Array 1 799770-803228 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADAKP010000001.1 Deinococcus wulumuqiensis R12 1_RaGOO_pilon_pilon_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 799770 37 100.0 36 ..................................... ATTCATATCTCCACCCACGCCGAAGGAAACGGCACG 799843 37 100.0 36 ..................................... TGCTCCTCGCGCTGCTGGTCGGCGTGCTCGTGGGCC 799916 37 100.0 36 ..................................... TTCGGTCCCCGGCCGCCATGCAGCGCCAGGTGCTTG 799989 37 100.0 36 ..................................... CGGTGAGGCTCGCTCGCAAAAGGCCCTGAGCAAAGT 800062 37 100.0 35 ..................................... GACGGTCCAGTTCCTGCACGGCCTGTTCCACCGCA 800134 37 100.0 36 ..................................... ATTCATATCTCCACCCACGCCGAAGGAAACGGCACG 800207 37 100.0 35 ..................................... CCGAAGGCGCCCCGAAGATCATGTTCGTCTGGAAG 800279 37 100.0 36 ..................................... AGTGTCTGGACACCGAGCGCGGCACGGTGCGCGGCA 800352 37 100.0 36 ..................................... GTGTAGATGACCCACTCATCGCCGTTGGGCAGCACC 800425 37 100.0 33 ..................................... AGTCAATCGGCGTCTGGTCGAAGGCCAGAGCGG 800495 37 100.0 35 ..................................... TCTGCCATGTACGCGGCGTAACCGGGCGTGGCGGG 800567 37 100.0 37 ..................................... GAGGAACTGACGGGGCGGTTCGTGTGGGCGTCCCTGC 800641 37 100.0 38 ..................................... TGCCGCTGCCGGAAAAACCCCGGCCTGAGCCTCAGCCG 800716 37 100.0 36 ..................................... TGGTCCATATGGACACGGCCATCAACAGCGGGCCGG 800789 37 100.0 37 ..................................... AGTTCGGGGCTGAGTAGGGCCTGGGCTTTTGCTTCGA 800863 37 100.0 43 ..................................... CATGCCCTGGAGTCAGGCCTTCGTGCTGGCCCTGATCGCGTTC 800943 37 100.0 37 ..................................... GTGATTCGCGGGGACTGGGGGCGCCGGTGAAGCCCGG 801017 37 100.0 35 ..................................... TGACCACCACGCTGCTGCTGACCAACCCCGGCCCC 801089 37 100.0 35 ..................................... CGCCTCGGCTCCCGCTTCTCCTCCACCTTCTCCGG 801161 37 100.0 35 ..................................... GTCTCGCGCAGGATGATGTTCGGCTCCTTGAACGC 801233 37 100.0 35 ..................................... GTCTATAACCCGGACGGCACTCCCAAAATGGCCTA 801305 37 100.0 36 ..................................... AGTTCAAGCCGAAAGCGGCAGGTAGGTGTGAGAGGT 801378 37 100.0 35 ..................................... CAGCAGCCCGGAAATGAGGCGCGTGGGCTTAGGCA 801450 37 100.0 37 ..................................... GTGATTCGCGGGGACTGGGGGCGCCGGTGAAGCCCGG 801524 37 100.0 35 ..................................... GTCTCGCGCAGGATGATGTTCGGCTCCTTGAACGC 801596 37 100.0 35 ..................................... GGCACCAGTCGCTGATTTCTCGCTGGGAAGCAGAC 801668 37 100.0 35 ..................................... AGCCACGTCATCTTCTGGTGGCAGAAATCGGCAGA 801740 37 100.0 37 ..................................... GACTGACGCCGTAAACGTAGCCGGAATTGAGGGAGCC 801814 37 100.0 34 ..................................... GCTCAGGGCACGGTCATTCAGGGCAACGTGCCCG 801885 37 100.0 35 ..................................... AGCGCAGCACGCACGGCACGGTGCTGCTCACGCTC 801957 37 100.0 36 ..................................... CGCCATCATCGGGCCTATGGGAGTGACCACATGGCT 802030 37 100.0 34 ..................................... CCGAGTGAGCAGGTGCGCGAACTTGGGGCGTACC 802101 37 100.0 34 ..................................... CCCGCTCGGCCAGCGCCACAGCCTGGGCGTGTAG 802172 37 100.0 34 ..................................... CTGTTGCTGGCGGTGGGACTGCTGCCCTGCCCAA 802243 37 100.0 35 ..................................... TCCGCGACGGCGCGACGTGGCAGGAAGTCACCAGC 802315 37 100.0 35 ..................................... GCTCAAAAAGTGGGGCGACGAGACGCTAGACCTCT 802387 37 100.0 37 ..................................... AGTTGGACGAGATCCTCCAGGCGAACGAAAGCCTGAA 802461 37 100.0 37 ..................................... AGACGCTGCACGTCACCAAAGACGGCGCAACCCTCGA 802535 37 100.0 35 ..................................... TACCTGCTGTTCCAGGGCAACGCGAACGCCGCCAA 802607 37 100.0 34 ..................................... CCCGCGACGGCGAGTACATCGACGGCGGCGACAA 802678 37 100.0 35 ..................................... TGCGGCGTGCCATAGCTGTCGCGCTGGGTCAGCCA 802750 37 100.0 36 ..................................... GTCAGCGCAGGCTTGTTCATCTCGGCTTCGAGGTCG 802823 37 100.0 35 ..................................... CTCACGCCGAGCCATGTGCGGAGCCTCGCCCGGAA 802895 37 100.0 44 ..................................... CGGCAGAGGAGAGGGGCGGCAAGCGCAGGCCAAAGGCCGGGAAC 802976 37 97.3 35 .........G........................... GGTAGGGGAGAGGGCGCTTCGGGCATCGGGACGAA 803048 37 97.3 37 .........G........................... AGGAAACAGGGCTTGCGCTGCCTTCATCGCTTCGAAT 803122 37 97.3 33 ...........................C......... AGACAGCAGCGGCAGCAGCGAACTCCGGCGAGC 803192 37 94.6 0 ........A.G.......................... | ========== ====== ====== ====== ===================================== ============================================ ================== 48 37 99.7 36 GCCACATCGAAGAAGCCCAGCGTTAGGGCACTGAAAC # Left flank : CCCTGCTCGTTGAGGCCGAACTGGGGCTGACTTGCCCCTATGGGTACTGGCACTCGAGCCGCACCCGGCAAACCCATACCGTCCCCATAGATACCCGATTGCGAAGGCGTACCCTTCAAGCGATTGCCGAAGTGCGCGCTTTCATTGAGCTTGAGCGGTGCCCGCCTCCCACCTCAAAAACGGTAAAATGCTTGGAATGCGAACTGAGGAACTTCTGCGGAGATACGCTGTGACCCGTTCGCAAAAGCTGAGGCTGCACGCAGAGCCGCCTGATTTGCGAAGCGTTGTCACGGCAATTTTGCCGCTTTTCGGTGATGAGCAACCCAGAGATCCGCTCCTCATGGAAAATAAGAGTGTGTCAGACACACCGCAAATGGCCCTATCCAACGTCTCTCCTGTCATTTGCGACCAACATGGACAGGCTATACTTTTGCCGTGATGGAGGCATCACGCGCTACATGACAGCCCAAATGAATTTGAGAAAACGCGTGAAATAAGCG # Right flank : CACGAAGATCAAGAACCTGCGCCGGCCGCTGGCTCGTGGCTGGGCCGCTAGACCAAGGATTCGCTTACCCAGAATCGACCTGTCAACACGGAAAACAGCCAAGGCTTTTGTGCCACAGTTGTGCCACAGTTTTTCTGGAAAGCCTTGGAAAAAGCCGGAAAAAGCCAGACGCCTCACACGCAAAAACCCTCTCCCAGTGGGCGTTTTTGGAACATCACGGAAAATGCCGGAAAACCCGGATGAGTATTCGTAATCAGTAGGTCGTCGGTTCAAGTCCAACCCTCAGCTCCAAGAAAAAGCCCCGCCTAGCGCGGGGTTTTTGCTTTAGTGGTTTGCAGTAGGTGCGCCACCAAACGGGTTGTGCCACAGCTCAGTAGGTGACAACTTCGTCTCCAGCCGCGCCTGGCGGGCAGAAAGGACGGGTGAGCAGTTCCAGGAAAGCCCTGCATCGTTCGGGTTTCCAACGCAGGGCATCCACGAGATGCTGAGCACCGTGACGC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCACATCGAAGAAGCCCAGCGTTAGGGCACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.00,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 1869-59 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADAKP010000004.1 Deinococcus wulumuqiensis R12 4_RaGOO_pilon_pilon_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 1868 37 100.0 33 ..................................... AGCCAGGACTACCGCCACACTGCCCGTGCCATC 1798 37 100.0 34 ..................................... GTTTCATGGTCTGGCTCCTACGACGATGAGCGAG 1727 37 100.0 35 ..................................... TTGTTGCGCTCAATCCAGCCATACCCGCAGATGTC 1655 37 100.0 35 ..................................... TCGCGCATCTCGGAGCGCAACCTTGCGCGGGCGTG 1583 37 100.0 34 ..................................... TGGGGTTGCTGGAACTACAGGCACCCTGAACCCG 1512 37 100.0 36 ..................................... ACGTAAAACGTCACGGTGAAACAAGCCCGCCGCTTG 1439 37 100.0 32 ..................................... GATTACCGCCGCACACAAGGTGCCCTGAGCAG 1370 37 100.0 35 ..................................... TTCGGTATCATGAAGCCATGACCGGAGACATCGTG 1298 37 100.0 34 ..................................... CCCGCTCGCAAGGGTGAAGAGCTGGTCTACCGGC 1227 37 100.0 33 ..................................... AACTTTTCCGAACTGGGTCAGGACATACACTCG 1157 37 100.0 32 ..................................... TCGCCCCAGTGGAACGAGCCGCTGGAGACGAC 1088 37 100.0 34 ..................................... ATACCGGGCCACGCTGATAAGCGCGTCGCCCGCG 1017 37 100.0 35 ..................................... ACCTCGCTTCCGGCTACGCCGCCGCGCATTTCACC 945 37 100.0 34 ..................................... CCCCCGTCACCCTGCACCTGAGCATCGACGGCGC 874 37 100.0 34 ..................................... ACGATTAACAAGATGAACGGCGTGGCGCTGAGCA 803 37 100.0 35 ..................................... GCCGCGTGGTTGTGGGTGCTGCGGTTCGTGCTTGT 731 37 100.0 32 ..................................... TCAAGATTTGACGGGGACAGACCGTGAATCCC 662 37 100.0 33 ..................................... CTCCTGGTGGCTCAGGCAGCGGCGCAGGCCGGG 592 37 100.0 33 ..................................... AACGTCAAAACACTCGCCGACGCCTGCGCCTGC 522 37 100.0 34 ..................................... TCCGGTACGCAGACCATGCTGCTCATCACCTTGC 451 37 100.0 34 ..................................... TCGCGGTCCTCGGTCTGCCGCTGCGTCACGGCGT 380 37 100.0 35 ..................................... GCTCCCCCCAACACGCATCGGGGGTACCCCTCACC 308 37 100.0 35 ..................................... ACGCTAAATCTGGCAGGCAACCCGGCCTACTTCGT 236 37 100.0 33 ..................................... CGCAGCCAATCCACGTCCTGCATGGTGGCAGGG 166 37 100.0 34 ..................................... CCGATTGGCCGGTTCGCACCAGGTGGATGTTGTT 95 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 26 37 100.0 34 GTTCCGCCCGGCTGTGCGCTGGGCGGTGGATTGAAAC # Left flank : CAGGGCCCACTATCCGCCGTACCTCCACCGATGATTGACTTACTGGTCTGCTACGACGTGAAAACCGAAACCGAGGCCGGACGCCGCCGCCTGCGCCGGGTCGCCAAAATCTGCGTGGCGCACGGGCAGCGCGTTCAGAACAGCGTCTTCGAGGTCGGCGTCACCGACGTTCAACTGCTCCAGCTGCGCGAGAAGCTACTGAACGCTATGGACGTGACCGAGGACAGCATCCGCATCTACCGCCTGCGTCAGCCCCGCGAAAAATTCGTGGAGGCGCACGGCGTGGATAAGTACATGGATTTCAGCGAACCCCTGATTCTGTAGCGCGAACCTGGTGCGACGGAAAAGACCGGGAGGTTTCGCGCCGCCTAAAAAGTCCGTACAGGACGAGCCGCATGACAAATAGATATTTCCGATACGTCCCCCTTTCTGGACTTCGGCGCAGGGTTCGCGCAAACTGATGTCGGGAAGTCGTCTGGCACGTATTTAGACGATGAACT # Right flank : CACCGGGACGCCTACCGATAAGCATGACGACCAAGTGGTTCCGCCCGGCTGTGCGCTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCGCCCGGCTGTGCGCTGGGCGGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-14.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : NA //