Array 1 1512098-1513267 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP008856.2 Pseudomonas aeruginosa strain F23197 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1512098 28 100.0 33 ............................ CCAGGGCGTTGTTCGTTTCGTTGAAATCATTTT 1512159 28 100.0 32 ............................ AGGGTTTACCGGCGTTGATGTATGCGCTTCCT 1512219 28 100.0 32 ............................ ACATCGTCACGAAGTCGAGGGCGAAGAAATGA 1512279 28 100.0 32 ............................ TGGATGAACGCCTGCTGCTGGGTGGTCGGCTT 1512339 28 100.0 32 ............................ AAGAACATTGCGATGCAGTGGATGACCAGGAT 1512399 28 100.0 32 ............................ CAAGATCTGCCGGCTTCAACGACTGCCTTGAG 1512459 28 100.0 32 ............................ TCTTCAGCAGCTCGCTCTTGAGCTTGATTTCA 1512519 28 100.0 32 ............................ TGGGAGATCGAGCGGTACTCTGATGGCCTGAT 1512579 28 100.0 32 ............................ TTGCATCAAGCATGCATCCGCACGGTGATGTA 1512639 28 96.4 32 ...............T............ TGCCGGTAGCAGGGCATCACCAGACCAAACAC 1512699 28 100.0 32 ............................ GTCGACGTCGATGAACGCCGCGCACGGATGGA 1512759 28 100.0 32 ............................ TTGCTAAGCATCCACTGTGCCGCTCCTGTAGC 1512819 28 100.0 33 ............................ ACGTATCAGGCATCGTACTCGGCAAGGTGTTCT 1512880 28 100.0 32 ............................ TGCGGAAGGGGCCGGGCTGGCGCTGGCACCAG 1512940 28 100.0 32 ............................ ACGAAGTGACCGTGGTCCGCCGACAGGGAGGC 1513000 28 100.0 32 ............................ TGGGCCGGCGCCTACGCGGCGCATCAGCCGGT 1513060 28 100.0 32 ............................ TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 1513120 28 96.4 32 .............T.............. ATACTGACTCAGCCAGGGAAAAGTCACTTGGA 1513180 28 96.4 32 .............T.............. AGCGTGCCATGGCGGCGGTAAGTCAAACCGTT 1513240 28 96.4 0 .............T.............. | ========== ====== ====== ====== ============================ ================================= ================== 20 28 99.3 32 GTTCACTGCCGTACAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGTGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTTGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATAACCGCAAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2845847-2846901 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP008856.2 Pseudomonas aeruginosa strain F23197 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2845847 28 100.0 32 ............................ AACCAGGAACGAGCCATGACCATTGCCCTCAA 2845907 28 100.0 32 ............................ TTGCGCGATGGCGAAGTAACCGGCGTCCATTT 2845967 28 100.0 32 ............................ GTGCGGATGCATGCGTGATGTAAGGAGTCGAC 2846027 28 100.0 32 ............................ ATTTAACGATTCTCATTCTGTCCTCCTGCTAT 2846087 28 100.0 32 ............................ GATCAGGCTAGCCATGACGGGCTCCATTACGC 2846147 28 100.0 32 ............................ ATCATGACCCAGTTCAACATCATCACCAGCGA 2846207 28 100.0 32 ............................ ATCAAGGGGCCGAGCGTGCCGCGCAGCCTGCT 2846267 28 100.0 32 ............................ AGGAGTACATGCCGAGGGCGTCTGTGACCATA 2846327 28 100.0 32 ............................ TCGGACTCAGGCGGACTTGCGCCAGGCCATGC 2846387 28 100.0 32 ............................ TTTTCGACCGACGCGATGGCACAAGCAAACCT 2846447 28 96.4 32 .............C.............. ATGTAGTTGCCCTGCATGTTGATTTGCGTGGC 2846507 28 100.0 32 ............................ TATGACCCGTCGTACGACTACGCCTCGAACAC 2846567 28 100.0 33 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGAT 2846628 28 100.0 32 ............................ GTTTGCAGGAAGCGGCGCTATCGCACCGAACT 2846688 28 100.0 32 ............................ ATAAACTTCGGTTCCGTAGAGCGCTTCTCCGG 2846748 28 100.0 32 ............................ ATAGCTACGCCGAGCCAGTTGTAAGCTGACGC 2846808 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA ATAGGC [2846820] 2846874 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 18 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GCGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCACCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCATGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 2857195-2855425 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP008856.2 Pseudomonas aeruginosa strain F23197 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2857194 28 100.0 32 ............................ TTGTGGGCGCAGTTCTCCGCCTTGAGCCGAGC 2857134 28 100.0 32 ............................ AAGGGCAGATCAGCCGAGGGGAGGGCGGAGAG 2857074 28 100.0 32 ............................ AGTTGCCGGCTGGCTTCTTTGCGGTCCAGGCC 2857014 28 100.0 32 ............................ AACAAGCACACCGATCGGAATCAACATCAGCG 2856954 28 100.0 32 ............................ TGGTGGCAGTCTGGTGCAGGTCGTCCAGCAGG 2856894 28 100.0 32 ............................ AGCTGCGTTCGCCGCAGTTCTCGCACCGTGGC 2856834 28 100.0 32 ............................ AGGATCAGATGAACCTGCATTGCAGCTTCCAC 2856774 28 100.0 32 ............................ ACGACGCGCACCGCGTCTTCAGCACAGCGGAC 2856714 28 100.0 32 ............................ ATGGACTCTCCGAAACGCAAAGCTGGTGATGC 2856654 28 100.0 32 ............................ TGGAGCGTCTGAGGCTACGCATCGACGCCCAC 2856594 28 100.0 32 ............................ TCATGCCGATATGGAGACTCCCGCGCTTGCTG 2856534 28 100.0 32 ............................ TGATGGCCGGCATGAACCCTGCGTTTATCGCT 2856474 28 100.0 32 ............................ TCGGTTTCGAGGTCAGAAACGGTTATCAGTCG 2856414 28 100.0 33 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATTT 2856353 28 100.0 33 ............................ AGGCGCATAGTTGGCTCAGTGGAGGATTCGAGA 2856292 28 100.0 32 ............................ TAACCATCGCGCGAGTGGGTCTTGAGCCTGAT 2856232 28 100.0 32 ............................ TTCCAGCAGCGCTTCATGCGGCCTCCTGATCG 2856172 28 100.0 32 ............................ TGCGAGTTGCGTGAGCGCAACTAGCTCCATCG 2856112 28 100.0 32 ............................ AATTTGGCATTTCGTTTTCCTCTTCCCGTATC 2856052 28 100.0 32 ............................ TCGCAGCGGAATCCGTCGGACGTCTCGATCAC 2855992 28 100.0 32 ............................ AAGAAGACGACTGAACAGCCAGCGCCACGTCA 2855932 28 100.0 32 ............................ GACAGCCTCTGTGGCGGCGTAGTAGCCGCCGA 2855872 28 100.0 32 ............................ AGCGTGACCCGCTCTTCCTGGGCCTGCTTGAA 2855812 28 100.0 32 ............................ AGGCGTTCTCTGTCGGGTTCGGTCTTGTCGCG 2855752 28 100.0 32 ............................ AACCTGCGACGCTGAAGGCTTGGCATGGAGTC 2855692 28 100.0 32 ............................ ATGCCCAGCCTGCCGAGGTTACGACCTTGAGC 2855632 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 2855572 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 2855512 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 2855452 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 30 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCTCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATCCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //