Array 1 166854-167421 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJM01000007.1 Pectobacterium brasiliense strain Y3 Y3.scaffold7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 166854 28 96.4 32 ...........T................ TGTTGCGATTTCGGCGTCAAAAAACCGACCAC 166914 28 92.9 32 ..........AT................ AGCAGGATACACATAAGGGTCACGGCGGCACG 166974 28 100.0 32 ............................ AGGATACGCGGCAAGCGGCGTATGGTCAGCCC 167034 28 100.0 33 ............................ GAGCATATCCTTTCAGATTTGCGGCTTTGGGAA 167095 28 100.0 32 ............................ TGACTGACGCTAAATCCAACATTTCCTGTTCA 167155 28 100.0 32 ............................ TACACCTACCAGCTAATGGTAATCCGCACCTG 167215 28 100.0 32 ............................ AACAAACCAATTAGTGAAGTGATTGCGGAGAT 167275 28 92.9 32 ...........TG............... GCGCTGCCACCCTTCGGATCGTTGTCGAGAAT 167335 27 92.9 32 ...........T..-............. TCAACTGTGCACTGGGGATCGGGGCTATTTCA 167394 28 85.7 0 ...........A.C......T.A..... | ========== ====== ====== ====== ============================ ================================= ================== 10 28 96.1 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : ATCCTGACGTTCTGTCATAAAGTCAGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGTTTAACAGGACGCAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGCGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGAGCACCTCCTCCTTAATACAGAAATTCAGCCAGCGACTTACCGTTTATTATTGCTGGCTAAAACATAGGCTAAGTATAGATATTAATCATTCGATTGTATATCCATAGCATATGCAGATACCTGACATAGGCCTATCGTCGATAAATGAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATCGTCGTAACTTATTGATTTTAAATTTAGATTATCAGCTCTGATAAAAAAGGTTTTTTCGGGGAAAATGGTTTATTTCCTTTTAAAATTAGGCAACTACCGTAAAATATGAACGG # Right flank : AATAAAACGCAGCAAAAGTCAGGAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGACTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAGCTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGCCGCATCGCGCTGGAACAGGCACAGCTGATTCTCGGCTATCATGCCCGTCTGTCGCCGAACGCGGTCGGGCTAGAATGTCTGGGGTTAATTGAGGTGCGACTGATCAATCACACCAGCGAATACGTTGAGCACTTTCACCAGATGCTGGGAGAAGTGGACGCCATCATCGACGCCTATAAAACCACGGGCGATGCCGATTACCTGTTAAAAGTCGCCGTGGCAGATCTGCCCGGACTCAGCACGCTGATTAGTCAGATTCTGTCGCAGAACAAGAGTG # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 175396-173324 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJM01000007.1 Pectobacterium brasiliense strain Y3 Y3.scaffold7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 175395 28 100.0 32 ............................ GATCTCTTCCGCTGGCAGGCCGTATTCAACGA 175335 28 100.0 32 ............................ ATTCCCCCCATAAGGCGCGAATCTGTGAGGCA 175275 28 100.0 32 ............................ CCTGAACCCGGCCACTGAGCCGGGTTTTTTGT 175215 28 100.0 32 ............................ TCAGCGCAAGGTACGGACACAATCGAGGTTGC 175155 28 100.0 32 ............................ TGGAATATTTCGCCCATCGCACGCTGGCTGTC 175095 28 100.0 32 ............................ AGCTGTCGCTGGTCTCCATTGCGGTCATATTG 175035 28 100.0 33 ............................ ATCCCAGCGACTGCCGGGACGTTCGTGATCGGC 174974 28 100.0 32 ............................ CGCTCGCGCTCGATCCGCTGCCGTTCTGTGGT 174914 28 100.0 32 ............................ AGCACCCAATTGATTGATGAGGCTATGACGTT 174854 28 100.0 32 ............................ TTTATCGTCGGTAGCCAGTGAGTAAATAGCTT 174794 28 100.0 32 ............................ TGAACAGCGAGCCAGATGAGCGACTCAATGCG 174734 28 100.0 32 ............................ GTATCAACCTCGATCTGACGCTTGGATGCACC 174674 28 100.0 32 ............................ ACACCGGATGAGGCGTTCCAGGTATCGAATAA 174614 28 100.0 32 ............................ AGTTCCGCAGAGAGAATTGCCGCCATTGCCAC 174554 28 100.0 32 ............................ TTCTGCAACTTCGATCTCTTTCGCTTCTTCCC 174494 28 100.0 32 ............................ GCGCCGCAATGCTCAAAGACAAGCCTGTAACA 174434 28 100.0 32 ............................ GGCCTCTACCCGACAACTGCCCGCACTGTGCA 174374 28 100.0 32 ............................ ATGATCTACCGCCAGAATTAATGTGAAAATGA 174314 28 100.0 32 ............................ ACTAAAGCCGATTCTGAATTTAAGTTCATTCA 174254 28 100.0 33 ............................ CCGGTGGAAGAAATGATACTGGCGCGTTACGAA 174193 28 100.0 32 ............................ GCGTTGTCATCTTCGGTAAGCTGGCTGAAATT 174133 28 100.0 32 ............................ AGTGATTAACATCCGTAAAGCGCAACGTGAAG 174073 28 100.0 32 ............................ ATTCCCGGCTATCGCTCAACACTTCGCGCCCA 174013 28 100.0 32 ............................ TCGGCTGCTAATACCACCAGTAGCAACTAATA 173953 28 100.0 32 ............................ ACTACAGCCACATCGACAACAAGCGCAAATGG 173893 28 100.0 33 ............................ CCTCGGTGTTTACCGTGCCGAACCCGTCCTGAC 173832 28 100.0 32 ............................ GTTGAAGCGCTCAAGGTCATGGATGCGTGGGG 173772 28 100.0 32 ............................ GTACTTGAAGCCATTCAATCTGTATTGAAATC 173712 28 100.0 32 ............................ TGTGGCACTGGACTGATGCGCGACTTCACTGA 173652 28 100.0 33 ............................ TGACTCGCCCCCACCTTGGGGGTTTTTCTTTCC 173591 28 100.0 32 ............................ TGCTGGCTACGGGCCGCAATCTGTATCGTCCC 173531 28 100.0 32 ............................ TGTAGGCGTCGAATTAAATCGCTCATCCTGTG 173471 28 100.0 32 ............................ ATCAACGCGATAACCTGTTAAATATTTTGATG 173411 28 96.4 32 ..................C......... CAGACGCCGTCGCTGCCGACTGCCTGAACTTT 173351 28 78.6 0 .............C......T...TCCC | ========== ====== ====== ====== ============================ ================================= ================== 35 28 99.3 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCGTGACAGAGGTGCCGGTCCCCAACATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTCACATATTCGACACGTCCACCGTTAACGAGAATGCGGCAATGCTGGAGATAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCAGGCTAACCATTTGATAAGAAAAAATATAATCTTCAGAAAACTAACAAAAATCAGATTATCACAGTTGTATATGAAAAATTCTGACCGCAAAAAATATTACCCAAACACAGACCCTTTTTATTTGGCCTATTTCACAGGCTTAACAATCAATGAGTTACAGATGAGCTGAAAAAAAGGGTTTTTGCAGGGAAAACGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTGATCGGGCTACT # Right flank : TAGTTTTAAGCGTCATTATCTGGCTATTATCGAGGTAGCGCTATCGGCAGAGTTTGATGCGTTATCGCCTTTAAATAACGTATTTTTGATTCCCCTTTCTCGTAACATTTTTAAGTAACGGGTTTCTTTGTGTGGAATGAAAAATTGCGGATTGAACGTTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTAGCCTTACAGGGAAATAGTGCGTTGACTTAAGTAAAATTCAAAGGAGTGAAGCGACTGTGAAATACGATCCGGTTTTAAAAACGCTTGTGGATGATGACTATCGGCTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTAACTGTGCAGGAAGCGACGTATTTTTTAAAGACGTTATGTACACCAAACCCTAATGAGTCGTGGAAAACGGCCATTTTTGCCTGTACCGATCCCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 183968-184474 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJM01000007.1 Pectobacterium brasiliense strain Y3 Y3.scaffold7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 183968 28 100.0 32 ............................ TAGGATAATGGGGGAATAAATGGACGCTCAGG 184028 28 100.0 32 ............................ GTCAACTTTTTGTTCGATCATTTGCTGGCGAG 184088 28 100.0 32 ............................ ACAGATATTATCGTTCATCGTGGCTTCCTGTA 184148 28 100.0 32 ............................ CATTCTCATTCAGAATCGTGCTGAACTGATGC 184208 28 100.0 32 ............................ CGTTTCTGAGCGAGTTATGACGTTTAACGAGT 184268 28 82.1 32 .T.A....T..T........A....... ATAAAAAAGCCCGCAGCGATTATCAGCAGGCT 184328 28 82.1 32 .T.......T.T.C...T.......... ATGACAGGAAAACCAGCGCCAGCAGCCACGGA 184388 28 96.4 32 .T.......................... GTCGCGTCGTTGCCGCCACTTGCCGCTCCCGC 184448 27 82.1 0 .T.........T.C.........-..T. | ========== ====== ====== ====== ============================ ================================ ================== 9 28 93.6 32 GCTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GAGGCGCTCTCCACGCTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACATTGATTTCTGAGTGTAAAGCCGTACCCAACGGCGTGAAATTTCGCACCGTACGCCGCGTTCAGCTCAAGAGCAGCGCAGAACGGCTGCGTCGACGCTCGGTGAACAAAGGCTGGCTGACGGAGGCGGAAGCCGCAGCACGAATTCCTGATGCGGTGGAAAAACGCAGCGCCCTGCCGTTTGTGCAAATTAAGAGCTTGTCCAACGGGCAGATGTTTTTCGTGTTTATAGAACATGGTCCGCTACAGAATGCTCCTAGCGCAGGACGCTTTTCCTCCTACGGCTTAAGCGCAGAAGCCACCGTACCTTGGTTCTGACCCTTTTTTGGCGACCATCTGCAAGTCATTGATTTTTAATTGCGGCTGGTCGCCCTAATAAAAAGGGTTTTTCGCGATAAAATGAGTATTCTCTTTAATAATCTGGTGGTTAGCGTAAAAACTTAACG # Right flank : ACTATCGAAATGCGTCGCTGGCGCGACGCATTTTTGAGGACTACTCCCCGTTGAGTGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGCTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGAATCGTTAGACTGTTGCCCAGCAGACTACCTTTTAGGTGCGCGGGCATGTCGTCGCTACCTTCATAGGTATGGCGGTAATACGGTTCATCCTCCGGCACTAAGCGATTAAAAAAGCTCTCGAAATCCTGCCGCACCGTGGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGTTTGATGAACACCTGCATCAACCCGACGTTTATCTGGCGCAGTGCAGTAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCATCCACATCGCAGCCCCCTGCTATCAGGCTTCGCGTGCCAGAATCGGC # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //