Array 1 372993-374083 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTJR01000002.1 Listeria monocytogenes strain FSL L7-0355 NODE_2_length_379082_cov_68.398765, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 372993 36 100.0 30 .................................... TATTTACCTCGTAACAATTACAGGCGATGC 373059 36 100.0 30 .................................... GAAGTTAAATGACATGATTCAATTCATGCA 373125 36 100.0 30 .................................... ACCAAAAAACGGCTTTGGACAAACTACCAT 373191 36 100.0 30 .................................... GGAAATATATTTTAATTAACTAAAACACTG 373257 36 100.0 30 .................................... TGGCGTTAATTTGTATGTTGTTGTCATCGT 373323 36 100.0 30 .................................... GTATTCATGTATAATAAAATCATTTCCATC 373389 36 100.0 30 .................................... ACTTGTTTCTGCTTTTGTTTGTTGCAAGTA 373455 36 100.0 30 .................................... AGCAACCTACAGCAATTAAGAAAGCGCAGT 373521 36 100.0 30 .................................... AAATTTGATTGATGGCAAATATTGGACCTA 373587 36 100.0 30 .................................... TAGTTTTTCTTCGTCCTCTAAACGCAAGCT 373653 36 100.0 30 .................................... CTTTGTTGAATGCATCATCAACAGCTTTTC 373719 36 100.0 30 .................................... CTGCGACTTCTATGTACTCAATGTTTCGCT 373785 36 100.0 30 .................................... GCTGAAATATTGCGATTTACGTCGGTTGTC 373851 36 100.0 30 .................................... TAGAAAATGCGATTGGAGAAGTTCCGGACC 373917 36 100.0 29 .................................... TATACAGTGGGCATACGCATTAGGAACAA 373982 36 100.0 30 .................................... TTTATTACATTTATATTAGCTCCCAGCACA 374048 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 100.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGTGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTTATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : CTTCTTTTTTTTTGGTAAAAAGAAAAGCCCGGGTTTTAGAACTATGTTATATTGAACACCAATGTCTAAGAAACAAATATTTTCATAAATCAGGTCTTAGTAGATTTTAAAAATGACTACAAAAGTTTAAAAGGGAGATTCCACAATGAAAAAGACATCAATCATTTTTATTTTTTGCGCATTCCTCCTAACAGCCTGCTCAACCATCCAAAAACAAACACAAACCACGGAAGCTACCGGCACAATTGAACAAGTAGAAACGGAATCTATTTTAATCAAAAATTTCAAAATAAAAAACGATAATAACACGCCAGAACTGAGTGTGCGGTTCCACATCAGTGAAAAGTACCACGACGAAACGGGAAACAAAATAAAACTAACCGAACTAAACAAAAATGACAACATAAAAATCATTTTAACAAAAGATTTCCCAATCCAAGAAACCTCGCCAGCCCAAATAGACCCAAAATACATACAAAAAATCATCCTGCTAAACAAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 291071-291812 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTJR01000001.1 Listeria monocytogenes strain FSL L7-0355 NODE_1_length_1468157_cov_49.135183, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 291071 29 100.0 38 ............................. CTTTGATTTTCCCGGAGTTTAGCTTTGTGTTATTCCAT 291138 29 100.0 36 ............................. CGCGATCAAACTTATAGGTTGCATCAAGGGCTTTAC 291203 29 100.0 35 ............................. TTCTTAAATCTCATGGGTGGGAAAGCGTTAGACAT 291267 29 100.0 38 ............................. GTTTTTGTTATAACCGTGTCAAGTCCTTCATCTACTTC 291334 29 100.0 35 ............................. AACGTTTATCGATGGGGAACATATAGTGATCAACA 291398 29 96.6 35 ..............T.............. TCGAGTGTAAAGGTCCGGAAGTGCAGCATATTTTT 291462 29 93.1 36 ..........A...T.............. AAGCTTTTGCATTCTCTTCATTCTCTGCGTGATAGT 291527 29 89.7 35 .........TT...T.............. CTTATTCCATTTCCTGAGCTGAGCGATACTCGTAC A [291538] 291592 29 93.1 35 ..........A...T.............. AACAAGAAGTTATGTGGAACACGTTTGTTTTTAAT 291656 29 93.1 35 ..............T..........G... TTTGCTGATACGCTTTAAAACCATTCATGTTTTTC 291720 29 96.6 35 ..............T.............. GTTTTAGCCCGTGCTGTAAAAAACTGACTATCAGT 291784 29 75.9 0 A.....A.......TCA.A....A..... | ========== ====== ====== ====== ============================= ====================================== ================== 12 29 94.8 36 GTTTTAGTTACTTAATGTGAAATGTAAAT # Left flank : GCGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCATAGAAGTTATCGCTTGCGCAACCCACTCTGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAATACCGGAGACCGACAGAAAATTGTAAGTGGCTGGGGGAAGGGAAGTTTGGCGGTATTTGCTTGGGGGAATCTTCCGGATAAGGGGAGATTTTAGATGTTTTTTTGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCTCCTCCATACACAACTCCACCACCATCCATCAAACCAAAAAAACGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATAAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGCGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGCTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTACCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCAC # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 14815-16150 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTJR01000014.1 Listeria monocytogenes strain FSL L7-0355 NODE_14_length_23912_cov_95.866541, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================================================================================================= ================== 14815 36 100.0 30 .................................... TATTTTAGCTGATAATGCGACAAGAACGCG 14881 36 100.0 30 .................................... CGCCACTCTATTTTCGTACTCCAGCATACA 14947 36 100.0 30 .................................... AAACAGTTTGCAACTTTAGACGAAGGATTA 15013 36 100.0 30 .................................... CTAATCGTATTAATCCAGTAACTGGTGTAC 15079 36 100.0 30 .................................... GAGTAGCTTGTTTCACTACTACAGAAAGTA 15145 36 100.0 30 .................................... AAAATGACGGTGAAGCAGTACTTGGACTAT 15211 36 100.0 30 .................................... CACAGGCGTGGTTAAAATTTCCTTTGTTGT 15277 36 100.0 30 .................................... TTTTTCAAATGCATGTGTGTAAACGATGTA 15343 36 100.0 30 .................................... TATTCTGATTTGTTCTATCTTTCACAAGAT 15409 36 100.0 30 .................................... TGTTCGATAGTGGGAACTGTTTCATCCATC 15475 36 100.0 30 .................................... TGCCCATTTTGTTTTATCTTGAACTTCGTC 15541 36 97.2 30 ..................................G. AGAACTATTGCTTCAGTTATAATAGATATT 15607 36 91.7 35 ................T............A.....T GAAAAGAAGAGTTGGATGTTTCACTTGATGTTATT AT [15624] 15680 36 80.6 28 .......G...G...............A.GAC..G. TACCTTTAAAGGCTTCGATGATTAAAGC G [15701] 15745 36 88.9 29 ........A......A.........A...G...... AGATTAACGTGTAGAAGAGCCCTAGCAAT 15810 36 91.7 28 .............................G....TT TTATTCAGCACCAGGATTAGAAAGGCAC T,TT [15824,15828] 15877 36 91.7 137 ..............C..........A...A...... AAAAAAGATGTTAGAAGAATGAAAGTTCGATTGATTTTAGAGCTAAGTTATTCTAACAGTACACCTACTTATAAGAACTGAGCTATGTAATTTTTATACTTAGCAAACTATGGTAAACCGTTATCTCTTAGGAAATG 16050 36 94.4 29 .........T....C..................... TACTAATTTGAAATCTATTGTGGAGTGTT 16115 36 83.3 0 ..............C..........A...GT..GG. | ========== ====== ====== ====== ==================================== ========================================================================================================================================= ================== 19 36 95.8 36 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GATAAGCTGACTGCGACGATTAGCGAGTTGATTGGTTACGAGCTTCTGGAACATGAACTGGATTTAGAGGAAGATGAAATTACAGTTGTTGAATTATTCAAAGCTTTGGGTATCAAGATAGAGACAAAAAGTGATACCATTTTTGAAAAATTAATTGAAATAGTACAAGTCTATAAATACTTATCAAAGAAAAAATTGTTGGTTTTTATTAATGTATGTGCCTATTTAACAGAAGATGAGTTACTAGAGCTAAGACGATATATCTCGTTAAACCAAGTAAAAGTTTTATTTGTTGAACCTAGAAAGATAAAGGGATTTTCGCAGGTTATCTTAGATTCAGATTATTTTTTACAAGTGGAAAATGGGATGTAAGTATCCAAATGATCTTTGAAAACTAAATAGATTTTATGTGAACCATAAAATAAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGAAATCTAGGAGAATAAAAAAATTCTACGAG # Right flank : CTAAAGCTTAGGAGATTATATGGACAAAACAATGAGCCTATAAAGTGTTTTTTTAGTGAGCGGAAAATAAATATGTATCGCTTCTATACATACTCAAGAGATGAAATTAAAATATAGCATCAAAAATCATCCTGAGTAATAAGCCACTGTAGACTTTGGTTCCTTGTCATTACCTTTTAAAAAGTTTTTTCTTTGTCGTTTATCATCTACTTCTTCAAATTCTGCGTTTACTATGGCAAGTTAATGCAAGCTCAAACGAGGATAGGCTAGAGCTTAGCTTAATTGTGATTCTAATTTCATTCAACAAGCATGATTAGTACATCAAAAACATGGGAGAGAAAAAAACAACAGAAATCCTAGGGAATTTAAGTAGCGTATTGTTGATGGTTAGGTCTGTGTTAACTGGATTTAAGAGAAAGAAATTATTCGTAATGGATTAAGCAAAAAAATAGCCAATCTACTCTGAGTTAGTACAAGAATAGATTGGCTATTATAATAGG # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.51, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-26] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //