Array 1 84585-83656 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMEE01000047.1 [Pantoea] beijingensis strain LMG 27579 contig9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 84584 28 100.0 32 ............................ GAAACGGATGATGGCGGGAATAAGCGAGAAAT 84524 28 100.0 32 ............................ GCTTGAAGTGGCAACAGAAGGTTCGCGGTTTC 84464 28 100.0 32 ............................ CTCCGAATTAGTTCACATTGCACCTAAAAATC 84404 28 100.0 32 ............................ ACCAGAATCCATCCTGACAGGATCGTGAATCT 84344 28 100.0 32 ............................ ACGTTGCGCCGGTACGATGACACTTACCTGAT 84284 28 100.0 32 ............................ GGATCATAGTTGCCCAGCGTGGCTTCTTTGAA 84224 28 100.0 32 ............................ GATGTAATCCGGCAGGCCGTAGATGTGCTGCT 84164 28 100.0 33 ............................ CTGAATATTTTGAGCCAGAAAACGGTAATGAAT 84103 28 100.0 32 ............................ AATAAAAAGGGCCACAATAAGCGGCCCGTTAA 84043 28 100.0 32 ............................ TGCCACATAAGGTATTAAAGGTGCCGCCATTT 83983 28 100.0 32 ............................ TTGCTCGGTCAAAACCTCCATGTGCTGCCCGA 83923 28 100.0 32 ............................ CGGAAGCGGAGAAAATACCGGTTCAGCTAATA 83863 28 100.0 32 ............................ AGACCTGTCACGCCCCCCATTCCTGTGCGCCA 83803 28 100.0 32 ............................ GACGTACTGAGGATGTAACCTGAGCATCTTTA 83743 28 100.0 32 ............................ TCAAGCTTAGATAGCTCAAGCTTTCTCTTCGT 83683 28 96.4 0 ..........................G. | ========== ====== ====== ====== ============================ ================================= ================== 16 28 99.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TATTGTCAGCCATCTGCAACCGGTGGGGGAAGACCCGCAGCGTATTTTACGGCAGGTGATTGAGCAGTTTGAGGAACGGGTCGCGGCTTTTCCTTCTGGTTGCCAGATTTTGCCGGAGTTGCTGAAACTGGGCTGTGCTAAATATCGTGAATTTAATACATTGAATGGATATCGGGTGTTGTATTCGATTAACGATATGACAATAACGGTTTATGCCATCCTCGCCCAGCGGCAAGATATCAAACAATTATTATTTAAGCGGTTGATGATGGTATAGCCTGAAGTCATTACGTTAAACGGTGTAGATAGCGATACGGTAAATTCCTCAATATTTCCGTTGCTCTGATAGCGCTCAGTAATGTCGATTAAGCGACCCTTTTTTTTGCCCTTTACGTATCCTATTGATTTTTAATAAGAGGGGATTTTAATATAAAAAAGGGTTTTTTACGGAGAATGGTAAATTTCCATTTTATAACAATAAGATGAGATTTTTAGCTTCG # Right flank : TCCCTGCAGATTTTAGTGAATGCCTTGCCGTTGATTCTTGCCCTCCTGAACACTCAGAAACAAGCGAATAAGGAAAAACGATCGCAACAAAAAGTTCACGATTCTAATTGCACATTCTCCATGCATTCTTCCCCATTTTAAGACAATACTGTGCGTCGCCATTTACGGTTCAGAGCCTGCCAGGGCTGGCCTGACCGATGGCGTGATTATTGCATCGTGACCTGCCTGTTCCAACTGCCTTATGTTGCCAGTGCGCGATTATATCGCCTGCAAAATGAGCACGTCAGGGACAATTATACTAATGCTAAGGGGTTGTGTATGAAGAGTGCGTTGATCAACGCAATAATAGTGAGTGCCGGTCTGTCGGTTATCACTGCTGTAGGCGCGGAAGAGTTGACCGGAACCTTAAAAAAAATCAATGACAGTAATGTGGTGGTTGTGGGATATCGGGAGTCCAACATTCCCTTTTCTTATCAGGATGATGCTAAAAATGTGATGGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 95060-94020 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMEE01000047.1 [Pantoea] beijingensis strain LMG 27579 contig9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 95059 28 100.0 32 ............................ AAGTGCCGACCGTTACTATGCCACTGCACTTC 94999 28 100.0 32 ............................ TCACTTATACTGTTCAACCGCTCAACACGAAC 94939 28 100.0 32 ............................ GATCGGCGCTTCGGCGCTGGCGGAGCTGAATA 94879 28 100.0 32 ............................ GAAAAATACGCGAAATGGCGATAACTCATACA 94819 28 100.0 32 ............................ ATTTACGTGGTCCAAGTGGTCAGGCTCCCTGC 94759 28 100.0 32 ............................ AGCAGACAGATTTCCCTTTTTTAGCAAGACAA 94699 28 100.0 32 ............................ CGTGACGCAAATGAGACATATCCTCGCCGCGA 94639 28 100.0 32 ............................ TTCGGCAATCGCCCGGTATGGGGCGGCTTTGA 94579 28 100.0 31 ............................ GCAGAATTTGCATTCAGTTGCCGTGGTTCCG 94520 28 100.0 32 ............................ TCCAGCGATGTGCGTAAATTTGTAATCTCTCT 94460 28 100.0 32 ............................ AGCGACCCGTCGCACCGCCCGGACCTCCGATG 94400 28 100.0 32 ............................ TGACAGATTCGTCACCAGCGACCGCCGGAAAT 94340 28 100.0 32 ............................ GTGTGCTTCAGGGGTCAAGGCAAAACGTTGTT 94280 28 100.0 32 ............................ GCCGAGGTTTAGCGCCTCGCGCACATCATCGC 94220 28 100.0 32 ............................ GAGCTGGAAGCCGGTGCGTGTCTACACCGACG 94160 28 96.4 32 .....................C...... TCCGCTTTTCGCCCGGCTGTCGTGTCAGCACG 94100 28 100.0 25 ............................ CTTTAGTGACGGAAAAGCGAGGCAT Deletion [94048] 94047 28 75.0 0 T.AT.................G.T..CG | ========== ====== ====== ====== ============================ ================================ ================== 18 28 98.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTCGATAAAGAGACTCACCGTGTCATCGGTGGGGCGATTGTCGGTACGAACGGCGGCGAGCTGCTGGGTGAAATCGGTCTGGCTATCGAAATGGGCTGTGATGCGGAAGATATCGCGCTGACTATTCATGCGCACCCGACGCTGCATGAATCCGTTGGTCTGGCGGCTGAGATCTTTGAAGGCAGCATCACTGACCTGCCTAACCCGAAAGCGAAGAAGAAATAGTTTTTCTGCTTACGGTTGGTTATAAAGCGGCTCCCATTGGGAGCCGTTTTTGTTTTGTGCCGTTAGCACCCGGATGCGGTTACCCTTCTGTTAAACGCAGGGGATTTTCTGGCGACGGCGTGTGGTATGCTTTCCCCTTCGATAAACCCTGTTTTTCTTATTACCCGTAACGTATTGATTTTAAATCACCGTTTTATTGTCTGCGAAAAAAGGGTTTTTCGCGAAGAAGGCCGCTTTTCTTAATCGCAACAAAGGGCTAGGCTACTATGGCTTCT # Right flank : ATGAGAGACGTCAGGCGGCCCATCAGCATGAAATATGTTACCGGCTTCTCACGATGAGAATTATTCTGTTGCATACAGTGGCCTCCGGGATAATCCTCGTCTGGATTTATGGAGAATCACGGCCTGTCCTTTGAGATGATTTTATTTGCCAACCGGGCGCTGAAGCGCATCCAATATTTTGAGCGCCACCGTATACGCCTCAATTTTCAGGATGACCCAGTCTGCGCTGTCGCAATATAAACCTTTTGGGCAGGGCTTTGGCGAAAGGAAGGAAGCCCAAAGTATGCTGGCACCCTCAGATTTAAAAACGATCCTGCACTCTAAACGCGCAAATATTTATTATCTGCAATATTGCCGGGTTTTGGTGAATGGTGGCCGGGTAGAATATGTCACCGAACAGGGAAAAGCATCACTTTACTGGAATATCCCGATCGCCAATACCACGGTCGTGATGCTCGGTACCGGTACCTCGGTAACTCAAGCAGCAATGCGTGAGTTTG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //