Array 1 26509-24691 **** Predicted by CRISPRDetect 2.4 *** >NZ_OAEF01000016.1 Neisseria meningitidis strain Neisseria meningitidis isolate R950, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 26508 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 26442 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 26376 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 26310 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 26244 36 100.0 30 .................................... CTGAAAGGTAAGGAACGGGCGGCTTGTGAG 26178 36 100.0 30 .................................... ACGGCTGCCGCAACGCCGCCCGAAACCATC 26112 36 100.0 30 .................................... GAGCATCTATTAGGGGTGAAGGTAGATCTT 26046 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 25980 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 25914 36 100.0 30 .................................... AGAAATCAATACCATGAAAACCCCATGCGT 25848 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 25782 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 25716 36 100.0 30 .................................... AGACTTAGCACGTTTAACTTGCTTAACAAG 25650 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGGTCGAAAAATAC 25584 36 100.0 30 .................................... CAAAGCTATAAACACGTTTATCTGTTGTTA 25518 36 100.0 30 .................................... ATGGGGTATGCAATTACATCGCTTGGGTTT 25452 36 100.0 30 .................................... AAATTATACCAATGGCGAAAATCTCGGGCG 25386 36 100.0 30 .................................... GCTCAGTTGGAACAATGAATACATCTTGAA 25320 36 100.0 30 .................................... ATAGGTTCTATTAATACGTCTTTCGTCTTC 25254 36 100.0 30 .................................... TTTTCCAGCGCGATGAGATACCCGGCATAG 25188 36 100.0 30 .................................... CTTTTGCCGCCATCGACGCAGCCGACAGGG 25122 36 100.0 30 .................................... ACTTAATTTATTCAGTTCTTCTTTATGCCA 25056 36 100.0 30 .................................... TTCGTACCCAAAAAATCGACCGCGTAACGG 24990 36 100.0 30 .................................... ATAAAAAATCGAAAAAATCAAAAATACTAG 24924 36 100.0 30 .................................... CGTTTAAAGACAGATAACCGGATTCGCGTT 24858 36 100.0 30 .................................... CATGGCGGTCGTCATATGGGGGTTCCTTCG 24792 36 100.0 30 .................................... GCAAGATACATGGTTACAAGCTGCCCCCAT 24726 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 28 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //