Array 1 456172-457178 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXJB01000001.1 Salmonella enterica subsp. enterica serovar Worthington strain BCW_2037 NODE_1_length_575766_cov_4.0503, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 456172 29 96.6 32 ............................A ATGCCGCCACTTCCATTTCGTTCAAATGCCGC 456233 29 100.0 32 ............................. AGAGCAGCTTGCTCACTACCGGGGCAGAAGGG 456294 29 100.0 32 ............................. TATTTGGACAATCAGGTCGAGGTTCAGTATGA 456355 29 100.0 33 ............................. TCACAAATGCGAGGAGTCAGCCCAATGAGCAAC 456417 29 100.0 33 ............................. ACGGGACCGATATTCTGCTGCCCGGGGGCACGC 456479 29 100.0 32 ............................. GAGTTCAGTCACTTGAATGATGCGCGGGAATA 456540 29 100.0 32 ............................. GTCGTCTGGCATATGTGCGTAGCCACCTCGCA 456601 29 100.0 32 ............................. CGGATGATTCGCGCATGACTTGGGCTACTGCG 456662 29 100.0 32 ............................. GGATATCGAACTCTTACCGCCGACGATATTGC 456723 29 100.0 32 ............................. AGAGATTGATTAAATGAACAGTAACAAACTAA 456784 29 100.0 32 ............................. GCGCGTCAGCGTGGATTAACTCAACAGCGCTC 456845 29 96.6 33 ..........A.................. TCTGGTGCTGGCGGTTTACTGGGGAGTATTGGC 456907 29 100.0 32 ............................. GAGTTTGGGGGCACTATGAAGGGATCGATGCT 456968 29 93.1 32 .........C..T................ ACGTTTTGCGAGCCATCAGAAACCTTAAATGC 457029 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 457090 29 96.6 32 ............T................ AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 457151 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 465913-467653 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXJB01000001.1 Salmonella enterica subsp. enterica serovar Worthington strain BCW_2037 NODE_1_length_575766_cov_4.0503, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 465913 29 100.0 32 ............................. CCCCTCGCCCTCGATCTGGCGTTAGTTACTGG 465974 29 100.0 32 ............................. TCACACGTTAGATCAACAGTTGTGTCCGTATT 466035 29 100.0 32 ............................. GGCCTGATGAAAATTGCCGATAGCATGGACAA 466096 29 100.0 32 ............................. TTTACAGGTCATTTTGCTGTCCTCATTTTTGG 466157 29 100.0 32 ............................. TACTGGATATCAACCTGCCTGAGTTAAAGACC 466218 29 100.0 32 ............................. CCTTGTGTGCAATGCAACAAAGGCGAACTGGC 466279 29 100.0 32 ............................. ACACTCAACGCTGTAGATGTAGTCAGTAAACC 466340 29 100.0 32 ............................. GCGTGGAGTAATGGGCGGCTAAAACTGCCGGA 466401 29 100.0 32 ............................. ACCGCAGGTGATATTGACACCGGAGCAGGGGG 466462 29 100.0 32 ............................. CCAGTAGTCAAACCCCAGATTGAGCAGTGAGA 466523 29 100.0 33 ............................. CAGCAAAAGTAAAAACCGCTTCCGCCCAATTGC 466585 29 100.0 32 ............................. GCTACGGTAAACGTGAATGTGCGTATTGACGC 466646 29 100.0 32 ............................. GAATATAGGGCTTCATATTTGCCAGTTGTTTT 466707 29 100.0 33 ............................. ATCGGGCGGGATATGTGCTGGATTCGTATTAGC 466769 29 100.0 32 ............................. GTTGAATAATCCCCGCACATCATCCTGTAAAA 466830 29 100.0 32 ............................. CAGTCTGCGGGGTTTCCTGCGTGTAATGAAGT 466891 29 100.0 32 ............................. GGAAAAAACGCTTGTCGCCAAGTATGTTTTTG 466952 29 100.0 32 ............................. CACAGAGTTAAACGCCGCTGCAGCGCTGTTTA 467013 29 100.0 32 ............................. TTTTTATCACGCTCAGACCTGAAAACAACCGA 467074 29 100.0 32 ............................. TTCCATATTCAGGATCATATCCGCACGATAAC 467135 29 100.0 32 ............................. CCTGACGCCAACGGAAACGTGAAAGTCTCAAC 467196 29 100.0 32 ............................. TGTTCCCCCAAGGTTCAAAAATTCAATATGAG 467257 29 100.0 32 ............................. GATGACCCGTATACGTTCAAAATCAAAATCTA 467318 29 96.6 32 ..........................T.. CAATAGGGAAAATGGCATATGAGGGCGCGCAA 467379 29 100.0 32 ............................. TAAAACGATATTCCCGGATAAAAACGGAAAGC 467440 29 100.0 32 ............................. CCGACATGGGCAGGATTGCTGACGTTAGTCGA 467501 29 100.0 33 ............................. GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC 467563 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 467624 29 96.6 0 A............................ | A [467650] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGAGAATAAAAGCGCTCTTTCCTTTAATTACTTTGCCTGAAGCCTGGGATGAAGATGAGGGTATCGACCAATTTCAGCAACTTTCCTGGTTTATTTCCGCTGCGGTTGTACTGGCTGACTGGACTGGTTCTGCCAGCCGTTATTTTCCGCGTACTGCGGAAAAAATGCCTGTTGATATCTACTGGCAGCAAGCTCTCGCTAAAGCACAAACTGCCATTACGCTATTTCCCTCAGCGGCGAATGTGTCTGCCTTTACGGGCATAGAAACGCTTTTCCCTTTTATTCAGCATCCCACACCGTTACAACAAAAGGCGCTTGAGCTGGATATCAACGTGGATGGCGCCCAACTCTTTATTCTTGAAGATGTCACTGGAGCCGGAAAAACAAAGGCGGCGCTCATATTAGCTCATCGACTGATGGCGGCAGGTAAAGCGCAGGGACTCTATTTTGGACTGCCGACAATGGCGACAGCCAACGCGATGTTTGAACGTATGGCGAAC # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //