Array 1 11265-5775 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLIT01000119.1 Acinetobacter baumannii strain ABOB04 contig-2000037, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 11264 28 100.0 32 ............................ TTCTTCTCTCTGATTACAAGCTCCCTGGGGCA 11204 28 100.0 32 ............................ ATAAGGACGATGCAAGTGATAGTGCTCACCGA 11144 28 100.0 32 ............................ ATGCAGATAAAACAGTAAAACTCTATGAAAGC 11084 28 100.0 32 ............................ ACTGGTTAATTTTAATAATGCGGATGGATATT 11024 28 100.0 32 ............................ TCTTAATCTCTTCAATGTTCATCTTCAACCCT 10964 28 100.0 32 ............................ AAAACGTTGAACATTAGTAAGTGTTAGAACAC 10904 28 100.0 32 ............................ TTACGATGGCCAACAGAAATATTAGACATATA 10844 28 100.0 32 ............................ GATAAAGGTTGTATGCGCTCTAAAGCGTTAGT 10784 28 100.0 32 ............................ AATCCAAACAGCAAAACCGATGATACCTGCAA 10724 28 100.0 32 ............................ AGTGGGCTTATATCTCTTCTATAAAAAACGGA 10664 28 100.0 32 ............................ AATGCTGCTGTTGACGTGGCTGGTCCAGTTGC 10604 28 100.0 32 ............................ GGAGTCAGGCACACTATTAGATAGCAGTGTGC 10544 28 100.0 32 ............................ ATGATGAACCTGTCTTACCTTCAGATCCTTCT 10484 28 100.0 32 ............................ AAGCATTTCAGTTGCACCAAGATGAATACTTT 10424 28 100.0 32 ............................ TCAAGTGCAGATGCAGCCTAATTATTCTTCTT 10364 28 100.0 32 ............................ AAGAACGTTTGGCAGCAAAAGGAACATTACCA 10304 28 100.0 32 ............................ TTATTGTGAGCACCTTGATTGCTGTGCGCTGC 10244 28 100.0 32 ............................ TACAGCGGGAAACTTGAAAGTCATTGCGAAAT 10184 28 100.0 32 ............................ TGATTGCCCCCTGAGGAAACTGTATAAAGTCC 10124 28 100.0 32 ............................ AAACACCAACTAAGCCATTCCCTATTCAAAAA 10064 28 100.0 32 ............................ ATGAACTTTTAATGGATGCATGCGCCGCCCAC 10004 28 100.0 32 ............................ ACGAACAACGATAATTTGGAATACACGCTCAT 9944 28 100.0 32 ............................ TCAGGAGAAAGATCGTTCAAAAGCTCAAAACC 9884 28 100.0 32 ............................ TGAAAGTTTTGATATCCACTCTGCTGTTTCAA 9824 28 100.0 32 ............................ AGATGGTAAGAAAATTATTGAGTCTGGAGACA 9764 28 100.0 32 ............................ CGACAGTCCAGTTGATCAGATCTTGATTAGAC 9704 28 100.0 32 ............................ AATGACATGGTTCAACAATTAAATTCATCTCA 9644 28 100.0 32 ............................ GTTCTTTTCTGCAATATGTGCCATTAGGTATT 9584 28 100.0 32 ............................ ATTTTAGATGAAACAAAAGATAGCAGGATTAT 9524 28 100.0 32 ............................ AGACCAAGCGGATTGACCGTATTGATAAATAA 9464 28 100.0 32 ............................ TTCTGCAATACAAATCACTGGATCAGCCAGGT 9404 28 100.0 32 ............................ TGAGTCTTTGATTTCCCAAATATTACTTGAAA 9344 28 100.0 34 ............................ CCTGAAAAATTTCACTGTGTCCATTTCGTTATTA 9282 28 100.0 32 ............................ TATGTCTTTAAATTCTGAAAAAACACTTGTTC 9222 28 100.0 32 ............................ GAAAAAATTGAAAACTTTTTAGAAGTAAATGA 9162 28 100.0 32 ............................ GCCACACATGCCTAAAAACGCAAGTGCGCTCG 9102 28 100.0 32 ............................ ATTATCAGATAAGCCTTTTATGAATGATCGTT 9042 28 100.0 32 ............................ ATTAGCTATTAGCTTTTTGGCAACAACAACAG 8982 28 100.0 32 ............................ AGTTCATGAAAACAGCTTTAAAAAGAAAGCAC 8922 28 100.0 32 ............................ TCCGAAGGTAGTGAAGCTGTGTGTGAATTTAC 8862 28 100.0 32 ............................ TTGCAAGCTCGTCTAGCTAAAGTAGACCCTAA 8802 28 100.0 32 ............................ TGGTACGACAACTACGAAAAGCTGAGCAAAGT 8742 28 100.0 32 ............................ TCAACTTAAATGGATGCTCCCCGCGGTGAATT 8682 28 100.0 32 ............................ TTGATTGCTAGACGGATTTTTAGGCAGATCAT 8622 28 100.0 32 ............................ GAGTTTAATGCGCTATATGGCGACGAGGATTT 8562 28 100.0 32 ............................ CATGCAATCGCGTTGATTACCGCAGCTTCGAA 8502 28 100.0 32 ............................ ATGAGCCGCAACCATACGGTCTATGACTTCCA 8442 28 100.0 32 ............................ ATAGCGCCCTGCTCTATGTTGTCACTTCCGAA 8382 28 100.0 32 ............................ TCCAAGTGAATCGGCTCCTAATGCAAATGACC 8322 28 100.0 32 ............................ TGAAAACCAATATGCTGCCTAATTGCCATAAG 8262 28 96.4 32 ....A....................... GATCTGCGTCCATTTGTACTTGCTGCGGGTGC 8202 28 89.3 32 ....T.......AT.............. ATATACAGCACCGCTTAGTGCGACGCGGTCAT 8142 28 89.3 32 ....T.......AT.............. GCCCACAGGTTGAGCATCAACGGCCATCGAGA 8082 28 89.3 32 ....T.......AT.............. ATCATAGAGCTCACTTTGTCGTTGAGCCTGCA 8022 28 89.3 32 ....T.......AT.............. AGAAGGCCCGTAATTTAACTGTAAGCCGTGGT 7962 28 89.3 32 ....T.......AT.............. TCTTCCTGAGTTTTAATCCCATTTGCCTTACA 7902 28 85.7 32 ....T.T.....AT.............. CATCTTCGCCAATTGCTTTTGGAGAGTTGCTA 7842 28 89.3 32 ....T.......AT.............. TTCAGGGAATTATCGTGAAACTTTCATTGACT 7782 28 89.3 32 ....T.......AT.............. TGCACCAGCTGCTGGCTGGTTGAAATCTGCAA 7722 28 89.3 32 ....T.......AT.............. AGAAGGTGCAGAGTTTTGGGACTTTGGGTGGT 7662 28 89.3 32 ....T.......AT.............. TGTTTCAAAAGCTACACCATCAAAACCATTGC 7602 28 89.3 32 ....T.......AT.............. TATTTAAGTAATAAGTTTAATAACGACCTAGT 7542 28 89.3 32 ....T.......AT.............. AACACGTTCTCTATATCGCTGTTTGCGGTCAT 7482 28 89.3 32 ....T.......AT.............. TTCAGTTGGATATGCCTTTGATACCAAGAAAC 7422 28 89.3 32 ....T.......AT.............. GCCTGCAGACACGGATTTACGCAGCTGATCGA 7362 28 85.7 32 ....T.......AT...........C.. TAACCAAACTATGTCATCGATCGGAGATTTCA 7302 28 89.3 32 ....T.......AT.............. TTAAAATAAATGCCTGTGGTTTTTTCTTAACT 7242 28 89.3 32 ....T.......AT.............. AGTTTCCGAAGTTGAATTACACTCGCCAAGTT 7182 28 89.3 32 ....T.......AT.............. TAACACAGTGATTTGATTACCTTGAGCAACCC 7122 28 89.3 32 ....T.......AT.............. ATCTTGATGCCGAGGTCTTTAGCTTCTTGAGA 7062 28 89.3 32 ....T.......AT.............. TCATCCACCTTTGATGAAACGGATCCACGCAA 7002 28 89.3 32 ....T.......AT.............. TCTTGTGTGACGGCCTCCACTCCAGATCCCGC 6942 28 89.3 32 ....T.......AT.............. TTAAGCTTCAAAAATAGCCATTGATTATAAAA 6882 28 89.3 32 ....T.......AT.............. TGACAACTTTCCACGGCAATCAGGGCTTTCCA 6822 28 89.3 32 ....T.......AT.............. TAAAGATGCACGTGGCCTAATGCAAGTTATTC 6762 28 89.3 32 ....T.......AT.............. TTTAAAATTAGGTGCTGAGTTACCACGGCTCA 6702 28 89.3 32 ....T.......AT.............. TAAACCAAGAACTTGAAGATTTTGATGCTTAT 6642 28 89.3 32 ....T.......AT.............. TAAAAATAGTGTGTTAATTATTTATGATGAAA 6582 28 89.3 32 ....T.......AT.............. CGTATACATGCACATCAATACGATATCCCGAT 6522 28 89.3 32 ....T.......AT.............. ATACTATTATAATGATCTAAACCCATTACAAC 6462 28 89.3 32 ....T.......AT.............. TGCAGCTACTCGACATGTTGGTAGGGCAGATG 6402 28 89.3 32 ....T.......AT.............. CAGTCGGCTGGTGCTAATTGAATAAAATCGTT 6342 28 89.3 32 ....T.......AT.............. AGATTGAGGCGATTTTTATCGCGGACATTGCC 6282 28 89.3 32 ....T.......AT.............. CAGTCCCCGCTTTGAAGCATTCCCATCAGTAC 6222 28 89.3 32 ....T.......AT.............. TCACAGCTATCGTCTGGCTGCCGTCGCGTAGA 6162 28 85.7 32 A...T.......AT.............. TTATTATTAAACGGGAAAAGTATATTCTTGCT 6102 28 89.3 32 ....T.......AT.............. ATACTATTATAATGATCTAAACCCATTACAAC 6042 28 89.3 32 ....T.......AT.............. ATCATCAATAAGTTGGCCTTGATTTAAATAGT 5982 28 89.3 32 ....T.......AT.............. AGATACAAACGAGTTCGCATCTCGACCAGAAG 5922 28 89.3 32 ....T.......AT.............. ATTATCCAGATAAAACCATATCTACAAAGTGG 5862 28 89.3 32 ....T.......AT.............. TCAACCTGAACACAGACATACATGTTCTATTG 5802 28 78.6 0 ...GC.......AT..........AT.. | ========== ====== ====== ====== ============================ ================================== ================== 92 28 95.0 32 GTTCGTCATCGCCCAGATGATTTAGAAA # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACTTTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTAC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Alternate repeat : GTTCTTCATCGCATAGATGATTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCGTCATCGCCCAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 16355-19497 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLIT01000119.1 Acinetobacter baumannii strain ABOB04 contig-2000037, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 16355 28 100.0 32 ............................ ATCATCGTAAGCATTGAATCGCGTGCCTTCAA 16415 28 100.0 32 ............................ AATGAGAAGAAAGTGGTTGCTATCGACTTCTT 16475 28 100.0 32 ............................ AATATGCTCGAATGAATTCCTTGTAGCATTCT 16535 28 100.0 32 ............................ AAGAACTGTGCGTCTTGGCGGTGGGAAAATCA 16595 28 100.0 32 ............................ ACTCCATAATTGCAGGTGTTGAAAGCTCACCG 16655 28 100.0 32 ............................ TTCTTGATCATCGTTATGTAAAAACCATTCCA 16715 28 100.0 32 ............................ AAGAAAAGTATGAACAGCAACTTATAGAAAAA 16775 28 100.0 32 ............................ GATGACCGTACCAACTGGATTTTGATATTCAT 16835 28 100.0 32 ............................ TTGTTGTGTATATAGGTTTTGCAGCTCATCTA 16895 28 100.0 32 ............................ TATAATCGAAAAACATCCAAAAGCGGGCAAAA 16955 28 100.0 32 ............................ AAAACGACCTTGTGACTCTGTGAATTCAATCT 17015 28 100.0 32 ............................ AGTTGCAACTTTAACAACTGACGGTACTGCTG 17075 28 100.0 32 ............................ ATAGTGGAAATACACGTAAGTTATTGATTTAT 17135 28 100.0 32 ............................ TGTTGTTAGGGCTATTTCTGCTTTATCCGATA 17195 28 100.0 32 ............................ AACTCATACAGCGGGTCCAAGAGCCTATGGTA 17255 28 100.0 32 ............................ AAGACCAGTTTTGAAGGATATTAACTTTTTAT 17315 28 100.0 32 ............................ TCGTGCTTGGGTATCACATATTGATGTGACTT 17375 28 100.0 32 ............................ CACTAATCTCTTTGATTTAATTAAGTTTCAAC 17435 28 100.0 32 ............................ ATCCGCATCATCAAAAATCGCAAGTGGGTTTG 17495 28 100.0 32 ............................ AATAACGACGGTTGCGCTGTTGCACGTTCAGC 17555 28 100.0 32 ............................ TTGATGAGAAACTGTTATTGTGTATGTCTCAC 17615 28 100.0 32 ............................ ACGACAGGTAAATTGGTTGCCATGTGTATTGA 17675 28 100.0 32 ............................ AATTGTAGAAAGCGTATCACTTATTTGCTTAT 17735 28 100.0 32 ............................ ACGGATTACCTACAGGTTTACCAGTTGCATAA 17795 28 100.0 32 ............................ TCTTGAAGGTGAGCCAACAAAAATCCATTTTT 17855 28 100.0 32 ............................ GTTTAAATCCATAAATGAATTTTGCGGTTTTT 17915 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 17975 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 18035 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 18095 28 100.0 32 ............................ AATGTACTTTAATTTCCACTCGACACCAGTTC 18155 28 100.0 32 ............................ CATGACCGAAACAGCCAAAAAGGTTTTATGTA 18215 28 100.0 32 ............................ TAAAGGATAGTTAGCTGTAGGCCCTGCGGTTT 18275 28 100.0 32 ............................ TTATAGTTATGTGTGTGATATCGTTAAGCTGC 18335 28 100.0 32 ............................ TAGCACAATCCAAACCTCAATAAAAAGTAAGA 18395 28 100.0 32 ............................ GAGCCAATAAGATCGCGAAGTATGCGGAAATC 18455 28 100.0 32 ............................ ACAGAGAAAACCCCACATGTTCGAGGGACTGC 18515 28 100.0 32 ............................ ATAATTCCGCCATCCTCGGCTGAGATATGGGT 18575 28 100.0 32 ............................ TGCCGGAGCGGTCTTGTCATTGGCGAACCCGC 18635 28 100.0 32 ............................ TATGCGATTTGATAATTAAATTGCGATACTGG 18695 28 100.0 32 ............................ GAAATAAAAAACACCTGATGAAAACAGTTCAC 18755 28 100.0 32 ............................ ATAATCACGAATATCACCAGTAAACCAGTGAT 18815 28 100.0 32 ............................ TTATTGGTCCTGGTCAGTGGAATGGTGATTCT 18875 28 100.0 32 ............................ TGGGTAAAAGCCGATGGATTAATCATCTTTTG 18935 28 100.0 32 ............................ ATTAACAAGAGTGGAATTTATTGAACTATTAA 18995 28 100.0 32 ............................ TCTGGGTTCTTTTCGCGTGTATGGGATACTTG 19055 28 100.0 32 ............................ TGTAAAGTCATTCGTAATAACCGTTATACGGC 19115 28 100.0 32 ............................ AAAACCAATCAAATAACGGTTATGTGGCCACA 19175 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 19235 28 96.4 32 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 19295 28 78.6 27 ....C.....CTCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 19350 28 92.9 32 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGAT 19410 28 89.3 33 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 19471 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 53 28 98.9 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : AGAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //