Array 1 2260632-2260135 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP045927.1 Staphylococcus agnetis strain 1379 chromosome, complete genome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
   2260631	    36	 100.0	    30	....................................	ATATTCTTGTTTAAAGGGTTGGATAATCCA	
   2260565	    36	 100.0	    30	....................................	ATCCACCGACAATGATGTCGCATTTCCCTC	
   2260499	    36	 100.0	    30	....................................	TAACGATGACCGCACTATGACACTGATTTA	
   2260433	    36	 100.0	    30	....................................	GGACAATAAACCTGAGCCACTAACAGCACT	
   2260367	    36	 100.0	    30	....................................	CAATTATGACCAATTATCGAAAGAAACGGG	
   2260301	    36	 100.0	    30	....................................	ACTCTTCAGTGTCAAGGTAACGATAGAATA	
   2260235	    36	 100.0	    29	....................................	CCAAAAGAATCGGCGTTGTGGCGCAGAAA 	
   2260170	    36	  77.8	     0	T........................G.TTT.AT..A	|                             	
==========	======	======	======	====================================	==============================	==================
         8	    36	  97.2	    30	GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC	                              	       

# Left flank :   GACGTTCACGATGTACAATAACGCCATCTTCATTTTCTTTTTCATTATTTTCAGTGTGAGCTGCAGCTATAGTTAAAATGTTGTGGTCAAAATCAACGTGAATGTCTGATTTTGCCATACCTGGAAGTTCAGCGCTTACAACATATGCATCTTCACGTTCAGAAATATCTGTTTTAAAAGCTTGAGATTGCATTAAACCTTGCCCAAAATCTTTAAAAAGATCACTGGGATTCATATCAAAAATAGAATGATTAAATGGTTTTAATTGGAATGCCATAAAGCATCGCTCCTTCATATTTTAGAATGTCGCAAATATCAAGAAACTGAAATGGTAAAGATCACATCTAATCCTTTACAATCTTATTATACGACAAAGGTCAAAAATAGTCAAGGTCAAAGTATTGTGGTGGATGTAAATTAAAATTTATCCAAAATACGTAAAGATCAGTGATATCAATGGATTAGACAAACTTAAAAGTTATAGTATACTGTAGCTAGAG
# Right flank :  TGTGCTATTTATGAAATATCTATATAAGCGATCCATTTATTTTAGCGATAACCTCATAAAATTGTTTAACTCAATGAAATAAATGTTATTTAGGTGGAAGTTATAACACTCACTCTATAAAAAATATCAGAAAATTCTTGACTCAAATGGATCTTATGATAAAATAAATTTACAAGTACTTATTTGTGCTTATACCTAAAATTACAGAATCTACTAAAACAAGACTATATGTCGTGTTTATCCCACTAATTTATTAGTGGGAATTTTTTTGTTCTTCTTTTATAATAGTATTTAAAAGGGAGGGCAATGTATAAATGAATAATTATATACTAGGACTCGATATAGGTATTACCTCAGTGGGATACGGTATTGTAGATAGTGATACGCGTGAAATTAAAGATGCTGGGGTACGATTGTTTCCAGAAGCGAATGTAGATAATAATGAAGGAAGACGTAGTAAAAGGGGAGCGCGACGTTTAAAAAGAAGACGAATTCATAGA

# Questionable array : NO	 Score: 6.12
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:72.22%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [0.00,-3.60] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [8-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.28   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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