Array 1 461224-462532 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCUX02000001.1 Salmonella enterica subsp. enterica serovar Anatum strain HIY0181 NODE_1_length_678029_cov_40.505747, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 461224 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 461285 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 461346 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 461407 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 461468 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 461529 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 461590 29 100.0 32 ............................. CGCGAGCAATCCCATCTGACGTTCCGGAGACA 461651 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 461712 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 461773 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 461834 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACATGGAGTAA 461895 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 461956 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 462017 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 462078 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 462139 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 462200 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 462261 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 462322 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 462383 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 462444 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 462505 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //