Array 1 180815-181685 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZOM01000014.1 Escherichia coli strain HT2012040 NODE_24_length_316587_cov_38.350254, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 180815 28 100.0 32 ............................ TGGCAAAAGGCCGTCCGGCGCTGCCTCAGAAG 180875 28 100.0 32 ............................ GCTGTAAATTGGCTGACCGTCGCAAAATGAGG 180935 28 100.0 32 ............................ GCGCGCTGAATTGCCAGAATCGTGGGCGCACA 180995 28 100.0 32 ............................ AGTTTTTTACCCCACACCTCCATTTTCACATT 181055 28 100.0 33 ............................ AGGTCGCAACAAAATCCGGGTCAAACGATCCGT 181116 28 100.0 32 ............................ GTGAATCACGGCGCTTATTGCTGGCTGAAATG 181176 28 100.0 32 ............................ AGCTCAACGGTACGCGCCTGCTCGTCAATCGC 181236 28 100.0 32 ............................ AATACGCCCGACTTTTTGTGGCATTTCTGCTG 181296 28 100.0 32 ............................ TCGCCGAGATAACTGCGCACCTCGCGATCTGC 181356 28 100.0 32 ............................ GGCGAGCGGTCGGGGATCCCCTTATATAATTT 181416 28 100.0 32 ............................ GGCGCGCCCACCTCTTCCTCCAGCCCCGGGGC 181476 28 100.0 32 ............................ GGTACGCTCGGAACACAGCGGGCAGCACTAAC 181536 28 100.0 32 ............................ AACTGGCGCGACGTCCGGGGCAAACCTGGTGG 181596 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 181656 28 85.7 0 ....................A...C.CT | T,C [181676,181680] ========== ====== ====== ====== ============================ ================================= ================== 15 28 99.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 190742-191429 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZOM01000014.1 Escherichia coli strain HT2012040 NODE_24_length_316587_cov_38.350254, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 190742 28 100.0 32 ............................ GCACATTCCCGGCCTCTTGTTTCCCTGGTGGC 190802 28 100.0 32 ............................ GAAAACACCGGCGAGATCGTATTTTTTGCCGC 190862 28 100.0 32 ............................ AGCAAACCACGCTCGGTAGTGAACTACGCATC 190922 28 100.0 32 ............................ AGGAAGGTGGTAAGAAGCAGATTGCGCTGACC 190982 28 100.0 32 ............................ GTTCAATTATCAAATATCACCCGCGATATGGT 191042 28 100.0 32 ............................ ACATTTAAACTAACAATTGGTGAGCCTGATAT 191102 28 100.0 32 ............................ TTTCTGATGTACGGGCAGCCAGCGCGGATCCA 191162 28 100.0 32 ............................ GGTGCGAGCTCCTGCTCTTGTGACTGTGAAAC 191222 28 100.0 33 ............................ CCAGCTGGATGAACAAAGGCGAACCGCAAAAGC 191283 28 100.0 32 ............................ ACGAATGCGCTTACATCCTGGCAAAAGGGCGT 191343 28 100.0 31 ............................ AAAACATGGCGCTGGACCAGACCCGCAAGGT 191402 27 92.9 0 .......................-C... | T [191422] ========== ====== ====== ====== ============================ ================================= ================== 12 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCCTTTTTTGTGTAGGCCATGTCTGGTGCAAAAAAAAGCCCGTACTTTCGTACGAGCTCCTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGATTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTTTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGCCGGCTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //