGAGAATGTATCGGCAAAAGCC 16193 36 100.0 30 .................................... AGATACACTGGAAGCACTTTAAAAAAATAG 16127 36 100.0 30 .................................... TAATCTTCTCGCTTTTCTGTCCAAGGCACA 16061 36 100.0 30 .................................... TGAAAACGATGAACGGAATTTAGAAAACTA 15995 36 100.0 30 .................................... AGAACTCGTTGAACAGTTTGAAAACTGGGA 15929 36 100.0 30 .................................... CGTATATAAGGTGAAACCGCCTAAATTTTG 15863 36 100.0 29 .................................... ATGTTTGGTATTGACAGCTTCGAAGATTT 15798 36 100.0 30 .................................... ATATCAGTGCGGTGATAACTGATCCACCTT 15732 36 100.0 30 .................................... CAGATAGTAGGGCAGTTCAAGCCGCTTATA 15666 36 100.0 30 .................................... TATGAATAGTTTTATTCACTAAAAGTGTTG 15600 36 100.0 30 .................................... ACAATAAACATATTAGACCTAAATAAAAAG 15534 36 100.0 29 .................................... TAATTCTGTTATTGTTTCGCTTGTTCTCA 15469 36 100.0 30 .................................... GAACTAGCGTTAGGCTGTGTACGCAAATTT 15403 36 100.0 79 .................................... CGGCGCAATAGCCGGGGGGCGCATTAGGCGGATTTGGGTATTAGGAAACATATATTACGTCATAGCGTATAATATGGTT 15288 36 75.0 0 ...................C...AAA.G.C...CCA | C [15256] ========== ====== ====== ====== ==================================== =============================================================================== ================== 37 36 99.3 31 ATTTTGGTACTCTCTTAATTTTTGGTATTAGGAAAC # Left flank : ATATTATAAAACTAATACTGGGTATGAGTATAACAAAACCAACCCTTGTGTTTGTGGAGGGGTTTAGGTCTGGTCTGAATGATATAGAATGTGCAAATGCAGAAGGAATGTTACGGGAAATGGCTAGAAGAGGTATGCATGTTATTGTACTTGATGATAATCTAGTCGGTGCCTCTGTAAATTACTATTACCAAGATTTGATTGTAAATAAACTAGAAATATTGGGTGTTAAAAAGATTATTCTAGAATCCAGCCCTATCTTGAGTAGCTCTGAAGACTTTCGACAAGCGATAAATTGGTCTATAGAGGCTGTGGATAAGTCTAAGGGGAAAGTAGTGGAATTGGAGCTGCAGTCTGTGGATAACTTATGTATTTTTACATTGGTCTATTTAATTTTCACATTTTTAAAATGGCCACTAATTGTTGATTTTAGAGGGGTTAGGAGTGATTTGATAGAATATCTTGCAGAGATTGTGAGTGGTGAGGTATAATTAGGAGGT # Right flank : TTGGCTAAAGAACAACATAAGAATTTCATAATGTGTTGCAGGTAATTGCCACAAATGTAAAGGCATATGTTAAACTATTTATTAAAACAAGCAACAGTCGGAGGCGTATATATGCTTTTTTTAGACAAAACAATCGAACTAAACGATACAGAAATGACGATTTACCACTATGTAGTCGGCAATTTAGACACGGTCATTTACATGCGGATTCGGGATTTAGCCGATGCCACCCATGTTAGCACAACGACAATTTTACGGTTTTGCCGGAAGTTTGGATGTAACGGTTTTTCTGAGTTTCGTGTGAAGCTGCAAATGTATGCGCAGAATCGGACGAAAATAAGTGTGGACATGTCGGATGAGACAACGTATATTGATTTTCTAAAACGCACGGCTCAGCCTGAATTCAAGGCGAATATTGCCCAGTCTGCGAAAATTTTACGCGATGCGGAGTTGGTTTTATTTGTTGGCATCGGGGCGTCCGGAATTATTGCTGAATATGG # Questionable array : NO Score: 3.13 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTGGTACTCTCTTAATTTTTGGTATTAGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //