Array 1 17270-17438 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_ALLW01000049.1 Streptococcus suis 88-1861 Contig00049, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                  	Spacer_Sequence                    	Insertion/Deletion
==========	======	======	======	=================================	===================================	==================
     17270	    33	 100.0	    34	.................................	TCCACCCAGACACCCCGACGACCAGGTACAGAAC 	
     17337	    33	 100.0	    35	.................................	GAGATGCTCTTAGGAACTAAAGACACAGGTACATT	
     17405	    33	  90.9	     0	.........T.................A...G.	|                                  	T [17433]
==========	======	======	======	=================================	===================================	==================
         3	    33	  97.0	    34	GTCGCACCCCACACGGGTGCGTGGATTGAAATT	                                   	       

# Left flank :   GCAAAGGCTGTTCGAGGCGAGTTGGAAAGTTATCCTCCGTTTATGATTTAGGAGCTATATTATGATGGTATTAGTGACCTATGATGTCAATACAGAGACAGCAGCTGGACGAAAGCGGTTGAGAAAAGTTGCCAAGTTGTGCGTTGACTTTGGTCAACGTGTACAACATTCTATTTTCGAATGTTCAGTCACTCCAGCAGAATTTGTTGAAGTAAAAAATAGATTGCTGGAAATAATTGATAAGGAACAGGACAGTATTCGCTTTTATTTTCTAGGAAAAAACTGGCAAAATCGAGTGGAAACGATTGGACGAGATACTAGTTATGATCCGGATCAAGGAGTCCTTCTGTTATAGATTATCTCTGCGAATCGGACTTACTCATAAAATGCGAGGAGATTCGCGTGAAAAACTTATGAAAAAGAGTGAAAATAGAGTGAATTTGAGATATATTCTATATCTATAGAAACTTTATTTTTACAAAACAGTGTCTAATGGCACT
# Right flank :  TGATAATCTGATATTCATTTCCTCAATAAAATATTTTATCAGAAAATTCAGATAAAACCATATGTGATTCTTCTAATATGTTTGATAATATTTTCTAATTCTTCTTCCCCTCTTTTTTAAATTTTCTTATAATAACTTACCCACTCATGCTATAATAGTTATATGAGTTTATAAAAGGAGCATGAAATGTCAAACTTAAAAGAGCAGGTTGGTATTAAGGCGGCGGAATTTGTTACGGATGGTATGGTTGTTGGTCTAGGGACTGGGTCTACAGCTTACTATTTTGTTAAAGAAATTGGCCGTCGGGTTGTGGAGGAGGGGTTACAAATTATTGGTGTAACGACCTCGCATGCTACGGCAGAGCATGCTGCGTCCCTTGGGATTCCACTAAAAAATATCGATGAAGTTGAGTATGTAGACTTAACGGTAGATGGGGCTGATGAAGTAGATGGAGCCTTTAATGGAATCAAAGGTGGCGGTGCGGCCTTATTAATGGAGAA

# Questionable array : NO	 Score: 5.21
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCACCCCACACGGGTGCGTGGATTGAAATT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [7,7] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-5.10,-9.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-5] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [9.41,0.37   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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