Array 1 642502-644648 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028896.1 Streptococcus thermophilus strain CS5 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 642502 36 100.0 30 .................................... TGTTTGACAGCAAATCAAGATTCGAATTGT 642568 36 100.0 30 .................................... AATGACGAGGAGCTATTGGCACAACTTACA 642634 36 100.0 30 .................................... CGATTTGACAATCTGCTGACCACTGTTATC 642700 36 100.0 30 .................................... ACACTTGGCAGGCTTATTACTCAACAGCGA 642766 36 100.0 30 .................................... CTGTTCCTTGTTCTTTTGTTGTATCTTTTC 642832 36 100.0 30 .................................... TTCATTCTTCCGTTTTTGTTTGCGAATCCT 642898 36 100.0 30 .................................... GCTGGCGAGGAAACGAACAAGGCCTCAACA 642964 36 100.0 30 .................................... CATAGAGTGGAAAACTAGAAACAGATTCAA 643030 36 100.0 30 .................................... ATAATGCCGTTGAATTACACGGCAAGGTCA 643096 36 100.0 30 .................................... GAGCGAGCTCGAAATAATCTTAATTACAAG 643162 36 100.0 30 .................................... GTTCGCTAGCGTCATGTGGTAACGTATTTA 643228 36 100.0 30 .................................... GGCGTCCCAATCCTGATTAATACTTACTCG 643294 36 100.0 30 .................................... AACACAGCAAGACAAGAGGATGATGCTATG 643360 36 100.0 29 .................................... CGACACAAGAACGTATGCAAGAGTTCAAG 643425 36 100.0 30 .................................... ACAATTCTTCATCCGGTAACTGCTCAAGTG 643491 36 100.0 30 .................................... AATTAAGGGCATAGAAAGGGAGACAACATG 643557 36 100.0 30 .................................... CGATATTTAAAATCATTTTCATAACTTCAT 643623 36 100.0 30 .................................... GCAGTATCAGCAAGCAAGCTGTTAGTTACT 643689 36 100.0 30 .................................... ATAAACTATGAAATTTTATAATTTTTAAGA 643755 36 100.0 30 .................................... AATAATTTATGGTATAGCTTAATATCATTG 643821 36 100.0 30 .................................... TGCATCGAGCACGTTCGAGTTTACCGTTTC 643887 36 100.0 30 .................................... TCTATATCGAGGTCAACTAACAATTATGCT 643953 36 100.0 30 .................................... AATCGTTCAAATTCTGTTTTAGGTACATTT 644019 36 100.0 30 .................................... AATCAATACGACAAGAGTTAAAATGGTCTT 644085 36 100.0 30 .................................... GCTTAGCTGTCCAATCCACGAACGTGGATG 644151 36 100.0 30 .................................... CAACCAACGGTAACAGCTACTTTTTACAGT 644217 36 100.0 30 .................................... ATAACTGAAGGATAGGAGCTTGTAAAGTCT 644283 36 100.0 30 .................................... TAATGCTACATCTCAAAGGATGATCCCAGA 644349 36 100.0 30 .................................... AAGTAGTTGATGACCTCTACAATGGTTTAT 644415 36 100.0 30 .................................... ACCTAGAAGCATTTGAGCGTATATTGATTG 644481 36 100.0 30 .................................... AATTTTGCCCCTTCTTTGCCCCTTGACTAG 644547 36 100.0 30 .................................... ACCATTAGCAATCATTTGTGCCCATTGAGT 644613 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ============================== ================== 33 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATGGATTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGCTGTTTCATTTTAGTTACCGTATAAGATATTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCATGGTCTGTGGATCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 893919-894171 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028896.1 Streptococcus thermophilus strain CS5 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 893919 30 100.0 42 .............................. GGAAACGCTTTCTAGCTCGCTATAATTACCCATTCCTAGAAA 893991 30 100.0 46 .............................. GGAAACTCAAAATATGTTATTACCTTGTATTTCATAATTCAATTAA 894067 30 96.7 45 ........................A..... GGAAACCCACTTGCTGTGTACATCCTACCAGTTCCGCCTATGATG 894142 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================== ================== 4 30 99.2 45 GATATAAACCTAATTACCTCGAGAGGGGAC # Left flank : AGAGTTTGATTAGGGCTTTTAGAGAACTTGACCCTAGTCTCTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAACCTCAGCGAAGAAGAGCGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATCCGAAGTAACAAACGTAGACTTAAACTCTCGAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAGGTCAACCTGTCAAGAAATGATTATCAGTCTCTCCTTAAGGATATCGAGGGCTTCTACAAGGCTGATGAAGAAGACAGCATAATAGTGTATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGCCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGACCTTTAATCATATGGTACACTATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGCCTCTAGCAACTGCCTAGAGCACAAGATATGGG # Right flank : CTTTTTTGAAAATTTTGAAAACATTATTGACACCGCTTCCAGAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCAATGAGTTGAAAAGTACTTTCAGCTTTTGGGTTTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTGGCTGTTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCGACCAAGGTAATCCAAGGGAAAGAAAACACGCAGTGGGTTGTACATCTGCTCACAGACGACATCGAGGATAAGGTTTTTATGACCTTATTACAGATTAAAGAGGTGTCCTTAAACGATCTGCCTAAACTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGGACAGATAAACTGTTAGAGATTTTCAATAGTGAGGAAAATCAAACCTATTTTTCAATTATTT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACCTAATTACCTCGAGAGGGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 3 964595-963832 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028896.1 Streptococcus thermophilus strain CS5 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 964594 28 100.0 33 ............................ TATACCTATATCAATGGCCTCCCACGCATAAGC 964533 28 100.0 33 ............................ CGACACCACTAGGGCGAGTCTGAGCGCCCCCAG 964472 28 100.0 33 ............................ CGCAACCCCTCCTTAGACATGGGAACAGTACTA 964411 28 100.0 33 ............................ CTGTATTATCGGCGAATAGATCAGATTCTTCTG 964350 28 100.0 33 ............................ ACCCTTACAAGGCTGATAGACCTTTGTCGTTTG 964289 28 100.0 33 ............................ CTCGTTTAAATTTGTAGTTATCATTAACAATAT 964228 28 100.0 33 ............................ CAAGGTAAAATTGCCGACAATGTTGGAACGTTG 964167 28 100.0 33 ............................ TATACATTACCTCATTTCCAGCTGAGAACATTG 964106 28 100.0 33 ............................ TCAGCGCCTCGACAAGCATCAAGAAGAACAGAA 964045 28 100.0 34 ............................ TGTACTGGTTGAGTATTCAAGGTAGGTGTGCCAC 963983 28 100.0 34 ............................ ATACTCAACTTCCTTACCCTTAACCCCTTTCAAA 963921 28 100.0 34 ............................ TGGTCGTGTGTTTGGCATTGGCTCAATGGGAACA 963859 28 96.4 0 ..........................T. | ========== ====== ====== ====== ============================ ================================== ================== 13 28 99.7 33 GTTTTTCCCGCACACGCGGGGGTGATCC # Left flank : GAGAAAAAGAATACAATCATTGAGATTGGAGCTGTCAAGTTTAATGGACAACAAGTAGAGGAATTTAATGCTTTGATTAAGTATGAGGAGAAATTACCTCCTACAATTTTTAAATTGACAGGTATTTCTAAATCCTTATTAGATCAAGAAGGACGTGATTTAAAAGAAGTACTTTCTGAATTCTTATTGTTTATTGGTGATTTAACTTTAGTTGGCTATAATATCCATTTTGATATTCAGTTTATCAATAATAAACTGAATAAATTTGGTTTACCCTTATTAATAAATAAAACTCATGATATAATGAGATATGTCAAGGATGAGAAGTTATTCTTGGATAATTATCAATTGCAGACTGCCCTAAAGTCATATGGAATCGAGGATTCAGTTCCTCATAGAGCTTTGAAAGATGCTAGACTAATCTATCATTTATCAACTAAAGTAAATAAATTCTTAGCTAGAATGAAAGAAAAGTCTTAATTCCATTGGGATCTTTTAGT # Right flank : TACAAATTTAGGTCATATGGAGATACGACAATATCAATCGATTGGTTGAGGTCTCTTTTTAGATTTGTTAATTAGTTGATTACTTTTTAAGTATTGCCGTTGTAAGCAGCATATCTTAAAGATAGAGATGCTGTAAAACTTTCTCATAGACTACTACATATTGTTTTAGAGCTATGTTTTTTCTAATGGTTCCAAAACAATCGCTTTCTCTTTATATGCCCACCAAAAAAAAGCCAGTGGCTCTTTTTAAATATCATCTTAATAACCAGGTTCAAAGATTTCAATAATTTGAGTCAGATAACCTGCATGTAAACCGATTCGATAGTCAACATTTGGCAAAGTCTTAACCAAATCATTCAGTTCTTTATCTTTGCTAAACTTATCAGCCAAAACTGGTAATTCAACGACAAGGAGTTGTGAGTGATCTAGTTGGAGGTAACTACTGTTGACCTTGATATCAGGACGAAGTAGTTTAAATATCGCTTTATCCGAAGTTTGGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 1378727-1377899 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028896.1 Streptococcus thermophilus strain CS5 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1378726 36 100.0 30 .................................... AAATTCTAAACGCTAAAGAGGAAGAGGACA 1378660 36 100.0 30 .................................... TACTGCTGTATTAGCTTGGTTGTTGGTTTG 1378594 36 100.0 30 .................................... TTCCTCTTGTAAACATTTTATTAATAATGT 1378528 36 100.0 30 .................................... TATCCCAGAGAATGGAAGAACAATTATAGA 1378462 36 100.0 30 .................................... TATGAATTGTCAAATTAACGGTTGCGCTAA 1378396 36 100.0 30 .................................... CGATGGAAATGATGGCTTGCCAGGTAAGGA 1378330 36 100.0 30 .................................... AATGGGAAAGTAGCTATATATGATCCAGAG 1378264 36 100.0 30 .................................... GAAGGCACAAGAAAGTCAAATGCGTAGCGC 1378198 36 100.0 30 .................................... AATTTTAACAGATATAGTGTAATCGGTATT 1378132 36 100.0 30 .................................... CTATTACTATACTTCCGAAGAGATTGCAGA 1378066 36 100.0 30 .................................... TATCCCAGAGAATGGAAGAACAATTATAGA 1378000 36 100.0 30 .................................... TATGAATTGTCAAATTAACGGTTGCGCTAA 1377934 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTAAAATATGAGAAGGAACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //